Wall clock time and date at job start Tue Mar 31 2020 06:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48496 * 109.47443 * 59.99520 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.47156 * 179.97438 * 13 11 10 15 15 C 1.76193 * 100.00049 * 180.02562 * 14 13 11 16 16 N 1.32750 * 120.91725 * 359.71936 * 15 14 13 17 17 C 1.32301 * 121.47803 * 179.71524 * 16 15 14 18 18 C 1.50700 * 118.50913 * 180.29805 * 17 16 15 19 19 C 1.53001 * 117.50119 * 9.02107 * 18 17 16 20 20 C 1.52991 * 117.50058 * 300.35673 * 18 17 16 21 21 N 1.31223 * 122.98050 * 0.58092 * 17 16 15 22 22 C 1.34143 * 120.47916 * 359.71802 * 21 17 16 23 23 C 1.40136 * 121.98499 * 179.97438 * 22 21 17 24 24 C 1.36334 * 119.57976 * 180.02562 * 23 22 21 25 25 C 1.39192 * 121.02609 * 359.97438 * 24 23 22 26 26 C 1.36403 * 120.89241 * 0.02562 * 25 24 23 27 27 C 1.39889 * 119.50535 * 359.97438 * 26 25 24 28 28 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 30 30 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 31 31 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 32 32 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 33 33 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 34 34 H 1.09006 * 115.54638 * 154.68926 * 18 17 16 35 35 H 1.09003 * 117.49251 * 359.97438 * 19 18 17 36 36 H 1.08996 * 117.50021 * 145.02059 * 19 18 17 37 37 H 1.08997 * 117.50411 * 214.97881 * 20 18 17 38 38 H 1.09007 * 117.49667 * 359.97438 * 20 18 17 39 39 H 1.07998 * 120.21406 * 0.02562 * 23 22 21 40 40 H 1.08003 * 119.48407 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.55298 * 180.02562 * 25 24 23 42 42 H 1.08008 * 120.24932 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 16 1.8283 -7.5963 0.0032 15 6 3.1780 -8.7288 0.0062 16 7 4.4325 -8.2948 0.0023 17 6 5.4543 -9.1352 0.0101 18 6 6.8510 -8.5693 0.0119 19 6 7.0019 -7.0607 0.2173 20 6 7.2522 -7.6746 -1.1625 21 7 5.3068 -10.4391 0.0111 22 6 4.0816 -10.9852 0.0096 23 6 3.8875 -12.3730 0.0100 24 6 2.6200 -12.8753 0.0079 25 6 1.5136 -12.0308 0.0059 26 6 1.6672 -10.6754 0.0054 27 6 2.9544 -10.1279 0.0076 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.1568 -3.4354 0.0021 32 1 3.3612 -5.9713 -0.8858 33 1 3.3585 -5.9707 0.8942 34 1 7.6191 -9.2146 0.4383 35 1 6.0907 -6.4774 0.3507 36 1 7.8694 -6.7134 0.7784 37 1 8.2843 -7.7307 -1.5085 38 1 6.5060 -7.4955 -1.9367 39 1 4.7365 -13.0405 0.0119 40 1 2.4722 -13.9452 0.0086 41 1 0.5202 -12.4543 0.0046 42 1 0.8013 -10.0298 0.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010945064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:19 Heat of formation + Delta-G solvation = 50.537657 kcal Electronic energy + Delta-G solvation = -25669.531357 eV Core-core repulsion = 21934.418787 eV Total energy + Delta-G solvation = -3735.112569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.110 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50540 -38.92808 -38.52382 -36.61943 -34.40086 -34.30113 -32.47601 -31.67801 -30.63593 -30.01744 -26.92029 -25.66226 -25.05966 -22.95303 -22.60628 -22.52416 -21.73732 -20.00810 -18.61815 -18.43850 -17.83230 -16.92532 -16.16554 -15.81203 -15.72684 -15.53018 -15.25416 -15.14482 -15.04338 -14.58017 -14.33019 -14.11025 -13.57780 -13.08775 -12.79831 -12.76182 -12.69716 -12.48588 -12.05150 -11.96373 -11.86460 -11.71555 -11.60456 -11.25104 -11.02209 -10.95739 -10.77462 -10.71486 -10.61329 -10.37589 -9.49788 -9.48441 -9.42262 -9.34032 -8.96040 -8.82358 -8.06543 -7.80565 -6.22800 -4.30223 -0.13914 0.44138 1.08132 1.52004 1.87143 2.57430 3.08364 3.20204 3.27539 3.30364 3.47801 3.55046 3.83171 3.90618 4.03179 4.24475 4.30369 4.36760 4.57853 4.65948 4.72671 4.79992 4.87510 4.98789 5.08518 5.14023 5.20284 5.24743 5.38984 5.43183 5.49067 5.58247 5.64385 5.82909 5.84902 5.99671 6.02944 6.07586 6.34615 6.73069 7.17290 7.23746 7.41259 7.56229 7.88254 7.88442 8.42794 8.64426 8.89146 9.36326 10.87350 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.002464 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.539054 B =11361.906064 C =13139.856974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.249 3.751 10 N -0.701 5.701 11 C 0.513 3.487 12 O -0.543 6.543 13 C -0.149 4.149 14 S 0.071 5.929 15 C 0.187 3.813 16 N -0.535 5.535 17 C 0.373 3.627 18 C -0.104 4.104 19 C -0.152 4.152 20 C -0.154 4.154 21 N -0.519 5.519 22 C 0.177 3.823 23 C -0.109 4.109 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.066 4.066 27 C -0.152 4.152 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.394 0.606 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.852 -23.946 -0.272 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.129 3.871 10 N -0.349 5.349 11 C 0.295 3.705 12 O -0.422 6.422 13 C -0.300 4.300 14 S 0.310 5.690 15 C -0.081 4.081 16 N -0.255 5.255 17 C 0.102 3.898 18 C -0.124 4.124 19 C -0.190 4.190 20 C -0.193 4.193 21 N -0.236 5.236 22 C 0.049 3.951 23 C -0.128 4.128 24 C -0.097 4.097 25 C -0.145 4.145 26 C -0.087 4.087 27 C -0.161 4.161 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.227 0.773 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.571 -23.768 -0.274 25.624 hybrid contribution 1.486 0.854 0.014 1.714 sum 11.057 -22.914 -0.259 25.444 Atomic orbital electron populations 1.69976 1.06122 1.27333 1.48730 1.24953 0.94930 0.99516 0.94592 0.86344 0.79834 0.82843 0.77805 1.19586 1.20747 1.20752 1.21233 0.93348 0.90271 1.53443 0.91725 1.19203 0.88197 0.81668 0.98036 1.46384 1.11561 1.05465 1.71486 1.19553 0.88512 0.84018 0.78387 1.90714 1.16149 1.84300 1.51051 1.23899 1.02622 0.94594 1.08928 1.86436 1.01204 0.94641 1.86685 1.24720 0.97061 0.95158 0.91207 1.68484 0.97968 1.39487 1.19566 1.22001 0.93589 0.85230 0.88994 1.20659 0.90917 0.94248 1.06562 1.23045 1.04172 0.92870 0.98870 1.22982 1.02608 1.01803 0.91860 1.68536 1.23858 1.13190 1.17977 1.18840 0.87566 0.94365 0.94351 1.20702 0.98104 0.92234 1.01758 1.21061 0.92016 1.00552 0.96061 1.20975 0.99542 0.93134 1.00849 1.20965 0.95430 0.95963 0.96334 1.18992 0.96191 0.93081 1.07843 0.92405 0.95224 0.95225 0.77288 0.86106 0.86089 0.85390 0.87166 0.88039 0.87896 0.88550 0.84300 0.84810 0.84846 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -14.36 9.28 -34.44 -0.32 -14.68 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.38 5.43 -5.19 -0.03 6.36 16 10 N -0.70 -14.02 5.55 -61.47 -0.34 -14.36 16 11 C 0.51 9.72 7.85 -10.98 -0.09 9.63 16 12 O -0.54 -12.38 15.86 5.56 0.09 -12.29 16 13 C -0.15 -2.10 5.38 36.01 0.19 -1.90 16 14 S 0.07 0.98 19.84 -107.50 -2.13 -1.15 16 15 C 0.19 2.51 7.08 -15.84 -0.11 2.40 16 16 N -0.53 -7.14 8.16 -9.09 -0.07 -7.21 16 17 C 0.37 4.86 7.30 -157.25 -1.15 3.72 16 18 C -0.10 -1.06 6.21 -91.78 -0.57 -1.63 16 19 C -0.15 -1.36 10.00 -26.69 -0.27 -1.63 16 20 C -0.15 -1.36 10.24 -26.70 -0.27 -1.63 16 21 N -0.52 -7.01 10.32 -8.82 -0.09 -7.10 16 22 C 0.18 2.23 6.61 -84.86 -0.56 1.67 16 23 C -0.11 -1.04 10.01 -39.56 -0.40 -1.43 16 24 C -0.08 -0.56 9.95 -39.91 -0.40 -0.96 16 25 C -0.13 -1.00 9.96 -39.89 -0.40 -1.40 16 26 C -0.07 -0.68 9.45 -39.63 -0.37 -1.05 16 27 C -0.15 -1.91 5.75 -106.68 -0.61 -2.53 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 32 H 0.12 1.52 8.14 -51.92 -0.42 1.10 16 33 H 0.12 1.52 8.14 -51.91 -0.42 1.10 16 34 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.11 1.11 7.51 -51.93 -0.39 0.72 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.14 1.31 7.02 -52.48 -0.37 0.94 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -32.73 377.88 -11.87 -44.60 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.28 Total: 4.62 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -5.45 Total: -3.42 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.23 Total: -53.49 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.13 Total: -1.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.73 -11.87 -44.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010945064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.141 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds