Wall clock time and date at job start Tue Mar 31 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47297 * 2 1 4 4 C 1.47201 * 109.47139 * 119.99789 * 2 1 3 5 5 C 2.64606 * 109.47135 * 119.99761 * 2 1 3 6 6 C 4.11801 * 109.47028 * 119.99725 * 2 1 3 7 7 N 1.46904 * 109.47289 * 192.29655 * 6 5 4 8 8 C 1.46850 * 110.99625 * 65.78603 * 7 6 5 9 9 C 1.53036 * 109.52006 * 185.84070 * 8 7 6 10 10 C 1.53118 * 109.28146 * 300.82597 * 9 8 7 11 11 C 1.53118 * 109.15206 * 57.65991 * 10 9 8 12 12 C 1.46845 * 111.00477 * 189.99991 * 7 6 5 13 13 H 1.08995 * 109.45944 * 294.16804 * 12 7 6 14 14 C 1.50706 * 109.45838 * 54.14257 * 12 7 6 15 15 C 1.38675 * 120.41529 * 220.02067 * 14 12 7 16 16 C 1.38631 * 118.41792 * 179.97438 * 15 14 12 17 17 C 1.38221 * 119.16077 * 0.25627 * 16 15 14 18 18 N 1.31861 * 120.76518 * 359.45246 * 17 16 15 19 19 C 1.31882 * 121.72456 * 0.58353 * 18 17 16 20 20 O 1.42905 * 109.47473 * 239.99531 * 2 1 3 21 21 C 1.42900 * 113.99371 * 59.99956 * 20 2 1 22 22 C 1.50706 * 109.46658 * 180.02562 * 21 20 2 23 23 H 1.08000 * 120.00079 * 0.02562 * 22 21 20 24 24 C 1.37872 * 119.99800 * 180.02562 * 22 21 20 25 25 N 1.31515 * 120.00288 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99786 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47386 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47143 * 120.00398 * 26 24 22 29 29 H 1.48504 * 109.47243 * 239.99709 * 26 24 22 30 30 H 1.08995 * 109.47259 * 300.00021 * 1 2 3 31 31 H 1.08993 * 109.47124 * 60.00242 * 1 2 3 32 32 H 1.09003 * 109.46994 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47084 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46554 * 299.99507 * 3 2 1 35 35 H 1.08995 * 109.46983 * 59.99810 * 3 2 1 36 36 H 1.08995 * 109.47510 * 72.29648 * 6 5 4 37 37 H 1.09002 * 109.47462 * 312.29382 * 6 5 4 38 38 H 1.08997 * 109.46600 * 305.86119 * 8 7 6 39 39 H 1.09007 * 109.45913 * 65.83058 * 8 7 6 40 40 H 1.09001 * 109.50266 * 60.76582 * 9 8 7 41 41 H 1.09000 * 109.50489 * 180.88143 * 9 8 7 42 42 H 1.09005 * 109.52603 * 177.55840 * 10 9 8 43 43 H 1.09001 * 109.52071 * 297.74465 * 10 9 8 44 44 H 1.09008 * 109.49490 * 182.39575 * 11 10 9 45 45 H 1.08997 * 109.51216 * 62.27587 * 11 10 9 46 46 H 1.07998 * 120.79161 * 359.96013 * 15 14 12 47 47 H 1.08002 * 120.41548 * 179.97438 * 16 15 14 48 48 H 1.08002 * 119.62066 * 179.74470 * 17 16 15 49 49 H 1.07993 * 119.62089 * 179.70697 * 19 18 17 50 50 H 1.08993 * 109.47443 * 300.00047 * 21 20 2 51 51 H 1.09001 * 109.47188 * 60.00677 * 21 20 2 52 52 H 0.96996 * 119.99996 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1605 6 6 2.9026 -1.9411 3.3625 7 7 4.0317 -1.1940 3.9326 8 6 3.5968 0.1166 4.4323 9 6 4.8170 0.9223 4.8839 10 6 5.5512 0.1531 5.9855 11 6 5.9507 -1.2263 5.4544 12 6 4.6976 -1.9699 4.9866 13 1 4.0166 -2.0990 5.8278 14 6 5.0882 -3.3208 4.4448 15 6 4.9471 -4.4580 5.2258 16 6 5.3187 -5.6795 4.6858 17 6 5.8190 -5.7224 3.3980 18 7 5.9341 -4.6210 2.6821 19 6 5.5910 -3.4420 3.1634 20 8 2.0064 -0.6737 -1.1667 21 6 1.5847 -0.0774 -2.3950 22 6 2.1411 -0.8654 -3.5529 23 1 2.7550 -1.7348 -3.3691 24 6 1.8665 -0.4764 -4.8468 25 7 1.1194 0.5826 -5.0706 26 14 2.5568 -1.4526 -6.2820 27 1 3.3599 -2.5903 -5.7662 28 1 1.4392 -1.9718 -7.1107 29 1 3.4195 -0.5723 -7.1102 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.2300 -2.9455 3.0940 37 1 2.1007 -2.0048 4.0980 38 1 3.0798 0.6549 3.6379 39 1 2.9208 -0.0225 5.2761 40 1 5.4868 1.0736 4.0373 41 1 4.4925 1.8889 5.2692 42 1 6.4452 0.7029 6.2799 43 1 4.8945 0.0356 6.8475 44 1 6.4364 -1.7949 6.2476 45 1 6.6381 -1.1088 4.6167 46 1 4.5572 -4.3936 6.2309 47 1 5.2228 -6.5856 5.2656 48 1 6.1147 -6.6695 2.9714 49 1 5.7040 -2.5612 2.5489 50 1 0.4959 -0.0790 -2.4447 51 1 1.9492 0.9486 -2.4448 52 1 0.9260 0.8560 -5.9809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012342069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:32 Heat of formation + Delta-G solvation = 35.741775 kcal Electronic energy + Delta-G solvation = -29532.164607 eV Core-core repulsion = 25690.749669 eV Total energy + Delta-G solvation = -3841.414938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.82779 -39.00178 -38.04305 -34.74258 -33.65449 -33.22034 -32.30721 -32.04565 -30.62513 -29.53684 -27.37643 -26.92562 -26.89784 -24.35758 -23.87878 -23.47936 -22.78327 -21.65782 -20.43792 -19.93870 -17.39078 -17.31367 -16.69646 -16.39386 -16.08730 -15.54639 -15.10682 -15.01704 -14.82346 -14.45677 -14.35945 -14.24077 -14.21894 -13.66277 -13.53883 -13.34356 -13.26572 -12.99822 -12.76513 -12.74567 -12.63566 -12.08404 -11.93124 -11.58028 -11.50525 -11.48139 -11.04845 -11.01610 -10.91021 -10.81706 -10.78992 -10.72246 -10.58852 -10.04553 -10.01483 -9.83533 -9.75296 -9.54776 -9.08859 -8.93953 -8.81722 -8.57063 -8.11493 -6.09100 -4.09709 0.89635 1.07934 2.79217 2.92355 3.31820 3.38431 3.46309 3.61247 3.78983 4.13731 4.30784 4.42396 4.49349 4.55543 4.59116 4.67211 4.75219 4.78212 4.86855 4.97093 5.06682 5.13558 5.23781 5.27359 5.27685 5.34868 5.37989 5.42531 5.43256 5.53828 5.60235 5.65676 5.66185 5.67315 5.78892 5.84823 5.87470 5.91724 5.97840 6.01652 6.10949 6.12466 6.22519 6.40148 6.52471 6.61626 6.67984 6.78371 6.85019 7.14712 7.46600 7.82475 7.87052 7.93968 8.17073 8.58733 9.03459 9.54686 11.02378 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.002596 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.917547 B =10781.358201 C =12439.275385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.220 3.780 3 C -0.168 4.168 4 C -0.118 4.118 5 C -0.193 4.193 6 C 0.177 3.823 7 N -0.528 5.528 8 C 0.057 3.943 9 C -0.118 4.118 10 C -0.120 4.120 11 C -0.107 4.107 12 C 0.134 3.866 13 H 0.052 0.948 14 C -0.139 4.139 15 C -0.073 4.073 16 C -0.177 4.177 17 C 0.096 3.904 18 N -0.482 5.482 19 C 0.129 3.871 20 O -0.378 6.378 21 C 0.191 3.809 22 C -0.513 4.513 23 H 0.067 0.933 24 C 0.057 3.943 25 N -0.899 5.899 26 Si 0.906 3.094 27 H -0.270 1.270 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.154 0.846 49 H 0.165 0.835 50 H 0.012 0.988 51 H 0.012 0.988 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -4.226 27.458 28.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.180 3.820 3 C -0.225 4.225 4 C -0.120 4.120 5 C -0.194 4.194 6 C 0.051 3.949 7 N -0.253 5.253 8 C -0.070 4.070 9 C -0.156 4.156 10 C -0.158 4.158 11 C -0.145 4.145 12 C 0.025 3.975 13 H 0.070 0.930 14 C -0.142 4.142 15 C -0.100 4.100 16 C -0.197 4.197 17 C -0.060 4.060 18 N -0.190 5.190 19 C -0.028 4.028 20 O -0.299 6.299 21 C 0.117 3.883 22 C -0.551 4.551 23 H 0.085 0.915 24 C -0.144 4.144 25 N -0.538 5.538 26 Si 0.733 3.267 27 H -0.194 1.194 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.171 0.829 49 H 0.182 0.818 50 H 0.029 0.971 51 H 0.030 0.970 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.225 -4.261 26.099 27.413 hybrid contribution -0.896 -0.369 0.629 1.155 sum 6.329 -4.630 26.727 27.854 Atomic orbital electron populations 1.22353 0.95038 1.02865 1.02470 1.17909 0.92122 0.89787 0.82164 1.22330 1.02299 0.95510 1.02382 1.21955 0.98232 0.97303 0.94482 1.21595 1.01246 0.99968 0.96565 1.18837 0.90901 0.95736 0.89413 1.61849 1.27560 1.03423 1.32460 1.22118 0.96544 0.89521 0.98823 1.21611 0.97227 0.97893 0.98887 1.21593 1.00400 0.95806 0.97982 1.21630 0.96294 0.95487 1.01058 1.20435 0.95989 0.89172 0.91890 0.93012 1.20800 1.01829 0.95159 0.96384 1.21432 0.96945 0.91952 0.99630 1.22091 1.01608 0.98520 0.97487 1.22860 0.94876 0.97206 0.91088 1.67840 1.15455 0.98878 1.36837 1.22876 0.91706 0.95581 0.92652 1.88041 1.74435 1.54041 1.13352 1.20326 0.94835 0.93907 0.79226 1.21109 1.31714 1.12789 0.89495 0.91501 1.24920 0.95284 0.95394 0.98820 1.69963 1.37926 1.24917 1.21020 0.86300 0.78780 0.79983 0.81592 1.19413 1.20867 1.20818 0.92457 0.90548 0.91915 0.91740 0.90601 0.92502 0.88702 0.92979 0.89920 0.94820 0.90665 0.91375 0.91498 0.92269 0.91392 0.90529 0.85135 0.84903 0.82892 0.81794 0.97054 0.96989 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 8.21 37.15 0.30 -2.73 16 2 C 0.22 4.41 1.04 -93.41 -0.10 4.31 16 3 C -0.17 -2.99 8.21 37.16 0.30 -2.68 16 4 C -0.12 -2.21 12.16 -37.12 -0.45 -2.66 16 5 C -0.19 -3.16 12.34 -37.12 -0.46 -3.62 16 6 C 0.18 2.20 5.06 -6.61 -0.03 2.17 16 7 N -0.53 -5.71 3.84 -231.57 -0.89 -6.60 16 8 C 0.06 0.56 5.30 -3.83 -0.02 0.54 16 9 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 10 C -0.12 -0.83 6.00 -26.61 -0.16 -0.99 16 11 C -0.11 -0.81 5.35 -26.65 -0.14 -0.96 16 12 C 0.13 1.16 2.07 -68.88 -0.14 1.02 16 13 H 0.05 0.40 8.03 -51.93 -0.42 -0.01 16 14 C -0.14 -1.34 3.62 -104.48 -0.38 -1.72 16 15 C -0.07 -0.59 9.82 -39.28 -0.39 -0.97 16 16 C -0.18 -1.42 10.11 -39.44 -0.40 -1.82 16 17 C 0.10 0.97 11.18 -17.54 -0.20 0.77 16 18 N -0.48 -6.34 10.36 -13.25 -0.14 -6.47 16 19 C 0.13 1.58 9.22 -17.55 -0.16 1.41 16 20 O -0.38 -9.58 9.93 -35.23 -0.35 -9.93 16 21 C 0.19 5.23 4.89 36.01 0.18 5.40 16 22 C -0.51 -15.34 9.43 -34.44 -0.32 -15.67 16 23 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 24 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 25 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 26 Si 0.91 22.19 29.54 -169.99 -5.02 17.16 16 27 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.42 6.54 -51.93 -0.34 1.08 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.41 6.54 -51.93 -0.34 1.07 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.23 5.75 -51.93 -0.30 0.94 16 37 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 38 H 0.08 0.96 7.11 -51.93 -0.37 0.59 16 39 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 48 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.16 2.18 7.72 -52.49 -0.41 1.77 16 50 H 0.01 0.33 6.42 -51.93 -0.33 -0.01 16 51 H 0.01 0.34 6.42 -51.93 -0.33 0.01 16 52 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 416.35 15.07 6.27 6.27 Total: -1.00 -33.09 416.35 -10.93 -44.03 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.72 Total: -0.63 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.82 Total: -17.75 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.29 Total: -39.16 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.35 Total: -9.93 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.09 -10.93 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012342069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.769 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds