Wall clock time and date at job start Tue Mar 31 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40555 * 120.61281 * 273.03917 * 3 2 1 5 5 N 1.38076 * 119.46277 * 359.70660 * 4 3 2 6 6 N 1.32368 * 121.07003 * 179.97438 * 4 3 2 7 7 C 1.32410 * 122.53747 * 0.02562 * 6 4 3 8 8 N 1.38066 * 119.46774 * 180.02562 * 7 6 4 9 9 C 1.46959 * 111.00028 * 59.58826 * 8 7 6 10 10 C 1.53054 * 109.36225 * 176.81501 * 9 8 7 11 11 N 1.46953 * 109.36870 * 58.39839 * 10 9 8 12 12 C 1.46896 * 111.00248 * 176.80931 * 11 10 9 13 13 C 1.52999 * 109.47521 * 199.39468 * 12 11 10 14 14 O 1.42911 * 109.46597 * 63.25255 * 13 12 11 15 15 C 1.46956 * 110.88326 * 300.68575 * 11 10 9 16 16 C 1.46956 * 110.99669 * 295.79132 * 8 7 6 17 17 C 1.40522 * 121.06736 * 359.97438 * 7 6 4 18 18 C 1.43200 * 120.61188 * 180.02562 * 17 7 6 19 19 N 5.98344 * 146.56722 * 92.99412 * 2 1 3 20 20 C 1.42278 * 120.60945 * 93.02300 * 3 2 1 21 21 C 1.40453 * 121.11871 * 0.04025 * 20 3 2 22 22 H 1.08002 * 120.00119 * 225.02213 * 21 20 3 23 23 C 1.40523 * 119.99990 * 45.01417 * 21 20 3 24 24 N 1.30491 * 119.99799 * 18.29156 * 23 21 20 25 25 Si 1.86800 * 119.99965 * 198.29073 * 23 21 20 26 26 H 1.48494 * 109.47291 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46962 * 120.00378 * 25 23 21 28 28 H 1.48497 * 109.46752 * 240.00076 * 25 23 21 29 29 H 0.97001 * 120.00173 * 359.97438 * 5 4 3 30 30 H 0.96997 * 119.99573 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.48920 * 296.77559 * 9 8 7 32 32 H 1.08993 * 109.48696 * 56.84879 * 9 8 7 33 33 H 1.09003 * 109.48848 * 298.43345 * 10 9 8 34 34 H 1.08996 * 109.48959 * 178.37448 * 10 9 8 35 35 H 1.08999 * 109.47198 * 319.39932 * 12 11 10 36 36 H 1.09008 * 109.46853 * 79.39587 * 12 11 10 37 37 H 1.08995 * 109.47580 * 183.24945 * 13 12 11 38 38 H 1.09000 * 109.47108 * 303.26250 * 13 12 11 39 39 H 0.96701 * 113.99367 * 180.02562 * 14 13 12 40 40 H 1.09009 * 109.48517 * 299.34635 * 15 11 10 41 41 H 1.09001 * 109.49338 * 179.28576 * 15 11 10 42 42 H 1.08999 * 109.48997 * 303.15167 * 16 8 7 43 43 H 1.09003 * 109.49237 * 63.20076 * 16 8 7 44 44 H 0.96996 * 119.99598 * 184.86743 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 -0.0632 1.2080 5 7 2.5950 -0.1208 2.4033 6 7 4.6074 -0.0636 1.2185 7 6 5.3285 -0.0045 0.1095 8 7 6.7065 -0.0094 0.1942 9 6 7.1891 -1.2299 0.8555 10 6 8.7196 -1.2341 0.8585 11 7 9.2090 -0.0343 1.5517 12 6 10.6751 -0.0396 1.6420 13 6 11.1216 0.9193 2.7474 14 8 10.6287 0.4569 4.0067 15 6 8.7263 1.1861 0.8906 16 6 7.1958 1.1904 0.8876 17 6 4.7138 0.0622 -1.1524 18 6 5.5031 0.1253 -2.3456 19 7 6.1294 0.1722 -3.2921 20 6 3.2924 0.0655 -1.2228 21 6 2.6272 0.1313 -2.4580 22 1 2.9535 -0.4875 -3.2808 23 6 1.5368 1.0022 -2.6233 24 7 1.3578 1.9892 -1.7886 25 14 0.3438 0.7472 -4.0379 26 1 0.7654 -0.4331 -4.8343 27 1 -1.0210 0.5183 -3.4992 28 1 0.3382 1.9532 -4.9042 29 1 1.6250 -0.1166 2.4048 30 1 3.0812 -0.1654 3.2414 31 1 6.8235 -1.2562 1.8820 32 1 6.8241 -2.1041 0.3165 33 1 9.0853 -1.2353 -0.1684 34 1 9.0798 -2.1244 1.3740 35 1 11.0213 -1.0470 1.8730 36 1 11.0989 0.2808 0.6901 37 1 12.2104 0.9592 2.7760 38 1 10.7265 1.9150 2.5462 39 1 10.8739 1.0182 4.7550 40 1 9.0920 1.2125 -0.1360 41 1 9.0913 2.0604 1.4295 42 1 6.8356 2.0806 0.3720 43 1 6.8298 1.1917 1.9144 44 1 0.5677 2.5473 -1.8599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012538464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:08 Heat of formation + Delta-G solvation = 57.449148 kcal Electronic energy + Delta-G solvation = -29727.175401 eV Core-core repulsion = 25679.621079 eV Total energy + Delta-G solvation = -4047.554322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.04129 -38.71895 -37.07247 -35.85191 -35.55177 -34.81035 -34.26774 -32.91598 -31.20832 -30.82759 -29.83506 -28.35132 -26.67271 -25.61832 -23.52429 -22.51035 -22.02920 -21.45767 -19.73349 -19.06296 -18.01983 -17.59405 -17.30536 -16.33341 -15.96822 -15.66061 -15.36780 -15.16066 -14.80371 -14.61096 -14.53760 -14.12522 -13.77576 -13.61474 -13.40653 -13.11319 -12.84553 -12.34295 -12.29284 -12.19554 -12.04849 -11.90351 -11.79210 -11.78338 -11.63811 -11.51651 -11.31043 -11.12772 -11.05605 -10.89618 -10.72058 -10.52119 -10.43935 -10.08589 -9.73219 -9.44585 -8.99885 -8.33432 -8.24283 -8.12492 -7.24338 -7.03473 -5.07827 1.65532 2.34573 2.95857 3.00328 3.03795 3.71974 3.78501 3.82038 3.88847 3.91471 4.06176 4.15824 4.21161 4.40999 4.57477 4.91974 4.92650 5.09621 5.14976 5.20514 5.32154 5.35194 5.40283 5.45782 5.50818 5.59096 5.61401 5.62193 5.69828 5.76710 5.92325 6.03970 6.21105 6.28543 6.39341 6.62277 6.68398 6.88949 7.01926 7.04971 7.16566 7.24899 7.55665 7.67097 7.69754 7.96784 8.10852 8.14104 8.33298 8.79952 8.84598 9.02563 9.73803 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.017638 B = 0.003197 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.109856 B = 8755.597456 C = 9754.531736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.323 3.677 3 C -0.223 4.223 4 C 0.484 3.516 5 N -0.850 5.850 6 N -0.629 5.629 7 C 0.408 3.592 8 N -0.490 5.490 9 C 0.067 3.933 10 C 0.060 3.940 11 N -0.528 5.528 12 C 0.054 3.946 13 C 0.083 3.917 14 O -0.557 6.557 15 C 0.057 3.943 16 C 0.067 3.933 17 C -0.186 4.186 18 C 0.323 3.677 19 N -0.494 5.494 20 C 0.237 3.763 21 C -0.451 4.451 22 H 0.099 0.901 23 C 0.088 3.912 24 N -0.754 5.754 25 Si 0.902 3.098 26 H -0.253 1.253 27 H -0.263 1.263 28 H -0.268 1.268 29 H 0.403 0.597 30 H 0.398 0.602 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.371 0.629 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.828 -0.881 9.503 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C 0.012 3.988 3 C -0.237 4.237 4 C 0.245 3.755 5 N -0.391 5.391 6 N -0.355 5.355 7 C 0.178 3.822 8 N -0.213 5.213 9 C -0.060 4.060 10 C -0.068 4.068 11 N -0.253 5.253 12 C -0.075 4.075 13 C 0.005 3.995 14 O -0.361 6.361 15 C -0.071 4.071 16 C -0.060 4.060 17 C -0.199 4.199 18 C 0.010 3.990 19 N -0.173 5.173 20 C 0.225 3.775 21 C -0.480 4.480 22 H 0.117 0.883 23 C -0.137 4.137 24 N -0.376 5.376 25 Si 0.725 3.275 26 H -0.177 1.177 27 H -0.188 1.188 28 H -0.193 1.193 29 H 0.232 0.768 30 H 0.227 0.773 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.217 0.783 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.135 -1.077 8.462 14.833 hybrid contribution -0.749 0.677 -0.377 1.077 sum 11.386 -0.401 8.085 13.970 Atomic orbital electron populations 1.80992 1.12479 1.14752 1.09823 1.24955 0.92028 0.90458 0.91348 1.16205 0.85032 1.29541 0.92875 1.17665 0.87374 0.85776 0.84691 1.42106 1.08794 1.82589 1.05645 1.66854 1.05417 1.31978 1.31225 1.18877 0.87572 0.88693 0.87034 1.60148 1.05457 1.03609 1.52130 1.22086 0.93487 0.91703 0.98755 1.22184 0.95128 0.92689 0.96821 1.62090 1.08582 1.02396 1.52229 1.22122 0.88547 1.00614 0.96177 1.22161 0.95980 0.96814 0.84574 1.86624 1.79101 1.54166 1.16243 1.22230 0.95234 0.92649 0.96974 1.22081 0.93434 0.92182 0.98288 1.16556 0.91214 1.25578 0.86576 1.24934 0.91025 0.91358 0.91657 1.80980 1.11275 1.13538 1.11475 1.17028 0.87725 0.81145 0.91578 1.19582 1.11316 1.19365 0.97693 0.88341 1.25928 0.96896 0.92809 0.98100 1.69545 1.24673 1.09820 1.33567 0.86289 0.80371 0.80132 0.80741 1.17655 1.18796 1.19321 0.76751 0.77303 0.92007 0.90358 0.94150 0.90305 0.90294 0.93282 0.93839 0.93750 0.78302 0.94069 0.90517 0.90303 0.92166 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.49 18.53 41.84 0.78 -10.72 16 2 C 0.32 7.21 10.51 -22.47 -0.24 6.97 16 3 C -0.22 -4.81 5.51 -105.55 -0.58 -5.39 16 4 C 0.48 9.18 7.74 -155.40 -1.20 7.98 16 5 N -0.85 -12.89 8.96 31.23 0.28 -12.61 16 6 N -0.63 -11.74 9.51 -11.33 -0.11 -11.84 16 7 C 0.41 7.83 5.32 -155.39 -0.83 7.00 16 8 N -0.49 -8.23 4.01 -172.88 -0.69 -8.93 16 9 C 0.07 0.99 5.40 -3.76 -0.02 0.97 16 10 C 0.06 0.76 5.57 -3.77 -0.02 0.74 16 11 N -0.53 -6.54 4.56 -234.46 -1.07 -7.61 16 12 C 0.05 0.53 5.39 -3.83 -0.02 0.51 16 13 C 0.08 0.71 7.22 37.16 0.27 0.98 16 14 O -0.56 -5.59 13.58 -35.23 -0.48 -6.07 16 15 C 0.06 0.72 5.43 -3.77 -0.02 0.70 16 16 C 0.07 1.02 5.45 -3.77 -0.02 1.00 16 17 C -0.19 -4.00 5.84 -105.55 -0.62 -4.61 16 18 C 0.32 7.17 13.97 -22.48 -0.31 6.86 16 19 N -0.49 -11.33 18.54 41.83 0.78 -10.56 16 20 C 0.24 5.41 5.32 -105.95 -0.56 4.85 16 21 C -0.45 -10.70 7.90 -37.89 -0.30 -11.00 16 22 H 0.10 2.32 7.85 -52.49 -0.41 1.91 16 23 C 0.09 2.05 4.20 -17.26 -0.07 1.98 16 24 N -0.75 -18.01 11.29 55.58 0.63 -17.38 16 25 Si 0.90 18.42 29.60 -169.99 -5.03 13.39 16 26 H -0.25 -5.09 7.11 56.52 0.40 -4.69 16 27 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 28 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 29 H 0.40 5.94 7.62 -40.82 -0.31 5.63 16 30 H 0.40 5.08 8.94 -40.82 -0.37 4.72 16 31 H 0.06 0.97 7.90 -51.93 -0.41 0.56 16 32 H 0.08 1.16 8.13 -51.93 -0.42 0.73 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.88 8.00 -51.93 -0.42 0.47 16 35 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 36 H 0.05 0.45 8.00 -51.92 -0.42 0.03 16 37 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.04 0.37 6.77 -51.93 -0.35 0.02 16 39 H 0.37 2.04 9.12 45.56 0.42 2.46 16 40 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 41 H 0.08 0.85 6.73 -51.93 -0.35 0.50 16 42 H 0.08 1.24 8.13 -51.93 -0.42 0.81 16 43 H 0.06 0.96 7.98 -51.93 -0.41 0.55 16 44 H 0.29 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -28.26 376.42 -8.48 -36.75 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.68 Total: 10.38 kcal Atomic # 6 Polarization: 24.08 SS G_CDS: -4.55 Total: 19.53 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: 0.59 Total: -79.65 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.48 Total: -6.07 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.26 -8.48 -36.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012538464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.197 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds