Wall clock time and date at job start Tue Mar 31 2020 07:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46157 * 2 1 4 4 C 1.53040 * 109.44294 * 119.96779 * 2 1 3 5 5 C 1.53189 * 109.31922 * 58.64602 * 4 2 1 6 6 N 1.46935 * 108.77081 * 54.63287 * 5 4 2 7 7 C 1.34777 * 120.62492 * 126.41635 * 6 5 4 8 8 O 1.21691 * 119.99413 * 174.64275 * 7 6 5 9 9 C 1.46370 * 120.00224 * 354.64116 * 7 6 5 10 10 H 1.07991 * 120.00429 * 335.19803 * 9 7 6 11 11 C 1.40057 * 119.99874 * 155.19750 * 9 7 6 12 12 N 1.30669 * 120.00029 * 184.37852 * 11 9 7 13 13 Si 1.86803 * 120.00023 * 4.37068 * 11 9 7 14 14 H 1.48498 * 109.46744 * 84.44286 * 13 11 9 15 15 H 1.48500 * 109.47360 * 204.44368 * 13 11 9 16 16 H 1.48502 * 109.47158 * 324.44742 * 13 11 9 17 17 C 1.46917 * 118.73870 * 306.39242 * 6 5 4 18 18 C 1.53039 * 109.46125 * 240.02458 * 2 1 3 19 19 H 1.08999 * 109.49700 * 181.37953 * 18 2 1 20 20 N 1.46894 * 109.49861 * 61.31258 * 18 2 1 21 21 C 1.46902 * 110.99841 * 56.04306 * 20 18 2 22 22 C 1.38325 * 111.00282 * 179.97438 * 20 18 2 23 23 N 1.32997 * 120.83691 * 359.97438 * 22 20 18 24 24 C 1.32072 * 121.02984 * 179.97438 * 23 22 20 25 25 N 1.31546 * 122.71789 * 359.97438 * 24 23 22 26 26 C 1.33197 * 120.71231 * 359.97438 * 25 24 23 27 27 N 1.36786 * 134.29669 * 179.97438 * 26 25 24 28 28 H 0.96998 * 124.99087 * 359.97438 * 27 26 25 29 29 C 1.37101 * 110.01859 * 180.02562 * 27 26 25 30 30 C 1.34302 * 109.81321 * 0.02562 * 29 27 26 31 31 C 1.40302 * 120.84099 * 179.97438 * 22 20 18 32 32 H 1.08998 * 109.46911 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47418 * 299.97713 * 1 2 3 34 34 H 1.09004 * 109.46523 * 59.97183 * 1 2 3 35 35 H 1.09005 * 109.49788 * 178.60512 * 4 2 1 36 36 H 1.09008 * 109.49914 * 298.69392 * 4 2 1 37 37 H 1.09000 * 109.59198 * 174.41715 * 5 4 2 38 38 H 1.09001 * 109.58893 * 294.85043 * 5 4 2 39 39 H 0.97005 * 119.99663 * 179.97438 * 12 11 9 40 40 H 1.08999 * 109.58887 * 293.81660 * 17 6 5 41 41 H 1.09000 * 109.58622 * 173.39597 * 17 6 5 42 42 H 1.09004 * 109.47247 * 183.94960 * 21 20 18 43 43 H 1.08995 * 109.47633 * 303.95495 * 21 20 18 44 44 H 1.09005 * 109.46876 * 63.95729 * 21 20 18 45 45 H 1.08001 * 118.63915 * 179.97438 * 24 23 22 46 46 H 1.08006 * 125.09143 * 180.02562 * 29 27 26 47 47 H 1.07997 * 126.59352 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2644 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0004 8 8 2.7237 -4.5680 -1.0488 9 6 2.9723 -4.5710 1.2626 10 1 3.1613 -3.9345 2.1143 11 6 3.1651 -5.9544 1.3659 12 7 3.4907 -6.4848 2.5149 13 14 2.9567 -7.0414 -0.1390 14 1 4.2205 -7.0551 -0.9185 15 1 2.6252 -8.4236 0.2908 16 1 1.8587 -6.5094 -0.9856 17 6 1.4993 -2.1543 -1.2641 18 6 2.0399 -0.7209 -1.2499 19 1 3.1296 -0.7428 -1.2383 20 7 1.5766 -0.0103 -2.4492 21 6 1.9951 1.3975 -2.4214 22 6 2.0213 -0.6367 -3.5995 23 7 2.7677 -1.7354 -3.5324 24 6 3.1940 -2.3368 -4.6282 25 7 2.9131 -1.8971 -5.8358 26 6 2.1710 -0.8042 -6.0062 27 7 1.7200 -0.1167 -7.0993 28 1 1.8998 -0.3581 -8.0214 29 6 0.9774 0.9645 -6.7002 30 6 0.9253 1.0109 -5.3590 31 6 1.6964 -0.1291 -4.8664 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5134 0.8901 34 1 -0.3632 0.5143 -0.8898 35 1 3.1292 -0.7431 1.2387 36 1 1.6954 -0.1934 2.1399 37 1 1.9373 -2.7018 2.0987 38 1 0.4139 -2.1345 1.3673 39 1 3.6238 -7.4430 2.5864 40 1 0.4144 -2.1347 -1.3674 41 1 1.9379 -2.7020 -2.0982 42 1 1.5801 1.9171 -3.2852 43 1 1.6327 1.8665 -1.5067 44 1 3.0833 1.4537 -2.4521 45 1 3.7982 -3.2265 -4.5288 46 1 0.5050 1.6728 -7.3648 47 1 0.4136 1.7494 -4.7597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013974880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:27 Heat of formation + Delta-G solvation = 77.524538 kcal Electronic energy + Delta-G solvation = -31472.505618 eV Core-core repulsion = 27463.936262 eV Total energy + Delta-G solvation = -4008.569356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.00788 -40.01958 -38.52157 -37.39926 -35.83827 -32.96660 -32.70951 -31.95929 -31.42515 -29.83847 -29.23970 -27.56501 -26.59926 -25.79290 -23.67028 -23.45669 -23.32477 -21.88095 -20.80654 -19.72414 -18.87603 -18.07262 -17.31981 -16.57967 -16.29785 -16.09471 -15.68035 -15.33763 -15.01052 -14.80595 -14.36773 -14.30398 -14.11169 -13.84338 -13.65113 -13.43033 -13.29509 -13.25272 -12.96214 -12.54575 -12.28772 -12.15622 -11.94003 -11.53950 -11.38900 -11.31998 -11.14795 -10.85576 -10.81703 -10.62163 -10.57837 -10.35837 -10.00484 -9.93097 -9.33161 -9.19416 -9.01093 -8.90786 -8.84388 -7.91489 -7.77074 -7.31048 -6.49974 -4.68736 0.85182 1.41353 2.45029 2.56761 3.35989 3.54417 3.56289 3.84474 3.96323 4.28960 4.32579 4.38536 4.48647 4.58088 4.65916 4.82654 4.88507 5.02174 5.05416 5.21994 5.25006 5.27251 5.39596 5.45919 5.53612 5.65131 5.66191 5.75783 5.81032 5.84795 5.97807 6.06299 6.13258 6.16741 6.25383 6.27904 6.44458 6.46136 6.50824 6.62089 6.67570 6.75584 6.84290 7.00520 7.09190 7.33387 7.43529 7.81636 8.01912 8.38505 8.44729 8.85844 9.27815 10.17292 10.52032 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.004062 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.955934 B = 6891.381513 C = 8654.489300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.065 0.935 4 C -0.128 4.128 5 C 0.116 3.884 6 N -0.625 5.625 7 C 0.561 3.439 8 O -0.605 6.605 9 C -0.534 4.534 10 H 0.089 0.911 11 C 0.101 3.899 12 N -0.839 5.839 13 Si 0.952 3.048 14 H -0.278 1.278 15 H -0.323 1.323 16 H -0.252 1.252 17 C 0.117 3.883 18 C 0.085 3.915 19 H 0.064 0.936 20 N -0.465 5.465 21 C 0.024 3.976 22 C 0.410 3.590 23 N -0.554 5.554 24 C 0.351 3.649 25 N -0.558 5.558 26 C 0.328 3.672 27 N -0.575 5.575 28 H 0.420 0.580 29 C 0.039 3.961 30 C -0.162 4.162 31 C -0.226 4.226 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.279 0.721 40 H 0.043 0.957 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.201 0.799 46 H 0.179 0.821 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.929 19.730 -12.938 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.084 0.916 4 C -0.167 4.167 5 C -0.008 4.008 6 N -0.359 5.359 7 C 0.368 3.632 8 O -0.495 6.495 9 C -0.571 4.571 10 H 0.107 0.893 11 C -0.115 4.115 12 N -0.470 5.470 13 Si 0.784 3.216 14 H -0.204 1.204 15 H -0.254 1.254 16 H -0.177 1.177 17 C -0.008 4.008 18 C -0.023 4.023 19 H 0.082 0.918 20 N -0.182 5.182 21 C -0.122 4.122 22 C 0.164 3.836 23 N -0.276 5.276 24 C 0.060 3.940 25 N -0.281 5.281 26 C 0.088 3.912 27 N -0.182 5.182 28 H 0.258 0.742 29 C -0.086 4.086 30 C -0.189 4.189 31 C -0.238 4.238 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.057 0.943 45 H 0.218 0.782 46 H 0.196 0.804 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.750 18.546 -13.364 23.571 hybrid contribution 0.211 0.212 -0.931 0.978 sum -5.539 18.757 -14.295 24.225 Atomic orbital electron populations 1.21847 0.94640 1.02619 1.00993 1.21252 0.96801 0.98351 0.94214 0.91632 1.21973 1.01226 0.97044 0.96493 1.21534 0.98492 0.91720 0.89045 1.47739 1.61142 1.23028 1.04032 1.18361 0.76346 0.78367 0.90129 1.90293 1.63625 1.60357 1.35203 1.20711 1.45888 0.93330 0.97127 0.89296 1.25683 0.89844 0.98619 0.97404 1.69547 1.38139 1.13687 1.25612 0.85539 0.81415 0.73913 0.80701 1.20449 1.25407 1.17711 1.21636 0.97973 0.90571 0.90589 1.22121 0.98781 0.95094 0.86260 0.91825 1.58715 1.54490 1.03883 1.01067 1.22634 0.99368 0.85833 1.04348 1.19657 0.85748 0.89305 0.88880 1.68708 1.14689 1.11179 1.33002 1.24642 0.92302 0.96608 0.80442 1.67448 1.19135 1.13384 1.28093 1.18302 0.94876 0.91421 0.86567 1.41478 1.45654 1.23625 1.07463 0.74249 1.21883 0.98916 0.91689 0.96067 1.21569 1.04640 0.99513 0.93156 1.19936 1.08825 1.02080 0.92975 0.91867 0.93313 0.92289 0.91674 0.91283 0.88321 0.93282 0.91068 0.93841 0.86031 0.89939 0.89367 0.94321 0.78219 0.80424 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.29 37.16 0.31 -1.48 16 2 C -0.09 -1.16 2.27 -90.58 -0.21 -1.37 16 3 H 0.07 0.74 6.19 -51.93 -0.32 0.42 16 4 C -0.13 -1.89 5.62 -26.61 -0.15 -2.04 16 5 C 0.12 2.14 5.88 -3.71 -0.02 2.12 16 6 N -0.63 -13.90 2.97 -174.43 -0.52 -14.42 16 7 C 0.56 15.18 7.22 -12.99 -0.09 15.08 16 8 O -0.60 -17.72 11.71 5.20 0.06 -17.66 16 9 C -0.53 -15.19 9.06 -35.63 -0.32 -15.51 16 10 H 0.09 2.52 6.47 -52.49 -0.34 2.18 16 11 C 0.10 2.91 5.52 -17.36 -0.10 2.82 16 12 N -0.84 -24.25 13.92 55.55 0.77 -23.48 16 13 Si 0.95 25.65 26.20 -169.99 -4.45 21.20 16 14 H -0.28 -7.61 7.11 56.52 0.40 -7.21 16 15 H -0.32 -8.31 7.11 56.52 0.40 -7.91 16 16 H -0.25 -7.17 6.21 56.52 0.35 -6.82 16 17 C 0.12 2.33 4.91 -3.71 -0.02 2.31 16 18 C 0.08 1.36 1.38 -67.59 -0.09 1.27 16 19 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 20 N -0.47 -6.43 3.97 -172.97 -0.69 -7.12 16 21 C 0.02 0.25 8.92 60.07 0.54 0.78 16 22 C 0.41 6.38 6.03 -154.72 -0.93 5.45 16 23 N -0.55 -9.85 6.42 -13.67 -0.09 -9.93 16 24 C 0.35 5.80 12.23 -92.13 -1.13 4.67 16 25 N -0.56 -8.68 10.47 -13.90 -0.15 -8.83 16 26 C 0.33 4.53 8.48 -155.85 -1.32 3.21 16 27 N -0.57 -5.40 6.03 -12.13 -0.07 -5.47 16 28 H 0.42 2.79 8.96 -40.82 -0.37 2.42 16 29 C 0.04 0.29 11.83 -16.58 -0.20 0.10 16 30 C -0.16 -1.56 9.79 -37.79 -0.37 -1.93 16 31 C -0.23 -3.09 5.90 -105.00 -0.62 -3.71 16 32 H 0.06 0.92 4.98 -51.93 -0.26 0.66 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.69 7.64 -51.93 -0.40 0.30 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.10 2.00 5.52 -51.93 -0.29 1.71 16 38 H 0.05 0.84 6.69 -51.93 -0.35 0.49 16 39 H 0.28 7.48 8.29 -40.82 -0.34 7.15 16 40 H 0.04 0.86 6.69 -51.93 -0.35 0.51 16 41 H 0.12 2.76 4.27 -51.93 -0.22 2.54 16 42 H 0.08 0.71 5.24 -51.93 -0.27 0.43 16 43 H 0.09 0.77 5.98 -51.93 -0.31 0.46 16 44 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.20 3.01 8.06 -52.49 -0.42 2.59 16 46 H 0.18 0.56 8.06 -52.48 -0.42 0.13 16 47 H 0.15 1.14 6.94 -52.49 -0.36 0.77 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -35.41 355.98 -10.46 -45.87 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.97 Total: 2.71 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: -4.73 Total: 11.76 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -0.74 Total: -69.24 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.06 Total: -17.66 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -4.45 Total: 21.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.41 -10.46 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013974880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.393 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds