Wall clock time and date at job start Tue Mar 31 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52287 * 110.39422 * 2 1 4 4 C 1.53351 * 106.62823 * 313.94738 * 3 2 1 5 5 C 1.50129 * 112.55129 * 318.84619 * 4 3 2 6 6 C 1.34538 * 118.39656 * 181.37214 * 5 4 3 7 7 C 1.50791 * 120.08261 * 7.61261 * 6 5 4 8 8 C 1.53261 * 108.53327 * 134.60812 * 7 6 5 9 9 C 1.50476 * 109.62103 * 50.04390 * 8 7 6 10 10 O 1.21461 * 119.14183 * 144.50528 * 9 8 7 11 11 C 1.40229 * 121.70595 * 324.50285 * 9 8 7 12 12 C 1.36033 * 121.12372 * 7.26594 * 11 9 8 13 13 C 1.50536 * 119.46864 * 183.42241 * 12 11 9 14 14 C 1.53430 * 110.16428 * 185.27656 * 13 12 11 15 15 C 1.50149 * 125.12456 * 5.05244 * 5 4 3 16 16 H 1.08995 * 105.07945 * 244.80434 * 15 5 4 17 17 C 1.48754 * 114.07438 * 0.48549 * 15 5 4 18 18 H 1.09001 * 109.08718 * 271.06158 * 17 15 5 19 19 C 1.53102 * 117.82778 * 147.10306 * 17 15 5 20 20 C 1.55265 * 102.97714 * 198.27953 * 19 17 15 21 21 C 1.52814 * 111.07792 * 129.15062 * 2 1 3 22 22 O 1.42907 * 110.23285 * 330.91289 * 21 2 1 23 23 C 1.50699 * 110.23455 * 208.95415 * 21 2 1 24 24 H 1.07994 * 120.00195 * 359.97438 * 23 21 2 25 25 C 1.37880 * 119.99876 * 179.97438 * 23 21 2 26 26 N 1.31514 * 120.00156 * 359.97438 * 25 23 21 27 27 Si 1.86799 * 119.99925 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47296 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.47241 * 119.99944 * 27 25 23 30 30 H 1.48493 * 109.47428 * 240.00283 * 27 25 23 31 31 H 1.08998 * 109.46991 * 60.69828 * 1 2 3 32 32 H 1.08996 * 109.47331 * 180.70470 * 1 2 3 33 33 H 1.09002 * 109.46842 * 300.70037 * 1 2 3 34 34 H 1.09002 * 110.03600 * 73.25575 * 3 2 1 35 35 H 1.09004 * 110.03882 * 194.64183 * 3 2 1 36 36 H 1.09007 * 108.85616 * 79.53829 * 4 3 2 37 37 H 1.09002 * 108.85834 * 197.93114 * 4 3 2 38 38 H 1.09002 * 109.63017 * 254.32001 * 7 6 5 39 39 H 1.08999 * 109.63127 * 14.89590 * 7 6 5 40 40 H 1.09004 * 109.44598 * 170.08767 * 8 7 6 41 41 H 1.09000 * 109.44323 * 289.99935 * 8 7 6 42 42 H 1.08006 * 119.43478 * 187.28234 * 11 9 8 43 43 H 1.09002 * 109.35285 * 65.06423 * 13 12 11 44 44 H 1.09002 * 109.23793 * 305.42196 * 13 12 11 45 45 H 1.09002 * 109.72046 * 195.34972 * 14 13 12 46 46 H 1.08997 * 109.71731 * 74.70120 * 14 13 12 47 47 H 1.09004 * 110.71141 * 316.65580 * 19 17 15 48 48 H 1.09000 * 110.70890 * 79.73285 * 19 17 15 49 49 H 1.09000 * 110.06465 * 142.83955 * 20 19 17 50 50 H 1.09001 * 110.06785 * 264.30293 * 20 19 17 51 51 H 0.96699 * 114.00373 * 179.97438 * 22 21 2 52 52 H 0.97002 * 119.99670 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0607 1.4274 0.0000 4 6 1.2578 2.1941 -1.0579 5 6 1.0292 1.3877 -2.3034 6 6 0.3599 1.9585 -3.3214 7 6 0.0090 3.4240 -3.2678 8 6 0.3437 4.0550 -4.6238 9 6 -0.2580 3.2286 -5.7280 10 8 -0.6864 3.7865 -6.7182 11 6 -0.3368 1.8311 -5.6434 12 6 -0.0058 1.1762 -4.4980 13 6 -0.0297 -0.3288 -4.4720 14 6 0.2487 -0.8377 -3.0516 15 6 1.4218 -0.0500 -2.4859 16 1 2.1790 -0.0399 -3.2699 17 6 2.0729 -0.6572 -1.2942 18 1 3.1484 -0.4898 -1.3517 19 6 1.8312 -2.1455 -1.0283 20 6 2.2271 -2.3017 0.4649 21 6 2.0796 -0.9003 1.1058 22 8 1.1639 -0.9520 2.2017 23 6 3.4215 -0.3955 1.5700 24 1 3.8510 0.4877 1.1211 25 6 4.1008 -1.0615 2.5681 26 7 3.5775 -2.1369 3.1152 27 14 5.7645 -0.4363 3.1431 28 1 6.1285 0.7811 2.3745 29 1 5.6964 -0.1060 4.5893 30 1 6.7911 -1.4864 2.9229 31 1 -0.3633 0.5029 -0.8962 32 1 -0.3634 -1.0275 0.0126 33 1 -0.3633 0.5247 0.8837 34 1 1.9143 1.8803 0.9806 35 1 3.1195 1.4322 -0.2589 36 1 0.2913 2.4695 -0.6355 37 1 1.7980 3.1041 -1.3192 38 1 -1.0556 3.5384 -3.0636 39 1 0.5893 3.9111 -2.4842 40 1 -0.0629 5.0656 -4.6641 41 1 1.4259 4.0944 -4.7484 42 1 -0.6656 1.2650 -6.5025 43 1 0.7323 -0.7139 -5.1496 44 1 -1.0104 -0.6780 -4.7952 45 1 0.4989 -1.8981 -3.0833 46 1 -0.6317 -0.6856 -2.4273 47 1 0.7814 -2.3982 -1.1774 48 1 2.4683 -2.7592 -1.6651 49 1 1.5601 -3.0099 0.9565 50 1 3.2591 -2.6433 0.5444 51 1 1.4589 -1.5094 2.9348 52 1 4.0557 -2.6055 3.8171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011679310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:49 Heat of formation + Delta-G solvation = -73.886367 kcal Electronic energy + Delta-G solvation = -32390.654236 eV Core-core repulsion = 28512.192714 eV Total energy + Delta-G solvation = -3878.461522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.198 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.19865 -39.71640 -37.79842 -35.22457 -34.84878 -33.01248 -32.12091 -31.90069 -29.83369 -28.76362 -27.93445 -26.93666 -25.64245 -24.07327 -23.38303 -22.74423 -21.89717 -20.41879 -19.42223 -18.85899 -17.56770 -17.03226 -16.20075 -16.07238 -15.78755 -15.29477 -15.08436 -14.82583 -14.68494 -14.49610 -14.00237 -13.86525 -13.59090 -13.37540 -13.16609 -12.91008 -12.74850 -12.56344 -12.45181 -11.92986 -11.81106 -11.68388 -11.66682 -11.47861 -11.43161 -11.29079 -11.10596 -11.06927 -10.78281 -10.66707 -10.51366 -10.32544 -10.29089 -10.11304 -9.92719 -9.69297 -9.56035 -9.52389 -9.09011 -8.79878 -8.55362 -8.01920 -7.98481 -6.19795 -4.26684 0.44761 2.09605 3.15637 3.18972 3.28802 3.31179 4.27067 4.29837 4.33808 4.46453 4.71043 4.88419 4.89511 4.96366 5.03141 5.09258 5.15411 5.18585 5.30189 5.40514 5.43959 5.52256 5.56099 5.67611 5.72261 5.78505 5.82177 5.83617 5.84667 5.92554 6.02864 6.06881 6.13231 6.15761 6.20061 6.21904 6.28439 6.34696 6.40437 6.50020 6.53615 6.63567 6.67783 6.70936 6.77496 6.87793 6.99824 7.03850 7.18352 7.23558 7.55203 7.63257 7.63629 7.84351 8.21820 8.76532 9.42122 9.59385 10.86637 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019764 B = 0.003415 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.405833 B = 8197.794684 C = 8784.492986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.038 4.038 3 C -0.093 4.093 4 C -0.094 4.094 5 C -0.006 4.006 6 C -0.185 4.185 7 C -0.069 4.069 8 C -0.164 4.164 9 C 0.392 3.608 10 O -0.488 6.488 11 C -0.285 4.285 12 C 0.057 3.943 13 C -0.100 4.100 14 C -0.112 4.112 15 C -0.044 4.044 16 H 0.067 0.933 17 C -0.081 4.081 18 H 0.074 0.926 19 C -0.114 4.114 20 C -0.121 4.121 21 C 0.265 3.735 22 O -0.590 6.590 23 C -0.530 4.530 24 H 0.067 0.933 25 C 0.068 3.932 26 N -0.897 5.897 27 Si 0.891 3.109 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.285 1.285 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.043 0.957 50 H 0.065 0.935 51 H 0.379 0.621 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 4.014 -10.613 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.038 4.038 3 C -0.130 4.130 4 C -0.130 4.130 5 C -0.006 4.006 6 C -0.185 4.185 7 C -0.106 4.106 8 C -0.202 4.202 9 C 0.276 3.724 10 O -0.369 6.369 11 C -0.304 4.304 12 C 0.056 3.944 13 C -0.137 4.137 14 C -0.149 4.149 15 C -0.062 4.062 16 H 0.085 0.915 17 C -0.100 4.100 18 H 0.093 0.907 19 C -0.151 4.151 20 C -0.160 4.160 21 C 0.225 3.775 22 O -0.399 6.399 23 C -0.568 4.568 24 H 0.085 0.915 25 C -0.133 4.133 26 N -0.538 5.538 27 Si 0.720 3.280 28 H -0.198 1.198 29 H -0.210 1.210 30 H -0.211 1.211 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.084 0.916 51 H 0.230 0.770 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.924 4.585 -11.387 13.630 hybrid contribution 1.484 -0.287 0.710 1.670 sum -4.440 4.298 -10.676 12.336 Atomic orbital electron populations 1.21732 0.95494 1.01078 0.99755 1.20896 0.94277 0.94178 0.94438 1.21485 0.98795 0.95307 0.97418 1.20799 1.01566 0.97730 0.92937 1.22622 0.90281 0.94830 0.92864 1.20328 1.06993 0.95563 0.95666 1.20533 1.02112 0.91470 0.96502 1.22028 1.02999 1.00241 0.94938 1.20709 0.75145 0.89971 0.86543 1.90562 1.39165 1.75187 1.32018 1.22188 1.12410 0.95910 0.99850 1.21514 0.85835 0.95145 0.91950 1.20976 1.03149 0.90573 0.98969 1.21672 0.98671 1.00205 0.94354 1.19000 0.97377 0.91058 0.98793 0.91530 1.20985 0.99900 0.95943 0.93157 0.90726 1.22195 0.99718 0.94495 0.98712 1.23046 1.01034 1.00003 0.91891 1.18898 0.86766 0.88783 0.83034 1.86113 1.48955 1.73669 1.31189 1.21898 1.03325 1.12046 1.19580 0.91527 1.25001 0.97788 0.94407 0.96135 1.69645 1.39010 1.18364 1.26776 0.86550 0.83950 0.78897 0.78648 1.19755 1.21003 1.21083 0.93829 0.93301 0.92854 0.91055 0.91332 0.90116 0.90960 0.90757 0.89474 0.89165 0.88536 0.85440 0.89330 0.89476 0.89943 0.90713 0.92578 0.93327 0.93774 0.91592 0.77016 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 5.91 37.16 0.22 -1.85 16 2 C -0.04 -0.67 0.52 -153.93 -0.08 -0.75 16 3 C -0.09 -1.54 4.07 -26.91 -0.11 -1.65 16 4 C -0.09 -1.21 3.73 -27.98 -0.10 -1.31 16 5 C -0.01 -0.07 3.99 -101.20 -0.40 -0.48 16 6 C -0.19 -2.13 5.48 -102.80 -0.56 -2.69 16 7 C -0.07 -0.70 5.74 -27.70 -0.16 -0.86 16 8 C -0.16 -1.72 6.09 -27.86 -0.17 -1.89 16 9 C 0.39 5.15 6.70 -33.67 -0.23 4.93 16 10 O -0.49 -7.99 17.78 5.40 0.10 -7.89 16 11 C -0.28 -3.39 9.45 -39.63 -0.37 -3.77 16 12 C 0.06 0.63 5.81 -102.41 -0.59 0.04 16 13 C -0.10 -0.96 5.73 -27.74 -0.16 -1.12 16 14 C -0.11 -1.24 4.52 -26.92 -0.12 -1.36 16 15 C -0.04 -0.57 1.57 -94.52 -0.15 -0.72 16 16 H 0.07 0.84 7.80 -51.93 -0.41 0.44 16 17 C -0.08 -1.30 1.92 -91.60 -0.18 -1.47 16 18 H 0.07 1.31 7.80 -51.93 -0.40 0.90 16 19 C -0.11 -1.89 5.13 -25.48 -0.13 -2.02 16 20 C -0.12 -2.56 5.57 -24.58 -0.14 -2.70 16 21 C 0.26 5.82 0.69 -90.92 -0.06 5.76 16 22 O -0.59 -14.14 11.70 -35.23 -0.41 -14.55 16 23 C -0.53 -12.87 7.62 -34.44 -0.26 -13.13 16 24 H 0.07 1.60 5.57 -52.49 -0.29 1.30 16 25 C 0.07 1.70 5.02 -17.82 -0.09 1.61 16 26 N -0.90 -22.92 10.75 55.43 0.60 -22.33 16 27 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 31 H 0.04 0.63 3.75 -51.93 -0.19 0.43 16 32 H 0.05 0.85 7.14 -51.93 -0.37 0.48 16 33 H 0.05 0.96 7.88 -51.93 -0.41 0.55 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.19 6.48 -51.93 -0.34 0.86 16 36 H 0.08 1.00 7.44 -51.92 -0.39 0.62 16 37 H 0.07 0.81 6.98 -51.93 -0.36 0.45 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.79 5.89 -51.93 -0.31 0.48 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.87 6.63 -51.93 -0.34 0.53 16 46 H 0.07 0.88 6.45 -51.93 -0.34 0.54 16 47 H 0.06 0.86 6.04 -51.93 -0.31 0.55 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.04 0.97 7.98 -51.93 -0.41 0.55 16 50 H 0.07 1.55 7.26 -51.93 -0.38 1.17 16 51 H 0.38 9.56 7.06 45.56 0.32 9.88 16 52 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -26.90 367.87 -10.50 -37.40 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.45 Total: 12.50 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -3.85 Total: -25.45 kcal Atomic # 7 Polarization: -22.92 SS G_CDS: 0.60 Total: -22.33 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.32 Total: -22.45 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.90 -10.50 -37.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011679310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.484 kcal (2) G-P(sol) polarization free energy of solvation -26.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds