Wall clock time and date at job start Tue Mar 31 2020 07:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.45614 * 2 1 4 4 C 1.53037 * 109.44975 * 240.03603 * 2 1 3 5 5 C 1.53191 * 109.31366 * 178.62046 * 4 2 1 6 6 N 1.46920 * 108.77630 * 54.63430 * 5 4 2 7 7 C 1.34775 * 120.62933 * 126.41360 * 6 5 4 8 8 O 1.21693 * 119.99872 * 174.73893 * 7 6 5 9 9 C 1.46372 * 120.00201 * 354.73921 * 7 6 5 10 10 H 1.07996 * 120.00070 * 5.65577 * 9 7 6 11 11 C 1.40047 * 119.99971 * 185.65848 * 9 7 6 12 12 N 1.30674 * 120.00229 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00149 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46903 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47338 * 119.99975 * 13 11 9 16 16 H 1.48504 * 109.47273 * 240.00059 * 13 11 9 17 17 C 1.46994 * 118.75604 * 306.39408 * 6 5 4 18 18 C 1.53043 * 109.46126 * 119.97124 * 2 1 3 19 19 H 1.09005 * 109.49127 * 61.42333 * 18 2 1 20 20 N 1.46895 * 109.49982 * 301.35907 * 18 2 1 21 21 C 1.46902 * 110.99995 * 299.01651 * 20 18 2 22 22 C 1.38322 * 110.99882 * 175.06348 * 20 18 2 23 23 N 1.32987 * 120.84234 * 359.97438 * 22 20 18 24 24 C 1.32071 * 121.03714 * 180.02562 * 23 22 20 25 25 N 1.31556 * 122.71540 * 0.02562 * 24 23 22 26 26 C 1.33201 * 120.70769 * 359.97438 * 25 24 23 27 27 N 1.36779 * 134.29506 * 180.02562 * 26 25 24 28 28 H 0.96998 * 124.99025 * 359.95510 * 27 26 25 29 29 C 1.37106 * 110.01970 * 179.25377 * 27 26 25 30 30 C 1.34306 * 109.80750 * 0.65611 * 29 27 26 31 31 C 1.40310 * 120.83534 * 179.71928 * 22 20 18 32 32 H 1.09001 * 109.47161 * 300.02237 * 1 2 3 33 33 H 1.08990 * 109.47253 * 60.02843 * 1 2 3 34 34 H 1.09007 * 109.46783 * 180.02562 * 1 2 3 35 35 H 1.09006 * 109.49789 * 298.57187 * 4 2 1 36 36 H 1.09002 * 109.49694 * 58.66594 * 4 2 1 37 37 H 1.08997 * 109.58568 * 174.42248 * 5 4 2 38 38 H 1.08995 * 109.58466 * 294.69871 * 5 4 2 39 39 H 0.97001 * 119.99916 * 179.97438 * 12 11 9 40 40 H 1.09000 * 109.58088 * 293.83051 * 17 6 5 41 41 H 1.09003 * 109.63199 * 173.38040 * 17 6 5 42 42 H 1.09005 * 109.46739 * 60.00197 * 21 20 18 43 43 H 1.08999 * 109.47501 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.46844 * 300.00328 * 21 20 18 45 45 H 1.08002 * 118.64817 * 180.02562 * 24 23 22 46 46 H 1.07997 * 125.09712 * 180.12214 * 29 27 26 47 47 H 1.07999 * 126.59535 * 179.42409 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7207 -1.2502 5 6 3.5711 -0.6888 -1.2645 6 7 4.0677 -1.2492 -0.0004 7 6 4.9617 -2.2578 -0.0006 8 8 5.4376 -2.6492 1.0488 9 6 5.3602 -2.8823 -1.2630 10 1 5.0094 -2.4769 -2.2005 11 6 6.1965 -4.0056 -1.2552 12 7 6.6215 -4.4959 -0.1209 13 14 6.7046 -4.8031 -2.8661 14 1 6.0932 -4.0631 -3.9992 15 1 8.1838 -4.7671 -2.9915 16 1 6.2401 -6.2135 -2.8885 17 6 3.5714 -0.6890 1.2648 18 6 2.0399 -0.7209 1.2500 19 1 1.6977 -1.7557 1.2382 20 7 1.5239 -0.0475 2.4492 21 6 1.9867 1.3454 2.5111 22 6 1.8750 -0.7378 3.5952 23 7 2.5886 -1.8578 3.5247 24 6 2.9256 -2.5204 4.6164 25 7 2.5834 -2.1235 5.8231 26 6 1.8682 -1.0133 5.9967 27 7 1.3718 -0.3580 7.0899 28 1 1.4840 -0.6458 8.0093 29 6 0.7054 0.7737 6.6962 30 6 0.7364 0.8776 5.3575 31 6 1.4919 -0.2713 4.8618 32 1 -0.3633 0.5142 0.8898 33 1 -0.3633 0.5133 -0.8901 34 1 -0.3633 -1.0277 0.0005 35 1 1.6974 -1.7556 -1.2384 36 1 1.6569 -0.2206 -2.1398 37 1 3.9412 -1.2848 -2.0988 38 1 3.9142 0.3403 -1.3702 39 1 7.2005 -5.2742 -0.1155 40 1 3.9144 0.3405 1.3679 41 1 3.9413 -1.2849 2.0992 42 1 1.6371 1.8838 1.6301 43 1 1.5898 1.8207 3.4081 44 1 3.0761 1.3653 2.5405 45 1 3.5062 -3.4254 4.5144 46 1 0.2204 1.4720 7.3620 47 1 0.2888 1.6594 4.7618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013974879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:22 Heat of formation + Delta-G solvation = 80.731077 kcal Electronic energy + Delta-G solvation = -31327.698333 eV Core-core repulsion = 27319.268023 eV Total energy + Delta-G solvation = -4008.430310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.91282 -39.87772 -38.31722 -37.01824 -35.39679 -32.91372 -32.44667 -32.02068 -31.27223 -29.58266 -28.93061 -27.66832 -26.61905 -25.65325 -23.54640 -23.20327 -22.51075 -21.77396 -20.76411 -19.84558 -18.74939 -18.66785 -17.34014 -16.46048 -16.18780 -15.61441 -15.53733 -15.21758 -14.76114 -14.44723 -14.30601 -14.18641 -14.05659 -13.64774 -13.60661 -13.30559 -13.15998 -12.90043 -12.55443 -12.48510 -12.26373 -11.93383 -11.74700 -11.67725 -11.35879 -11.15268 -10.96193 -10.87431 -10.64988 -10.57010 -10.48761 -10.29733 -10.13758 -9.89233 -9.70874 -9.07814 -8.97047 -8.81285 -8.78709 -7.85612 -7.45366 -7.04286 -6.12509 -4.56480 0.95258 1.52490 2.53421 2.65300 3.16282 3.24467 3.28194 3.54537 4.10404 4.14225 4.42473 4.53986 4.62517 4.65986 4.70961 4.92950 4.97229 5.11126 5.16633 5.33291 5.34341 5.43015 5.48683 5.56284 5.69666 5.75208 5.79260 5.87721 5.94054 5.95624 6.02649 6.12405 6.22953 6.23697 6.32566 6.36975 6.47433 6.56648 6.60183 6.70926 6.73413 6.83359 6.93169 7.06834 7.24463 7.52365 7.53190 7.76315 8.22542 8.44224 8.50611 9.09503 9.54830 10.66371 10.85959 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.003640 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.806175 B = 7689.657416 C = 9218.199456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.127 4.127 5 C 0.118 3.882 6 N -0.635 5.635 7 C 0.562 3.438 8 O -0.571 6.571 9 C -0.544 4.544 10 H 0.072 0.928 11 C 0.088 3.912 12 N -0.767 5.767 13 Si 0.903 3.097 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.095 3.905 18 C 0.085 3.915 19 H 0.097 0.903 20 N -0.463 5.463 21 C 0.017 3.983 22 C 0.410 3.590 23 N -0.551 5.551 24 C 0.352 3.648 25 N -0.559 5.559 26 C 0.328 3.672 27 N -0.575 5.575 28 H 0.419 0.581 29 C 0.038 3.962 30 C -0.162 4.162 31 C -0.228 4.228 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.038 0.962 39 H 0.266 0.734 40 H 0.029 0.971 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.202 0.798 46 H 0.178 0.822 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 12.717 8.098 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.374 5.374 7 C 0.367 3.633 8 O -0.453 6.453 9 C -0.581 4.581 10 H 0.090 0.910 11 C -0.131 4.131 12 N -0.396 5.396 13 Si 0.728 3.272 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.031 4.031 18 C -0.023 4.023 19 H 0.115 0.885 20 N -0.178 5.178 21 C -0.129 4.129 22 C 0.164 3.836 23 N -0.273 5.273 24 C 0.062 3.938 25 N -0.282 5.282 26 C 0.088 3.912 27 N -0.183 5.183 28 H 0.257 0.743 29 C -0.087 4.087 30 C -0.189 4.189 31 C -0.240 4.240 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.218 0.782 46 H 0.195 0.805 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.482 11.564 8.794 19.820 hybrid contribution 0.408 0.171 -0.293 0.531 sum -13.074 11.736 8.501 19.517 Atomic orbital electron populations 1.21744 0.95017 1.01723 1.01047 1.21217 0.95738 0.99074 0.94324 0.91517 1.22006 0.97366 1.00989 0.96266 1.21451 0.91945 0.97662 0.89588 1.48120 1.47308 1.39026 1.02914 1.18218 0.77274 0.77215 0.90600 1.90590 1.56618 1.63870 1.34186 1.21000 1.31629 1.13458 0.92013 0.90997 1.25704 0.94356 0.96305 0.96750 1.70030 1.25137 1.18479 1.25991 0.86385 0.78674 0.79317 0.82787 1.18805 1.20271 1.20240 1.21931 0.91726 0.97526 0.91911 1.22181 0.95294 0.98683 0.86100 0.88504 1.58990 1.54130 1.03665 1.01034 1.22711 0.99841 0.86357 1.03979 1.19702 0.85688 0.89693 0.88518 1.68779 1.15325 1.09923 1.33270 1.24661 0.91843 0.96832 0.80479 1.67465 1.17993 1.14720 1.28040 1.18308 0.94822 0.91452 0.86594 1.41468 1.47736 1.21426 1.07661 0.74313 1.21864 1.00448 0.90252 0.96138 1.21565 1.04884 0.99303 0.93145 1.19950 1.09585 1.01315 0.93120 0.92131 0.93443 0.93029 0.91433 0.91687 0.88800 0.94406 0.92294 0.95254 0.86866 0.89664 0.90100 0.93429 0.78201 0.80500 0.82985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.02 37.16 0.34 -1.34 16 2 C -0.08 -1.19 1.84 -90.58 -0.17 -1.36 16 3 H 0.07 0.88 6.50 -51.93 -0.34 0.54 16 4 C -0.13 -1.95 5.36 -26.61 -0.14 -2.09 16 5 C 0.12 2.20 6.35 -3.71 -0.02 2.18 16 6 N -0.64 -14.71 2.97 -174.38 -0.52 -15.23 16 7 C 0.56 16.14 7.61 -12.99 -0.10 16.04 16 8 O -0.57 -18.58 14.48 5.19 0.08 -18.50 16 9 C -0.54 -15.29 8.88 -35.63 -0.32 -15.61 16 10 H 0.07 1.84 5.64 -52.49 -0.30 1.55 16 11 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 12 N -0.77 -23.06 11.84 55.55 0.66 -22.40 16 13 Si 0.90 20.20 29.56 -169.99 -5.02 15.17 16 14 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 C 0.09 1.95 5.03 -3.67 -0.02 1.94 16 18 C 0.09 1.44 1.46 -67.60 -0.10 1.34 16 19 H 0.10 1.94 7.77 -51.93 -0.40 1.54 16 20 N -0.46 -6.82 3.97 -172.97 -0.69 -7.50 16 21 C 0.02 0.20 8.58 60.07 0.52 0.72 16 22 C 0.41 6.79 6.06 -154.73 -0.94 5.85 16 23 N -0.55 -10.46 6.70 -13.67 -0.09 -10.55 16 24 C 0.35 6.23 12.23 -92.12 -1.13 5.10 16 25 N -0.56 -9.23 10.47 -13.89 -0.15 -9.37 16 26 C 0.33 4.80 8.48 -155.85 -1.32 3.48 16 27 N -0.58 -5.81 6.03 -12.13 -0.07 -5.89 16 28 H 0.42 3.06 8.96 -40.82 -0.37 2.69 16 29 C 0.04 0.31 11.83 -16.58 -0.20 0.11 16 30 C -0.16 -1.69 9.72 -37.79 -0.37 -2.05 16 31 C -0.23 -3.30 5.89 -105.00 -0.62 -3.92 16 32 H 0.06 0.71 7.57 -51.93 -0.39 0.32 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.85 5.30 -51.93 -0.28 1.57 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 40 H 0.03 0.58 6.13 -51.93 -0.32 0.26 16 41 H 0.11 2.73 4.70 -51.93 -0.24 2.48 16 42 H 0.08 0.87 6.36 -51.93 -0.33 0.54 16 43 H 0.08 0.81 5.10 -51.93 -0.26 0.55 16 44 H 0.05 0.64 6.17 -51.93 -0.32 0.32 16 45 H 0.20 3.28 8.06 -52.49 -0.42 2.86 16 46 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.15 1.24 6.99 -52.49 -0.37 0.87 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -36.73 363.50 -11.02 -47.75 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.01 Total: 8.28 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -4.68 Total: 12.76 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -0.86 Total: -70.94 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.08 Total: -18.50 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.73 -11.02 -47.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013974879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.480 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds