Wall clock time and date at job start Tue Mar 31 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00256 * 2 1 4 4 H 1.48501 * 109.46909 * 269.99771 * 3 2 1 5 5 H 1.48504 * 109.47282 * 29.99278 * 3 2 1 6 6 H 1.48497 * 109.47737 * 149.99636 * 3 2 1 7 7 C 1.37881 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99959 * 0.02562 * 7 2 1 10 10 S 1.81001 * 109.47228 * 179.97438 * 9 7 2 11 11 C 1.76202 * 100.00033 * 179.97438 * 10 9 7 12 12 N 1.31446 * 126.38276 * 359.97438 * 11 10 9 13 13 N 1.28509 * 110.08225 * 179.97438 * 12 11 10 14 14 C 1.31268 * 109.95636 * 359.97438 * 13 12 11 15 15 C 1.47847 * 126.46539 * 179.97438 * 14 13 12 16 16 C 1.40000 * 120.56329 * 160.86564 * 15 14 13 17 17 C 1.38351 * 118.28914 * 180.02562 * 16 15 14 18 18 C 1.38347 * 119.31301 * 0.02562 * 17 16 15 19 19 N 1.31912 * 121.07861 * 359.97438 * 18 17 16 20 20 C 1.31708 * 121.87600 * 0.02562 * 19 18 17 21 21 N 1.36570 * 126.38661 * 180.26162 * 11 10 9 22 22 C 1.46501 * 127.16465 * 0.02562 * 21 11 10 23 23 C 1.50704 * 109.47098 * 276.05020 * 22 21 11 24 24 C 1.34515 * 125.78202 * 89.72237 * 23 22 21 25 25 C 1.41382 * 106.84074 * 179.89114 * 24 23 22 26 26 C 1.34513 * 106.83799 * 0.36937 * 25 24 23 27 27 O 1.34295 * 125.79512 * 270.03355 * 23 22 21 28 28 H 0.96998 * 119.99815 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46875 * 59.99542 * 9 7 2 30 30 H 1.08997 * 109.47311 * 299.99947 * 9 7 2 31 31 H 1.07997 * 120.85396 * 359.74569 * 16 15 14 32 32 H 1.08005 * 120.34487 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.46539 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.72018 * 180.02562 * 20 19 18 35 35 H 1.08994 * 109.47655 * 36.06046 * 22 21 11 36 36 H 1.09010 * 109.46503 * 156.05973 * 22 21 11 37 37 H 1.07999 * 126.58045 * 0.02641 * 24 23 22 38 38 H 1.08004 * 126.58334 * 180.12551 * 25 24 23 39 39 H 1.08008 * 125.79039 * 179.79256 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 16 2.4273 -3.8749 0.0005 11 6 1.3071 -5.2351 0.0013 12 7 -0.0054 -5.1642 0.0022 13 7 -0.5111 -6.3457 0.0020 14 6 0.4470 -7.2430 0.0004 15 6 0.2754 -8.7115 0.0003 16 6 1.3235 -9.5506 -0.3966 17 6 1.1115 -10.9177 -0.3792 18 6 -0.1176 -11.4073 0.0253 19 7 -1.0874 -10.5927 0.3940 20 6 -0.9342 -9.2845 0.3946 21 7 1.6408 -6.5594 0.0066 22 6 2.9891 -7.1323 0.0132 23 6 3.5151 -7.1953 -1.3976 24 6 4.2091 -6.2270 -2.0222 25 6 4.5017 -6.7050 -3.3202 26 6 3.9618 -7.9335 -3.4140 27 8 3.3655 -8.2252 -2.2464 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.2716 -9.1411 -0.7125 32 1 1.8970 -11.5955 -0.6791 33 1 -0.2860 -12.4740 0.0394 34 1 -1.7516 -8.6499 0.7037 35 1 3.6463 -6.5081 0.6186 36 1 2.9545 -8.1377 0.4333 37 1 4.4909 -5.2692 -1.6104 38 1 5.0496 -6.1823 -4.0903 39 1 4.0014 -8.5764 -4.2809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014093353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:51 Heat of formation + Delta-G solvation = 136.031798 kcal Electronic energy + Delta-G solvation = -26266.168476 eV Core-core repulsion = 22496.648778 eV Total energy + Delta-G solvation = -3769.519698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.089 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.99336 -42.44007 -40.15105 -35.68804 -33.45537 -33.24594 -32.98613 -32.17019 -30.65642 -29.47894 -28.56105 -26.75253 -24.37203 -24.03164 -23.17069 -22.17803 -21.98970 -21.25735 -20.65481 -18.26437 -17.67696 -17.25939 -16.74330 -16.38234 -16.31993 -16.00308 -15.82960 -15.42099 -14.74820 -14.66905 -14.21307 -14.07191 -13.87332 -13.27163 -13.16648 -12.97339 -12.88581 -12.47165 -12.44702 -12.37227 -12.04985 -11.49965 -10.98892 -10.91262 -10.67530 -10.59713 -10.34583 -10.23545 -10.10691 -9.91508 -9.78240 -9.69894 -9.34043 -8.94093 -8.81867 -8.62215 -6.97581 -6.24695 -4.33883 0.46875 0.96088 1.25072 1.69931 1.94329 2.35035 2.63992 2.82489 3.03961 3.21722 3.26554 3.28492 3.37791 3.63697 3.97167 4.15562 4.28282 4.31168 4.33637 4.52191 4.59707 4.71256 4.79771 4.94826 4.95499 5.09087 5.11666 5.35159 5.51236 5.58475 5.65082 5.73167 5.74551 5.88855 5.97146 6.10661 6.28720 6.36602 6.70532 6.84082 7.04406 7.15734 7.61411 7.69140 7.86482 8.66524 8.84199 9.30116 10.85501 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.003294 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.401789 B = 8497.748431 C =10146.684006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.078 3.922 10 S -0.047 6.047 11 C 0.194 3.806 12 N -0.283 5.283 13 N -0.259 5.259 14 C 0.197 3.803 15 C -0.052 4.052 16 C -0.075 4.075 17 C -0.167 4.167 18 C 0.101 3.899 19 N -0.479 5.479 20 C 0.142 3.858 21 N -0.467 5.467 22 C 0.188 3.812 23 C -0.064 4.064 24 C -0.154 4.154 25 C -0.212 4.212 26 C -0.028 4.028 27 O -0.176 6.176 28 H 0.268 0.732 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 -21.842 -3.014 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.569 4.569 8 H 0.085 0.915 9 C -0.069 4.069 10 S 0.183 5.817 11 C -0.178 4.178 12 N -0.127 5.127 13 N -0.099 5.099 14 C -0.069 4.069 15 C -0.057 4.057 16 C -0.103 4.103 17 C -0.187 4.187 18 C -0.056 4.056 19 N -0.187 5.187 20 C -0.018 4.018 21 N -0.163 5.163 22 C 0.065 3.935 23 C -0.114 4.114 24 C -0.175 4.175 25 C -0.232 4.232 26 C -0.096 4.096 27 O -0.072 6.072 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.078 -21.658 -2.640 23.265 hybrid contribution 1.311 0.881 -0.630 1.701 sum 9.389 -20.776 -3.270 23.033 Atomic orbital electron populations 1.69978 1.06106 1.27609 1.47869 1.24937 0.94965 0.99171 0.94310 0.86344 0.79672 0.82163 0.78413 1.20256 1.20811 1.19518 1.20550 0.93225 0.88498 1.54597 0.91454 1.21389 0.93745 0.89028 1.02718 1.85365 1.11427 0.94378 1.90521 1.27569 0.97861 0.88333 1.04044 1.74919 1.03250 1.14008 1.20535 1.74296 1.24753 0.95074 1.15823 1.22543 0.81944 0.93626 1.08784 1.18519 0.96671 0.87261 1.03238 1.22033 0.98927 0.93766 0.95536 1.22032 0.99342 0.95345 1.01941 1.22936 0.88883 1.00175 0.93616 1.67796 1.32462 1.04214 1.14192 1.22997 0.95232 0.90778 0.92760 1.46544 1.06810 1.05466 1.57469 1.20291 0.81103 1.02223 0.89888 1.22176 1.06257 0.89129 0.93841 1.21923 1.00723 1.00181 0.94630 1.21932 1.06231 0.96424 0.98573 1.24128 0.98761 0.98560 0.88141 1.83942 1.61453 1.40076 1.21759 0.92186 0.92785 0.92715 0.83935 0.84244 0.82369 0.81299 0.85066 0.86752 0.82211 0.82926 0.77847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.36 13.29 55.43 0.74 -24.63 16 2 C 0.07 1.96 5.46 -17.82 -0.10 1.87 16 3 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.53 -14.16 9.13 -34.44 -0.31 -14.47 16 8 H 0.07 1.73 7.71 -52.48 -0.40 1.33 16 9 C 0.08 2.01 4.99 36.00 0.18 2.18 16 10 S -0.05 -0.94 21.71 -107.50 -2.33 -3.28 16 11 C 0.19 3.86 8.07 -88.17 -0.71 3.15 16 12 N -0.28 -6.40 11.59 30.71 0.36 -6.04 16 13 N -0.26 -5.28 12.04 32.59 0.39 -4.89 16 14 C 0.20 3.33 7.71 -153.76 -1.19 2.15 16 15 C -0.05 -0.71 5.87 -104.82 -0.62 -1.32 16 16 C -0.08 -0.81 8.72 -38.88 -0.34 -1.15 16 17 C -0.17 -1.41 10.10 -39.50 -0.40 -1.81 16 18 C 0.10 0.93 11.17 -17.48 -0.20 0.73 16 19 N -0.48 -5.79 10.35 -12.91 -0.13 -5.92 16 20 C 0.14 1.86 10.88 -17.12 -0.19 1.68 16 21 N -0.47 -7.54 2.82 -115.36 -0.33 -7.86 16 22 C 0.19 2.19 5.68 -5.19 -0.03 2.16 16 23 C -0.06 -0.77 6.62 -35.62 -0.24 -1.00 16 24 C -0.15 -1.90 10.81 -39.70 -0.43 -2.33 16 25 C -0.21 -2.23 10.91 -39.70 -0.43 -2.66 16 26 C -0.03 -0.26 12.09 29.42 0.36 0.10 16 27 O -0.18 -1.96 8.75 5.72 0.05 -1.91 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.05 1.50 8.14 -51.91 -0.42 1.08 16 30 H 0.05 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.14 1.45 2.89 -52.49 -0.15 1.30 16 32 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.17 2.21 7.99 -52.49 -0.42 1.79 16 35 H 0.13 1.33 8.04 -51.93 -0.42 0.91 16 36 H 0.11 1.04 5.65 -51.92 -0.29 0.75 16 37 H 0.16 2.00 7.90 -52.49 -0.41 1.58 16 38 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.20 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -33.23 356.59 -9.31 -42.54 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -3.77 Total: 1.79 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -4.64 Total: -10.74 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 1.03 Total: -49.34 kcal Atomic # 8 Polarization: -1.96 SS G_CDS: 0.05 Total: -1.91 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.33 Total: -3.28 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.23 -9.31 -42.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014093353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.572 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds