Wall clock time and date at job start Tue Mar 31 2020 07:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.45021 * 2 1 4 4 C 1.53040 * 109.45871 * 119.96380 * 2 1 3 5 5 C 1.53190 * 109.31280 * 181.38871 * 4 2 1 6 6 N 1.46924 * 108.77702 * 305.36137 * 5 4 2 7 7 C 1.34777 * 120.63411 * 233.59258 * 6 5 4 8 8 O 1.21687 * 120.00074 * 174.78129 * 7 6 5 9 9 C 1.46377 * 119.99796 * 354.77529 * 7 6 5 10 10 H 1.07992 * 119.99909 * 5.01507 * 9 7 6 11 11 C 1.40047 * 119.99922 * 185.00894 * 9 7 6 12 12 N 1.30676 * 120.00066 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99947 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47225 * 90.00419 * 13 11 9 15 15 H 1.48509 * 109.47056 * 210.00264 * 13 11 9 16 16 H 1.48495 * 109.47224 * 329.99879 * 13 11 9 17 17 C 1.46931 * 118.73833 * 53.60423 * 6 5 4 18 18 C 1.53045 * 109.46169 * 240.02573 * 2 1 3 19 19 H 1.08996 * 109.52619 * 298.58677 * 18 2 1 20 20 N 1.46900 * 109.49331 * 58.66582 * 18 2 1 21 21 C 1.46902 * 111.00058 * 65.88275 * 20 18 2 22 22 C 1.38325 * 110.99894 * 189.83654 * 20 18 2 23 23 N 1.32988 * 120.84098 * 359.97438 * 22 20 18 24 24 C 1.32071 * 121.03508 * 180.02562 * 23 22 20 25 25 N 1.31554 * 122.71865 * 359.97438 * 24 23 22 26 26 C 1.33206 * 120.70819 * 0.02562 * 25 24 23 27 27 N 1.36772 * 134.30062 * 180.34606 * 26 25 24 28 28 H 0.97005 * 124.98778 * 359.92623 * 27 26 25 29 29 C 1.37094 * 110.02514 * 180.02562 * 27 26 25 30 30 C 1.34309 * 109.80947 * 359.58699 * 29 27 26 31 31 C 1.40306 * 120.83768 * 180.02562 * 22 20 18 32 32 H 1.09006 * 109.47076 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47241 * 299.96624 * 1 2 3 34 34 H 1.08998 * 109.46905 * 59.97071 * 1 2 3 35 35 H 1.08995 * 109.50232 * 61.43334 * 4 2 1 36 36 H 1.09006 * 109.49763 * 301.33559 * 4 2 1 37 37 H 1.09004 * 109.58622 * 185.57502 * 5 4 2 38 38 H 1.09000 * 109.59001 * 65.14849 * 5 4 2 39 39 H 0.96995 * 120.00160 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.58874 * 186.60768 * 17 6 5 41 41 H 1.09002 * 109.69758 * 66.25401 * 17 6 5 42 42 H 1.08997 * 109.47305 * 183.95616 * 21 20 18 43 43 H 1.08999 * 109.47155 * 303.95285 * 21 20 18 44 44 H 1.08994 * 109.47466 * 63.95242 * 21 20 18 45 45 H 1.08007 * 118.64319 * 180.02562 * 24 23 22 46 46 H 1.08002 * 125.09590 * 179.85598 * 29 27 26 47 47 H 1.07996 * 126.59037 * 180.21168 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6885 1.2644 6 7 4.0679 -1.2488 0.0002 7 6 4.9621 -2.2572 0.0003 8 8 5.2940 -2.7762 -1.0492 9 6 5.5341 -2.7281 1.2627 10 1 5.1806 -2.3238 2.1997 11 6 6.5396 -3.7028 1.2555 12 7 6.9676 -4.1917 0.1217 13 14 7.2691 -4.3042 2.8665 14 1 6.4893 -5.4680 3.3591 15 1 8.6810 -4.7104 2.6496 16 1 7.2171 -3.2123 3.8716 17 6 3.5714 -0.6887 -1.2642 18 6 2.0399 -0.7209 -1.2500 19 1 1.6978 -1.7558 -1.2387 20 7 1.5242 -0.0471 -2.4492 21 6 2.0798 1.3072 -2.5720 22 6 1.7804 -0.7929 -3.5856 23 7 2.4176 -1.9576 -3.5075 24 6 2.6646 -2.6726 -4.5901 25 7 2.3028 -2.2870 -5.7947 26 6 1.6592 -1.1348 -5.9756 27 7 1.1603 -0.4806 -7.0681 28 1 1.2119 -0.8035 -7.9814 29 6 0.5786 0.6997 -6.6834 30 6 0.6726 0.8404 -5.3510 31 6 1.3754 -0.3392 -4.8500 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5133 0.8902 34 1 -0.3633 0.5143 -0.8897 35 1 1.6978 -1.7555 1.2385 36 1 1.6572 -0.2206 2.1399 37 1 3.9416 -1.2844 2.0986 38 1 3.9142 0.3410 1.3674 39 1 7.6638 -4.8670 0.1166 40 1 3.9417 -1.2847 -2.0983 41 1 3.9143 0.3406 -1.3698 42 1 1.6287 1.8088 -3.4281 43 1 1.8642 1.8720 -1.6650 44 1 3.1587 1.2459 -2.7139 45 1 3.1844 -3.6131 -4.4820 46 1 0.1106 1.4080 -7.3511 47 1 0.3019 1.6671 -4.7632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013974878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:18 Heat of formation + Delta-G solvation = 78.544464 kcal Electronic energy + Delta-G solvation = -31269.167460 eV Core-core repulsion = 27260.642332 eV Total energy + Delta-G solvation = -4008.525128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90764 -39.86323 -38.33233 -37.01528 -35.40835 -32.89368 -32.46084 -32.06295 -31.24907 -29.59894 -28.92757 -27.66050 -26.63112 -25.67287 -23.55469 -23.20863 -22.51115 -21.75055 -20.77010 -19.85686 -18.74152 -18.69458 -17.34792 -16.46172 -16.17995 -15.60663 -15.54322 -15.21923 -14.76837 -14.45586 -14.31553 -14.16783 -14.05892 -13.64449 -13.62055 -13.30850 -13.16204 -12.88584 -12.56428 -12.53656 -12.16954 -11.95848 -11.77815 -11.69819 -11.39316 -11.12929 -10.97236 -10.85668 -10.65051 -10.54712 -10.52328 -10.29860 -10.16477 -9.90845 -9.71746 -9.07584 -8.98531 -8.87379 -8.78014 -7.86063 -7.46383 -7.04920 -6.12966 -4.57385 0.94814 1.52219 2.53283 2.64880 3.17069 3.23858 3.26552 3.54092 4.09941 4.13729 4.41776 4.53428 4.61290 4.66125 4.70447 4.92687 4.97892 5.10685 5.16635 5.33797 5.34216 5.43261 5.48769 5.54594 5.70026 5.74439 5.78598 5.88928 5.92358 5.96533 6.02337 6.11444 6.22182 6.23677 6.32328 6.37771 6.47037 6.56348 6.58717 6.70874 6.72745 6.80471 6.90052 7.05754 7.23797 7.51401 7.52650 7.74250 8.21455 8.43187 8.50134 9.08632 9.53822 10.65771 10.85356 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.003560 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.513166 B = 7863.729315 C = 9349.063545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.066 0.934 4 C -0.128 4.128 5 C 0.119 3.881 6 N -0.635 5.635 7 C 0.561 3.439 8 O -0.570 6.570 9 C -0.544 4.544 10 H 0.072 0.928 11 C 0.088 3.912 12 N -0.768 5.768 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.098 3.902 18 C 0.084 3.916 19 H 0.099 0.901 20 N -0.463 5.463 21 C 0.019 3.981 22 C 0.411 3.589 23 N -0.552 5.552 24 C 0.352 3.648 25 N -0.560 5.560 26 C 0.328 3.672 27 N -0.575 5.575 28 H 0.419 0.581 29 C 0.038 3.962 30 C -0.162 4.162 31 C -0.227 4.227 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.267 0.733 40 H 0.105 0.895 41 H 0.032 0.968 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.047 0.953 45 H 0.201 0.799 46 H 0.178 0.822 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.118 12.440 -8.094 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.167 4.167 5 C -0.005 4.005 6 N -0.374 5.374 7 C 0.366 3.634 8 O -0.451 6.451 9 C -0.581 4.581 10 H 0.090 0.910 11 C -0.131 4.131 12 N -0.397 5.397 13 Si 0.729 3.271 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.190 1.190 17 C -0.028 4.028 18 C -0.024 4.024 19 H 0.117 0.883 20 N -0.179 5.179 21 C -0.127 4.127 22 C 0.165 3.835 23 N -0.274 5.274 24 C 0.062 3.938 25 N -0.283 5.283 26 C 0.088 3.912 27 N -0.183 5.183 28 H 0.257 0.743 29 C -0.087 4.087 30 C -0.189 4.189 31 C -0.239 4.239 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.217 0.783 46 H 0.195 0.805 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.847 11.236 -8.769 19.871 hybrid contribution 0.561 0.249 0.255 0.664 sum -13.286 11.485 -8.514 19.517 Atomic orbital electron populations 1.21733 0.95031 1.01642 1.01066 1.21189 0.95735 0.99052 0.94227 0.91535 1.22021 0.97375 1.00937 0.96364 1.21445 0.91788 0.97823 0.89453 1.48109 1.47330 1.39042 1.02908 1.18225 0.77186 0.77364 0.90623 1.90595 1.62577 1.57831 1.34141 1.20971 1.21521 1.23628 0.92002 0.91041 1.25706 0.95638 0.95013 0.96771 1.70019 1.22191 1.21396 1.26066 0.86434 0.78436 0.79532 0.82717 1.19770 1.20559 1.18953 1.21799 0.91785 0.97412 0.91770 1.22198 0.95206 0.98798 0.86176 0.88307 1.58964 1.53980 1.03691 1.01241 1.22672 0.98907 0.87283 1.03811 1.19689 0.85881 0.89704 0.88268 1.68757 1.17040 1.08072 1.33509 1.24633 0.91055 0.97562 0.80589 1.67460 1.18187 1.14844 1.27762 1.18305 0.95191 0.91023 0.86674 1.41463 1.50375 1.18271 1.08175 0.74313 1.21864 1.01695 0.88862 0.96300 1.21569 1.05370 0.98695 0.93216 1.19954 1.10440 1.00255 0.93288 0.93118 0.93467 0.92092 0.91543 0.91628 0.88882 0.94284 0.92225 0.87720 0.94951 0.90166 0.89691 0.93473 0.78258 0.80497 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.02 37.16 0.34 -1.34 16 2 C -0.08 -1.17 1.98 -90.58 -0.18 -1.35 16 3 H 0.07 0.88 6.53 -51.93 -0.34 0.54 16 4 C -0.13 -1.95 5.36 -26.61 -0.14 -2.09 16 5 C 0.12 2.22 6.31 -3.71 -0.02 2.20 16 6 N -0.64 -14.67 2.97 -174.43 -0.52 -15.19 16 7 C 0.56 16.10 7.62 -12.99 -0.10 16.00 16 8 O -0.57 -18.54 14.46 5.20 0.08 -18.46 16 9 C -0.54 -15.30 8.86 -35.63 -0.32 -15.62 16 10 H 0.07 1.83 5.69 -52.49 -0.30 1.53 16 11 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 12 N -0.77 -23.10 11.84 55.55 0.66 -22.45 16 13 Si 0.90 20.19 29.56 -169.99 -5.02 15.17 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 C 0.10 2.01 5.00 -3.71 -0.02 1.99 16 18 C 0.08 1.42 1.44 -67.59 -0.10 1.32 16 19 H 0.10 1.98 7.55 -51.93 -0.39 1.59 16 20 N -0.46 -6.81 3.93 -172.97 -0.68 -7.49 16 21 C 0.02 0.23 8.41 60.07 0.51 0.74 16 22 C 0.41 6.77 6.08 -154.73 -0.94 5.83 16 23 N -0.55 -10.40 6.99 -13.67 -0.10 -10.50 16 24 C 0.35 6.16 12.23 -92.12 -1.13 5.03 16 25 N -0.56 -9.17 10.47 -13.89 -0.15 -9.31 16 26 C 0.33 4.78 8.48 -155.85 -1.32 3.46 16 27 N -0.58 -5.79 6.03 -12.14 -0.07 -5.87 16 28 H 0.42 3.04 8.96 -40.82 -0.37 2.68 16 29 C 0.04 0.30 11.83 -16.58 -0.20 0.11 16 30 C -0.16 -1.68 9.79 -37.79 -0.37 -2.05 16 31 C -0.23 -3.29 5.90 -105.00 -0.62 -3.91 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.72 7.57 -51.93 -0.39 0.33 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.82 5.37 -51.93 -0.28 1.55 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 40 H 0.10 2.53 5.10 -51.93 -0.26 2.26 16 41 H 0.03 0.63 6.12 -51.93 -0.32 0.31 16 42 H 0.08 0.80 5.24 -51.93 -0.27 0.53 16 43 H 0.08 0.89 6.32 -51.93 -0.33 0.56 16 44 H 0.05 0.64 6.34 -51.93 -0.33 0.31 16 45 H 0.20 3.20 8.06 -52.48 -0.42 2.77 16 46 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.15 1.24 6.94 -52.49 -0.36 0.88 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -36.77 364.24 -11.06 -47.83 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.04 Total: 8.08 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: -4.70 Total: 12.70 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -0.86 Total: -70.80 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.08 Total: -18.46 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.77 -11.06 -47.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013974878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.373 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds