Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30308 * 126.35702 * 2 1 4 4 N 1.28511 * 110.14558 * 179.97438 * 3 2 1 5 5 C 1.31294 * 109.92270 * 0.02562 * 4 3 2 6 6 S 1.76198 * 126.49876 * 179.97438 * 5 4 3 7 7 C 1.80995 * 100.00531 * 0.02563 * 6 5 4 8 8 C 1.52995 * 109.47269 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47002 * 304.99783 * 8 7 6 10 10 C 1.47196 * 109.47262 * 64.99831 * 8 7 6 11 11 N 7.28511 * 154.85648 * 226.03548 * 2 1 3 12 12 C 1.53006 * 109.46807 * 184.99873 * 8 7 6 13 13 C 1.50707 * 109.46754 * 174.99847 * 12 8 7 14 14 H 1.07997 * 119.99867 * 0.02562 * 13 12 8 15 15 C 1.37876 * 119.99453 * 180.02562 * 13 12 8 16 16 N 1.31512 * 120.00374 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99522 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47179 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46988 * 119.99996 * 17 15 13 20 20 H 1.48495 * 109.47098 * 239.99635 * 17 15 13 21 21 N 1.36790 * 106.99604 * 359.97438 * 5 4 3 22 22 C 1.40255 * 127.17938 * 179.97438 * 21 5 4 23 23 C 1.38812 * 120.06440 * 244.75457 * 22 21 5 24 24 C 1.38129 * 119.93487 * 179.71974 * 23 22 21 25 25 C 1.38278 * 120.05981 * 0.57683 * 24 23 22 26 26 C 1.50700 * 119.93140 * 179.70136 * 25 24 23 27 27 C 1.38275 * 120.12984 * 359.67397 * 25 24 23 28 28 C 1.38119 * 120.06743 * 0.04559 * 27 25 24 29 29 H 1.09000 * 109.47149 * 270.00310 * 1 2 3 30 30 H 1.09003 * 109.46733 * 29.99783 * 1 2 3 31 31 H 1.08996 * 109.47538 * 150.00347 * 1 2 3 32 32 H 1.09005 * 109.46918 * 300.00460 * 7 6 5 33 33 H 1.09006 * 109.47115 * 59.99755 * 7 6 5 34 34 H 1.08997 * 109.47228 * 294.99476 * 12 8 7 35 35 H 1.08994 * 109.47106 * 55.00309 * 12 8 7 36 36 H 0.96998 * 119.99638 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.03552 * 359.97438 * 23 22 21 38 38 H 1.07998 * 119.96788 * 180.26949 * 24 23 22 39 39 H 1.08995 * 109.47213 * 269.96929 * 26 25 24 40 40 H 1.09000 * 109.47522 * 29.97439 * 26 25 24 41 41 H 1.09005 * 109.46617 * 149.97437 * 26 25 24 42 42 H 1.08003 * 119.96336 * 180.02562 * 27 25 24 43 43 H 1.07995 * 120.03830 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2795 1.0494 0.0000 4 7 3.5135 0.6906 0.0005 5 6 3.5985 -0.6195 0.0004 6 16 5.0797 -1.5737 0.0003 7 6 6.3093 -0.2455 0.0013 8 6 7.7143 -0.8512 0.0020 9 1 7.8141 -1.5364 0.8438 10 6 7.9335 -1.5838 -1.2557 11 7 8.1018 -2.1488 -2.2279 12 6 8.7514 0.2666 0.1286 13 6 10.1270 -0.3363 0.2529 14 1 10.2493 -1.4092 0.2422 15 6 11.2293 0.4821 0.3802 16 7 11.0803 1.7887 0.3937 17 14 12.9346 -0.2652 0.5335 18 1 12.8318 -1.7459 0.4906 19 1 13.7836 0.2044 -0.5906 20 1 13.5438 0.1522 1.8218 21 7 2.3189 -1.1032 0.0003 22 6 1.9213 -2.4482 -0.0004 23 6 1.2326 -2.9692 -1.0873 24 6 0.8473 -4.2957 -1.0876 25 6 1.1365 -5.1012 -0.0016 26 6 0.7089 -6.5463 -0.0022 27 6 1.8178 -4.5836 1.0846 28 6 2.2107 -3.2595 1.0882 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 6.1793 0.3707 -0.8884 33 1 6.1788 0.3698 0.8916 34 1 8.7115 0.9012 -0.7567 35 1 8.5353 0.8642 1.0142 36 1 11.8559 2.3643 0.4829 37 1 1.0019 -2.3391 -1.9335 38 1 0.3153 -4.7027 -1.9348 39 1 -0.2873 -6.6306 0.4320 40 1 0.6917 -6.9198 -1.0261 41 1 1.4130 -7.1337 0.5871 42 1 2.0427 -5.2154 1.9313 43 1 2.7424 -2.8556 1.9369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012550125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = 114.906346 kcal Electronic energy + Delta-G solvation = -25603.652622 eV Core-core repulsion = 21969.049951 eV Total energy + Delta-G solvation = -3634.602671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.16086 -39.86473 -36.80749 -35.56972 -34.01105 -32.70531 -32.26635 -31.90161 -31.52257 -28.39062 -27.62483 -27.03680 -24.16337 -23.59866 -23.13982 -22.18473 -21.84764 -20.89976 -18.77040 -17.18948 -16.84226 -16.68746 -16.37356 -16.00062 -15.39324 -15.06461 -14.71704 -14.48250 -14.26986 -14.05604 -14.04034 -13.91704 -13.41207 -13.13358 -12.94645 -12.81367 -12.75893 -12.58419 -12.29240 -12.19432 -11.97134 -11.73563 -11.63931 -11.46960 -11.20702 -11.09117 -10.87209 -10.72260 -10.58547 -10.43538 -10.24020 -9.93828 -9.61593 -9.51727 -9.28258 -9.06472 -8.48662 -7.65907 -6.11946 -4.16248 0.49789 0.81822 1.01078 1.47869 2.09938 2.37356 2.66182 3.08344 3.27570 3.35982 3.39923 3.46739 3.55358 4.09194 4.27803 4.33091 4.38531 4.41486 4.59117 4.60686 4.75233 4.81255 5.04641 5.10327 5.11725 5.14017 5.17234 5.24681 5.26275 5.37253 5.43255 5.46818 5.49007 5.55163 5.71032 5.79369 5.88212 5.91118 6.03422 6.20308 6.25301 6.32585 6.74487 7.38483 7.45865 7.81905 8.16363 8.30915 8.49592 8.87877 9.49519 10.98738 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002580 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.921197 B =10852.135938 C =12175.219400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.184 3.816 3 N -0.280 5.280 4 N -0.284 5.284 5 C 0.172 3.828 6 S -0.006 6.006 7 C -0.091 4.091 8 C 0.023 3.977 9 H 0.113 0.887 10 C 0.234 3.766 11 N -0.457 5.457 12 C 0.037 3.963 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 N -0.423 5.423 22 C 0.103 3.897 23 C -0.097 4.097 24 C -0.108 4.108 25 C -0.071 4.071 26 C -0.118 4.118 27 C -0.105 4.105 28 C -0.091 4.091 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.031 0.969 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.135 0.865 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.896 -12.928 2.504 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 N -0.119 5.119 4 N -0.127 5.127 5 C -0.201 4.201 6 S 0.224 5.776 7 C -0.241 4.241 8 C 0.000 4.000 9 H 0.130 0.870 10 C -0.083 4.083 11 N -0.133 5.133 12 C -0.002 4.002 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 N -0.115 5.115 22 C 0.013 3.987 23 C -0.117 4.117 24 C -0.127 4.127 25 C -0.071 4.071 26 C -0.175 4.175 27 C -0.124 4.124 28 C -0.110 4.110 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.153 0.847 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.976 -13.289 1.044 29.197 hybrid contribution 0.471 0.089 0.415 0.634 sum -25.505 -13.200 1.458 28.756 Atomic orbital electron populations 1.20231 0.83490 1.04472 1.04166 1.25221 0.96870 0.81679 1.04683 1.73973 0.96496 1.23508 1.17913 1.74755 1.11788 1.06168 1.19950 1.27087 0.90505 0.95285 1.07258 1.85805 0.89717 1.09764 1.92272 1.23902 0.93118 0.98203 1.08876 1.19050 0.93139 0.98901 0.88943 0.86959 1.29026 0.92009 0.92751 0.94536 1.81063 1.09620 1.10844 1.11786 1.19239 0.90755 0.90896 0.99360 1.21125 0.90986 0.93176 1.51434 0.92307 1.24951 0.99314 0.94782 0.94845 1.69949 1.30500 1.02724 1.49473 0.86516 0.84195 0.79515 0.77745 1.19652 1.20939 1.20780 1.43821 1.05189 1.05720 1.56808 1.17558 1.03151 0.81511 0.96504 1.21123 0.97974 0.96035 0.96539 1.20952 1.00520 0.92546 0.98659 1.20131 0.96517 0.96670 0.93757 1.20857 1.01932 0.91404 1.03282 1.20985 0.98307 0.94392 0.98698 1.21195 0.98923 0.93981 0.96950 0.89529 0.88453 0.90436 0.87850 0.86431 0.95069 0.93720 0.92714 0.85202 0.84831 0.90675 0.91096 0.90990 0.84666 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.24 36.01 0.37 -0.12 16 2 C 0.18 2.33 8.01 -153.78 -1.23 1.10 16 3 N -0.28 -4.54 12.17 33.04 0.40 -4.14 16 4 N -0.28 -4.95 11.60 30.73 0.36 -4.60 16 5 C 0.17 2.65 8.01 -88.09 -0.71 1.94 16 6 S -0.01 -0.09 21.40 -107.50 -2.30 -2.39 16 7 C -0.09 -1.46 4.65 37.15 0.17 -1.28 16 8 C 0.02 0.43 2.21 -93.41 -0.21 0.22 16 9 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 10 C 0.23 4.79 13.31 -20.73 -0.28 4.52 16 11 N -0.46 -10.08 18.54 42.19 0.78 -9.30 16 12 C 0.04 0.86 4.42 -27.88 -0.12 0.74 16 13 C -0.53 -13.88 8.60 -34.44 -0.30 -14.18 16 14 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 N -0.42 -5.48 2.85 -57.63 -0.16 -5.65 16 22 C 0.10 1.08 5.30 -83.58 -0.44 0.64 16 23 C -0.10 -0.84 9.03 -39.41 -0.36 -1.19 16 24 C -0.11 -0.74 9.69 -39.61 -0.38 -1.12 16 25 C -0.07 -0.46 5.88 -104.59 -0.62 -1.08 16 26 C -0.12 -0.49 10.01 36.01 0.36 -0.13 16 27 C -0.11 -0.76 9.69 -39.61 -0.38 -1.14 16 28 C -0.09 -0.84 9.93 -39.41 -0.39 -1.23 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.46 7.12 -51.93 -0.37 0.09 16 32 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 33 H 0.12 1.78 8.14 -51.91 -0.42 1.36 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 41 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 42 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 43 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -33.27 391.71 -9.73 -43.00 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.82 Total: -3.66 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -4.61 Total: -10.67 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 2.11 Total: -48.30 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.30 Total: -2.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.27 -9.73 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012550125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.904 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds