Wall clock time and date at job start Tue Mar 31 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30309 * 126.35794 * 2 1 4 4 N 1.28503 * 110.15448 * 179.97438 * 3 2 1 5 5 C 1.31295 * 109.91922 * 0.02562 * 4 3 2 6 6 S 1.76204 * 126.50283 * 180.02562 * 5 4 3 7 7 C 1.80995 * 99.99915 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47293 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.46881 * 54.99844 * 8 7 6 10 10 C 1.47201 * 109.47013 * 295.00681 * 8 7 6 11 11 N 7.28495 * 154.83006 * 133.93161 * 2 1 3 12 12 C 1.52997 * 109.47504 * 175.00205 * 8 7 6 13 13 C 1.50701 * 109.47212 * 184.99949 * 12 8 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 8 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 8 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 N 1.36802 * 106.99453 * 0.26146 * 5 4 3 22 22 C 1.40245 * 127.17541 * 179.73841 * 21 5 4 23 23 C 1.38820 * 120.06305 * 244.74875 * 22 21 5 24 24 C 1.38124 * 119.93461 * 179.70284 * 23 22 21 25 25 C 1.38276 * 120.06419 * 0.59254 * 24 23 22 26 26 C 1.50699 * 119.93410 * 179.70353 * 25 24 23 27 27 C 1.38280 * 120.12905 * 359.68465 * 25 24 23 28 28 C 1.38122 * 120.06346 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.46824 * 90.02166 * 1 2 3 30 30 H 1.09001 * 109.46867 * 210.01914 * 1 2 3 31 31 H 1.08995 * 109.46781 * 330.02126 * 1 2 3 32 32 H 1.09003 * 109.46951 * 60.00483 * 7 6 5 33 33 H 1.08998 * 109.47323 * 300.00481 * 7 6 5 34 34 H 1.09002 * 109.47153 * 64.99951 * 12 8 7 35 35 H 1.09001 * 109.46832 * 305.00142 * 12 8 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.02846 * 359.97438 * 23 22 21 38 38 H 1.08000 * 119.96830 * 180.27552 * 24 23 22 39 39 H 1.09009 * 109.46807 * 269.97783 * 26 25 24 40 40 H 1.08995 * 109.47832 * 29.97750 * 26 25 24 41 41 H 1.08997 * 109.47341 * 149.98459 * 26 25 24 42 42 H 1.07995 * 119.96521 * 179.97438 * 27 25 24 43 43 H 1.07995 * 120.03232 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2795 1.0494 0.0000 4 7 3.5135 0.6908 0.0005 5 6 3.5986 -0.6194 0.0004 6 16 5.0799 -1.5735 0.0016 7 6 6.3094 -0.2452 0.0038 8 6 7.7144 -0.8507 0.0044 9 1 7.8155 -1.5351 -0.8379 10 6 7.9317 -1.5848 1.2617 11 7 8.1003 -2.1496 2.2313 12 6 8.7516 0.2671 -0.1194 13 6 10.1275 -0.3355 -0.2423 14 1 10.2498 -1.4085 -0.2334 15 6 11.2299 0.4831 -0.3671 16 7 11.0809 1.7897 -0.3784 17 14 12.9352 -0.2639 -0.5201 18 1 12.8323 -1.7449 -0.4811 19 1 13.5457 0.1557 -1.8072 20 1 13.7832 0.2035 0.6058 21 7 2.3190 -1.1031 -0.0063 22 6 1.9215 -2.4481 -0.0140 23 6 1.2366 -2.9646 -1.1055 24 6 0.8518 -4.2911 -1.1129 25 6 1.1374 -5.1013 -0.0294 26 6 0.7103 -6.5465 -0.0378 27 6 1.8144 -4.5881 1.0617 28 6 2.2070 -3.2639 1.0722 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3633 0.8901 0.5135 32 1 6.1780 0.3699 0.8940 33 1 6.1801 0.3710 -0.8860 34 1 8.7104 0.9009 0.7665 35 1 8.5367 0.8657 -1.0046 36 1 11.8566 2.3655 -0.4658 37 1 1.0088 -2.3308 -1.9498 38 1 0.3229 -4.6946 -1.9637 39 1 -0.2876 -6.6329 0.3924 40 1 0.6971 -6.9156 -1.0633 41 1 1.4122 -7.1363 0.5516 42 1 2.0357 -5.2232 1.9067 43 1 2.7360 -2.8638 1.9244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012550122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:48 Heat of formation + Delta-G solvation = 115.232541 kcal Electronic energy + Delta-G solvation = -25608.457199 eV Core-core repulsion = 21973.868672 eV Total energy + Delta-G solvation = -3634.588526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.121 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.15764 -39.86231 -36.83757 -35.56761 -34.03699 -32.69748 -32.26779 -31.89749 -31.52520 -28.38862 -27.62450 -27.03249 -24.16277 -23.58756 -23.14984 -22.18462 -21.84485 -20.88748 -18.77135 -17.18752 -16.86245 -16.66571 -16.37330 -15.97701 -15.40133 -15.07069 -14.71994 -14.47370 -14.26868 -14.06077 -14.03064 -13.91879 -13.39295 -13.14894 -12.92732 -12.83574 -12.74539 -12.61095 -12.30664 -12.19546 -11.97109 -11.73572 -11.64044 -11.48233 -11.20987 -11.09043 -10.86166 -10.72465 -10.58522 -10.44442 -10.23413 -9.93511 -9.61734 -9.51635 -9.28250 -9.07230 -8.48633 -7.65750 -6.11940 -4.16217 0.49446 0.82098 1.01422 1.48209 2.10100 2.37660 2.66368 3.08359 3.27615 3.35953 3.39937 3.47306 3.55897 4.09416 4.27928 4.33334 4.38575 4.42146 4.59532 4.60795 4.75091 4.81459 5.05985 5.09597 5.12098 5.14436 5.17097 5.24669 5.26282 5.37334 5.43238 5.47439 5.49038 5.55002 5.71080 5.80074 5.88915 5.91446 6.03670 6.20413 6.25459 6.32787 6.74736 7.38604 7.45783 7.81907 8.16403 8.30211 8.49841 8.87887 9.49519 10.98754 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.002581 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.861251 B =10844.952354 C =12178.127763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.184 3.816 3 N -0.280 5.280 4 N -0.284 5.284 5 C 0.172 3.828 6 S -0.006 6.006 7 C -0.091 4.091 8 C 0.023 3.977 9 H 0.113 0.887 10 C 0.235 3.765 11 N -0.457 5.457 12 C 0.037 3.963 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.283 1.283 21 N -0.423 5.423 22 C 0.103 3.897 23 C -0.095 4.095 24 C -0.109 4.109 25 C -0.070 4.070 26 C -0.118 4.118 27 C -0.106 4.106 28 C -0.091 4.091 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.031 0.969 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.135 0.865 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.920 -12.933 -2.389 29.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 N -0.119 5.119 4 N -0.127 5.127 5 C -0.202 4.202 6 S 0.224 5.776 7 C -0.241 4.241 8 C -0.001 4.001 9 H 0.130 0.870 10 C -0.082 4.082 11 N -0.133 5.133 12 C -0.002 4.002 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.209 1.209 21 N -0.115 5.115 22 C 0.012 3.988 23 C -0.114 4.114 24 C -0.127 4.127 25 C -0.070 4.070 26 C -0.175 4.175 27 C -0.124 4.124 28 C -0.111 4.111 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.153 0.847 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.000 -13.294 -0.938 29.217 hybrid contribution 0.480 0.090 -0.454 0.667 sum -25.520 -13.204 -1.392 28.767 Atomic orbital electron populations 1.20213 0.83478 1.04553 1.04025 1.25225 0.96871 0.81674 1.04694 1.73967 0.96503 1.23519 1.17924 1.74753 1.11790 1.06174 1.19937 1.27088 0.90508 0.95288 1.07276 1.85807 0.89726 1.09766 1.92276 1.23898 0.93119 0.98199 1.08869 1.19055 0.93154 0.98900 0.88997 0.86964 1.28929 0.92023 0.92756 0.94525 1.80961 1.09582 1.10882 1.11899 1.19237 0.90750 0.90894 0.99364 1.21124 0.90969 0.93170 1.51462 0.92311 1.24951 0.99322 0.94784 0.94844 1.69950 1.30497 1.02717 1.49479 0.86515 0.84187 0.79512 0.77747 1.19653 1.20783 1.20932 1.43828 1.05190 1.05713 1.56792 1.17550 1.03273 0.81499 0.96486 1.21112 0.97826 0.96015 0.96461 1.20947 1.00554 0.92530 0.98686 1.20131 0.96486 0.96674 0.93731 1.20857 1.01938 0.91407 1.03279 1.20988 0.98329 0.94405 0.98687 1.21209 0.98827 0.93989 0.97037 0.89563 0.90421 0.88477 0.87844 0.86451 0.95066 0.93732 0.92714 0.85157 0.84802 0.90683 0.91064 0.91006 0.84725 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.22 36.01 0.37 -0.11 16 2 C 0.18 2.33 8.01 -153.78 -1.23 1.10 16 3 N -0.28 -4.54 12.17 33.04 0.40 -4.14 16 4 N -0.28 -4.95 11.60 30.73 0.36 -4.60 16 5 C 0.17 2.65 8.01 -88.08 -0.71 1.94 16 6 S -0.01 -0.09 21.40 -107.50 -2.30 -2.39 16 7 C -0.09 -1.46 4.65 37.16 0.17 -1.28 16 8 C 0.02 0.42 2.21 -93.41 -0.21 0.21 16 9 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 10 C 0.24 4.78 13.30 -20.80 -0.28 4.50 16 11 N -0.46 -9.97 18.53 42.10 0.78 -9.19 16 12 C 0.04 0.86 4.42 -27.88 -0.12 0.74 16 13 C -0.53 -13.89 8.60 -34.44 -0.30 -14.19 16 14 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 N -0.42 -5.48 2.85 -57.62 -0.16 -5.64 16 22 C 0.10 1.07 5.20 -83.58 -0.43 0.64 16 23 C -0.09 -0.78 9.92 -39.41 -0.39 -1.17 16 24 C -0.11 -0.71 9.69 -39.61 -0.38 -1.09 16 25 C -0.07 -0.46 5.88 -104.59 -0.62 -1.07 16 26 C -0.12 -0.49 10.01 36.01 0.36 -0.13 16 27 C -0.11 -0.80 9.69 -39.61 -0.38 -1.18 16 28 C -0.09 -0.89 9.93 -39.41 -0.39 -1.28 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.48 7.96 -51.93 -0.41 0.07 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 33 H 0.12 1.80 8.14 -51.92 -0.42 1.37 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 40 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 41 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -33.11 393.31 -9.78 -42.89 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.86 Total: -3.61 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -4.64 Total: -10.75 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 2.11 Total: -48.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.30 Total: -2.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.11 -9.78 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012550122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.118 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds