Wall clock time and date at job start Tue Mar 31 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35952 * 117.00371 * 2 1 4 4 C 1.37997 * 120.04800 * 0.23704 * 3 2 1 5 5 C 1.40286 * 119.68863 * 180.18632 * 4 3 2 6 6 C 1.46388 * 120.09528 * 179.81604 * 5 4 3 7 7 C 1.37858 * 119.99508 * 214.13454 * 6 5 4 8 8 C 1.43201 * 120.00059 * 7.29349 * 7 6 5 9 9 N 6.58336 * 110.19883 * 339.58825 * 2 1 3 10 10 C 1.47125 * 119.99904 * 187.29831 * 7 6 5 11 11 O 1.21647 * 119.99873 * 359.97438 * 10 7 6 12 12 N 1.34775 * 119.99782 * 179.72509 * 10 7 6 13 13 C 1.47019 * 125.65012 * 359.95913 * 12 10 7 14 14 C 1.54312 * 107.27724 * 180.97029 * 13 12 10 15 15 C 1.55161 * 102.86241 * 22.53003 * 14 13 12 16 16 C 1.47421 * 125.64592 * 180.27437 * 12 10 7 17 17 C 1.40286 * 119.79879 * 359.53613 * 5 4 3 18 18 C 1.36530 * 120.10538 * 0.27695 * 17 5 4 19 19 C 1.39138 * 120.31205 * 359.95443 * 18 17 5 20 20 O 1.35537 * 119.90439 * 180.02562 * 19 18 17 21 21 C 1.34726 * 116.99928 * 7.22043 * 20 19 18 22 22 H 1.08005 * 120.00024 * 354.83877 * 21 20 19 23 23 C 1.38767 * 120.00308 * 174.84253 * 21 20 19 24 24 N 1.31476 * 119.99835 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 119.99921 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46826 * 90.00262 * 25 23 21 27 27 H 1.48497 * 109.47002 * 210.00035 * 25 23 21 28 28 H 1.48496 * 109.47230 * 330.00285 * 25 23 21 29 29 H 1.09004 * 109.47513 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47227 * 299.99563 * 1 2 3 31 31 H 1.08997 * 109.47708 * 59.99781 * 1 2 3 32 32 H 1.08000 * 120.15679 * 359.97438 * 4 3 2 33 33 H 1.07995 * 120.00481 * 34.13401 * 6 5 4 34 34 H 1.09004 * 109.88629 * 300.51841 * 13 12 10 35 35 H 1.08999 * 109.88325 * 61.68233 * 13 12 10 36 36 H 1.08998 * 110.92617 * 264.11370 * 14 13 12 37 37 H 1.09005 * 110.59491 * 140.78803 * 14 13 12 38 38 H 1.09003 * 111.00137 * 206.22745 * 15 14 13 39 39 H 1.09001 * 111.00347 * 82.37626 * 15 14 13 40 40 H 1.09003 * 110.36952 * 274.66866 * 16 12 10 41 41 H 1.09000 * 110.37082 * 36.88684 * 16 12 10 42 42 H 1.08004 * 119.94412 * 180.25793 * 17 5 4 43 43 H 1.07995 * 119.84803 * 179.97438 * 18 17 5 44 44 H 0.97000 * 120.00071 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2957 2.3693 0.0049 5 6 1.9404 3.6152 0.0009 6 6 1.1530 4.8493 0.0021 7 6 1.6130 5.9609 -0.6711 8 6 2.7779 5.8659 -1.4985 9 7 3.7020 5.7905 -2.1548 10 6 0.9071 7.2450 -0.5393 11 8 -0.0827 7.3257 0.1633 12 7 1.3600 8.3331 -1.1930 13 6 2.5421 8.3780 -2.0660 14 6 2.6845 9.8294 -2.5704 15 6 1.9129 10.6446 -1.4992 16 6 0.7559 9.6771 -1.1458 17 6 3.3420 3.6749 0.0018 18 6 4.0765 2.5239 0.0008 19 6 3.4416 1.2858 -0.0001 20 8 4.1788 0.1484 -0.0005 21 6 5.5108 0.2828 0.1508 22 1 5.9542 1.2672 0.1817 23 6 6.3131 -0.8434 0.2670 24 7 7.6129 -0.7121 0.4152 25 14 5.5463 -2.5459 0.2142 26 1 5.5035 -3.0261 -1.1903 27 1 6.3597 -3.4807 1.0325 28 1 4.1660 -2.4842 0.7585 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2169 2.3167 0.0084 33 1 0.2118 4.8888 0.5301 34 1 3.4300 8.0904 -1.5029 35 1 2.4035 7.7054 -2.9124 36 1 2.2235 9.9477 -3.5510 37 1 3.7334 10.1245 -2.5980 38 1 1.5300 11.5754 -1.9175 39 1 2.5400 10.8381 -0.6289 40 1 -0.0450 9.7591 -1.8807 41 1 0.3755 9.8872 -0.1462 42 1 3.8409 4.6328 0.0030 43 1 5.1552 2.5747 0.0011 44 1 8.1737 -1.4994 0.4968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016438112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:58 Heat of formation + Delta-G solvation = -7.490682 kcal Electronic energy + Delta-G solvation = -28719.681077 eV Core-core repulsion = 24604.725250 eV Total energy + Delta-G solvation = -4114.955827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.37170 -39.95596 -38.00860 -37.70900 -37.26569 -36.01198 -33.21409 -32.62727 -31.87376 -29.99393 -29.54357 -28.93714 -26.92062 -25.83203 -24.48937 -23.27092 -21.93387 -21.51588 -20.89380 -20.33631 -18.49497 -18.20996 -17.56919 -16.88990 -16.54082 -15.89206 -15.65367 -15.46413 -15.09649 -14.78681 -14.60930 -14.13232 -14.01877 -13.93198 -13.84426 -13.60840 -13.51785 -13.42149 -13.03035 -12.74554 -12.60944 -12.51999 -12.42131 -12.18959 -11.90925 -11.70648 -11.55196 -11.40627 -11.17732 -11.07424 -11.01369 -10.91562 -10.82009 -10.38237 -10.07038 -9.75711 -9.46639 -9.05104 -8.79975 -8.23423 -7.22374 -6.71603 -4.28533 0.43017 1.92598 2.08043 2.71440 2.74085 2.92577 3.10649 3.13712 3.30768 3.68614 3.70154 4.04831 4.06273 4.16987 4.21218 4.29734 4.41529 4.59269 4.68979 4.84284 4.95317 5.06660 5.14275 5.22786 5.31311 5.35761 5.36291 5.40463 5.42506 5.53284 5.55398 5.62970 5.65177 5.69946 5.77528 5.82949 5.95723 6.08859 6.16214 6.25472 6.57745 6.71628 6.97279 7.18579 7.30414 7.37904 7.66048 7.67529 7.87411 8.05033 8.60094 9.20803 10.33105 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.002623 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.717050 B =10672.110901 C =12019.801923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.050 3.950 4 C -0.124 4.124 5 C -0.189 4.189 6 C 0.115 3.885 7 C -0.189 4.189 8 C 0.264 3.736 9 N -0.431 5.431 10 C 0.598 3.402 11 O -0.542 6.542 12 N -0.619 5.619 13 C 0.093 3.907 14 C -0.131 4.131 15 C -0.134 4.134 16 C 0.107 3.893 17 C -0.046 4.046 18 C -0.209 4.209 19 C 0.162 3.838 20 O -0.178 6.178 21 C -0.385 4.385 22 H 0.113 0.887 23 C 0.068 3.932 24 N -0.855 5.855 25 Si 0.906 3.094 26 H -0.269 1.269 27 H -0.279 1.279 28 H -0.251 1.251 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 15.143 -2.540 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.005 3.995 4 C -0.143 4.143 5 C -0.191 4.191 6 C 0.091 3.909 7 C -0.196 4.196 8 C -0.048 4.048 9 N -0.108 5.108 10 C 0.389 3.611 11 O -0.422 6.422 12 N -0.353 5.353 13 C -0.030 4.030 14 C -0.169 4.169 15 C -0.172 4.172 16 C -0.015 4.015 17 C -0.065 4.065 18 C -0.228 4.228 19 C 0.106 3.894 20 O -0.079 6.079 21 C -0.459 4.459 22 H 0.131 0.869 23 C -0.139 4.139 24 N -0.489 5.489 25 Si 0.730 3.270 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.175 1.175 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.168 0.832 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.133 0.867 43 H 0.162 0.838 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.252 14.436 -3.142 19.193 hybrid contribution -0.462 -0.480 0.142 0.681 sum -12.714 13.956 -3.000 19.116 Atomic orbital electron populations 1.22954 0.79724 1.03287 1.00735 1.86181 1.19999 1.26150 1.89865 1.17984 0.89145 0.84730 1.07605 1.20856 0.98796 0.90360 1.04309 1.18193 0.92851 0.91459 1.16598 1.23007 0.95110 0.88455 0.84306 1.17859 0.97299 0.95749 1.08679 1.25306 0.92792 0.93371 0.93371 1.81299 1.10702 1.07680 1.11100 1.17245 0.83221 0.82001 0.78634 1.90801 1.26341 1.84717 1.40295 1.48308 1.29404 1.09619 1.47969 1.22369 0.88432 0.98200 0.94002 1.22652 1.01715 0.93495 0.99080 1.22810 0.97094 0.97987 0.99350 1.22218 0.95803 0.80928 1.02557 1.20827 0.92178 0.97884 0.95598 1.20675 1.01430 0.90436 1.10307 1.18698 0.87728 0.86847 0.96154 1.83536 1.20860 1.27975 1.75503 1.21014 0.77380 0.97370 1.50177 0.86940 1.24586 0.94555 0.99992 0.94770 1.69601 1.03488 1.32409 1.43405 0.86145 0.80605 0.81052 0.79205 1.19456 1.20402 1.17483 0.88870 0.93090 0.93201 0.85158 0.83150 0.91006 0.91100 0.90392 0.89848 0.89673 0.90441 0.91336 0.90078 0.86711 0.83832 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.31 -5.72 10.28 -34.12 -0.35 -6.07 16 3 C 0.05 0.97 6.70 -39.11 -0.26 0.71 16 4 C -0.12 -1.95 8.79 -38.90 -0.34 -2.29 16 5 C -0.19 -3.00 5.50 -105.08 -0.58 -3.58 16 6 C 0.11 1.52 9.43 -36.44 -0.34 1.18 16 7 C -0.19 -2.59 5.82 -104.50 -0.61 -3.20 16 8 C 0.26 3.97 7.84 -22.47 -0.18 3.79 16 9 N -0.43 -7.11 17.06 41.84 0.71 -6.39 16 10 C 0.60 8.21 7.81 -12.66 -0.10 8.11 16 11 O -0.54 -8.51 16.56 5.24 0.09 -8.42 16 12 N -0.62 -7.19 3.33 -171.90 -0.57 -7.76 16 13 C 0.09 0.98 4.99 -3.07 -0.02 0.96 16 14 C -0.13 -0.96 6.95 -24.90 -0.17 -1.13 16 15 C -0.13 -0.88 7.08 -24.58 -0.17 -1.05 16 16 C 0.11 0.95 6.91 -2.53 -0.02 0.94 16 17 C -0.05 -0.82 8.23 -39.43 -0.32 -1.15 16 18 C -0.21 -4.35 9.09 -39.86 -0.36 -4.71 16 19 C 0.16 3.62 6.67 -38.69 -0.26 3.36 16 20 O -0.18 -4.52 8.35 -13.54 -0.11 -4.63 16 21 C -0.39 -10.30 9.94 30.93 0.31 -10.00 16 22 H 0.11 3.05 5.42 -52.48 -0.28 2.77 16 23 C 0.07 1.81 5.50 -17.51 -0.10 1.72 16 24 N -0.86 -23.35 13.96 55.49 0.77 -22.58 16 25 Si 0.91 20.72 28.62 -169.99 -4.86 15.85 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.25 -5.86 7.11 56.52 0.40 -5.45 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 31 H 0.05 0.53 7.67 -51.93 -0.40 0.14 16 32 H 0.13 1.59 6.29 -52.49 -0.33 1.26 16 33 H 0.15 1.67 7.61 -52.49 -0.40 1.27 16 34 H 0.07 0.84 6.71 -51.93 -0.35 0.49 16 35 H 0.07 0.82 6.87 -51.93 -0.36 0.46 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 42 H 0.12 1.96 5.98 -52.48 -0.31 1.65 16 43 H 0.14 3.13 5.63 -52.49 -0.30 2.83 16 44 H 0.29 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -30.68 371.57 -6.47 -37.15 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.21 Total: 2.26 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.53 Total: -5.00 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.92 Total: -36.73 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.38 Total: -19.13 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.86 Total: 15.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.68 -6.47 -37.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016438112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.659 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds