Wall clock time and date at job start Tue Mar 31 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86800 * 119.99820 * 2 1 4 4 H 1.48494 * 109.46904 * 240.00030 * 3 2 1 5 5 H 1.48497 * 109.46951 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46705 * 120.00095 * 3 2 1 7 7 C 1.38628 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99654 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00370 * 359.97438 * 7 2 1 10 10 C 1.35779 * 116.99798 * 174.96499 * 9 7 2 11 11 C 1.38906 * 120.00347 * 5.34385 * 10 9 7 12 12 C 1.38000 * 120.00480 * 180.02562 * 11 10 9 13 13 C 1.38919 * 119.99732 * 0.02562 * 12 11 10 14 14 N 1.39994 * 119.99908 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00004 * 35.13120 * 14 13 12 16 16 O 1.21288 * 119.99782 * 355.48029 * 15 14 13 17 17 C 1.50706 * 120.00044 * 175.49221 * 15 14 13 18 18 C 1.50693 * 109.47230 * 179.97438 * 17 15 14 19 19 C 1.38232 * 120.00099 * 89.99662 * 18 17 15 20 20 C 1.38237 * 120.00116 * 179.97438 * 19 18 17 21 21 C 1.38241 * 120.00023 * 0.02562 * 20 19 18 22 22 N 1.48011 * 120.00201 * 179.97438 * 21 20 19 23 23 O 1.21801 * 120.00001 * 359.97438 * 22 21 20 24 24 O 1.21798 * 120.00159 * 179.72153 * 22 21 20 25 25 C 1.38233 * 119.99817 * 0.25021 * 21 20 19 26 26 C 1.38240 * 120.00007 * 359.49759 * 25 21 20 27 27 C 1.38913 * 119.99930 * 0.25753 * 13 12 11 28 28 C 1.38013 * 119.99611 * 359.48498 * 27 13 12 29 29 H 0.96998 * 120.00461 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99600 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.99903 * 179.97438 * 12 11 10 32 32 H 0.97001 * 120.00295 * 215.12300 * 14 13 12 33 33 H 1.08997 * 109.46960 * 59.99048 * 17 15 14 34 34 H 1.08999 * 109.46898 * 299.99654 * 17 15 14 35 35 H 1.07993 * 120.00205 * 359.97438 * 19 18 17 36 36 H 1.07996 * 120.00435 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00307 * 179.73470 * 25 21 20 38 38 H 1.08002 * 120.00085 * 180.26010 * 26 25 21 39 39 H 1.07998 * 120.00273 * 179.74623 * 27 13 12 40 40 H 1.07993 * 119.99693 * 180.25761 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 -0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0703 -3.5044 -0.1073 11 6 3.4577 -3.4373 -0.0982 12 6 4.2053 -4.5921 -0.2072 13 6 3.5702 -5.8219 -0.3265 14 7 4.3285 -6.9934 -0.4376 15 6 5.4947 -7.1070 0.2284 16 8 5.9277 -6.1651 0.8579 17 6 6.2608 -8.4043 0.1907 18 6 7.5190 -8.2687 1.0088 19 6 7.5055 -8.5833 2.3548 20 6 8.6598 -8.4594 3.1052 21 6 9.8276 -8.0203 2.5097 22 7 11.0634 -7.8871 3.3132 23 8 11.0514 -8.1639 4.4993 24 8 12.0935 -7.5050 2.7875 25 6 9.8396 -7.7002 1.1650 26 6 8.6866 -7.8291 0.4134 27 6 2.1827 -5.8885 -0.3415 28 6 1.4352 -4.7340 -0.2271 29 1 -0.4851 0.8400 -0.0004 30 1 3.9514 -2.4812 -0.0059 31 1 5.2840 -4.5398 -0.2006 32 1 4.0146 -7.7235 -0.9939 33 1 6.5220 -8.6421 -0.8405 34 1 5.6435 -9.2028 0.6024 35 1 6.5932 -8.9260 2.8201 36 1 8.6493 -8.7049 4.1568 37 1 10.7508 -7.3530 0.7006 38 1 8.6970 -7.5830 -0.6381 39 1 1.6890 -6.8442 -0.4383 40 1 0.3566 -4.7862 -0.2346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018830478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:27 Heat of formation + Delta-G solvation = -7.496767 kcal Electronic energy + Delta-G solvation = -27321.106965 eV Core-core repulsion = 23070.317779 eV Total energy + Delta-G solvation = -4250.789185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.109 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.41516 -40.67939 -39.63897 -38.67440 -36.79728 -36.63889 -34.14558 -33.79498 -32.25154 -31.82690 -30.31472 -29.78163 -27.84639 -25.84816 -25.21790 -23.62964 -22.78351 -22.24338 -21.41661 -20.23141 -19.66592 -18.90504 -18.25682 -17.77075 -17.72911 -17.06086 -16.65007 -16.24910 -15.94860 -15.20370 -15.11291 -14.57783 -14.43442 -14.30745 -14.15148 -13.71451 -13.66108 -13.30962 -12.97613 -12.81609 -12.68918 -12.46340 -11.94507 -11.80664 -11.73869 -11.64888 -11.60642 -11.42441 -11.37269 -11.06105 -10.84648 -10.49938 -10.10261 -9.81512 -9.77934 -9.69578 -9.27060 -8.77032 -8.30630 -7.04910 -6.50371 -4.08282 -0.48108 0.57085 1.02439 1.14511 1.93327 2.11203 2.61462 2.77208 3.11515 3.12143 3.14844 3.22718 3.89378 3.93107 3.94680 4.10842 4.35721 4.44577 4.50167 4.61369 4.82400 4.83733 4.93945 5.03597 5.17663 5.22675 5.33892 5.36328 5.57005 5.64758 5.73249 5.86253 6.01653 6.07066 6.16865 6.22676 6.61787 6.74866 6.89367 6.98668 7.21723 7.35632 7.39203 7.50814 7.67346 7.94237 8.15019 8.95101 9.63016 10.67162 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002090 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.032171 B =13391.385687 C =14870.509931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.148 3.852 11 C -0.222 4.222 12 C -0.062 4.062 13 C 0.027 3.973 14 N -0.657 5.657 15 C 0.505 3.495 16 O -0.518 6.518 17 C -0.111 4.111 18 C -0.009 4.009 19 C -0.103 4.103 20 C -0.051 4.051 21 C -0.048 4.048 22 N 0.030 4.970 23 O -0.163 6.163 24 O -0.163 6.163 25 C -0.052 4.052 26 C -0.104 4.104 27 C -0.091 4.091 28 C -0.179 4.179 29 H 0.271 0.729 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.403 0.597 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.115 0.885 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.327 -20.831 -1.513 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.093 3.907 11 C -0.242 4.242 12 C -0.082 4.082 13 C -0.065 4.065 14 N -0.301 5.301 15 C 0.291 3.709 16 O -0.393 6.393 17 C -0.151 4.151 18 C -0.010 4.010 19 C -0.122 4.122 20 C -0.071 4.071 21 C -0.131 4.131 22 N 0.549 4.451 23 O -0.378 6.378 24 O -0.379 6.379 25 C -0.071 4.071 26 C -0.123 4.123 27 C -0.111 4.111 28 C -0.199 4.199 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.237 0.763 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.165 0.835 39 H 0.133 0.867 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.616 -19.997 -1.400 23.686 hybrid contribution 0.614 0.510 -0.034 0.798 sum 13.230 -19.488 -1.434 23.598 Atomic orbital electron populations 1.70031 1.05958 1.27903 1.45685 1.25294 0.95863 0.98873 0.96416 0.85776 0.78725 0.79653 0.79296 1.19449 1.20215 1.19414 1.21293 0.91839 0.80777 1.52913 0.89042 1.83972 1.34311 1.11448 1.77980 1.19424 0.90276 0.88167 0.92811 1.21109 0.93592 0.98813 1.10659 1.20824 0.99700 0.90348 0.97340 1.17215 0.89883 0.85155 1.14251 1.43147 1.21557 1.17799 1.47620 1.20303 0.81648 0.89381 0.79539 1.90774 1.67204 1.39644 1.41723 1.20816 0.94258 0.97598 1.02419 1.19772 0.94225 0.93004 0.93967 1.21070 0.97878 1.00220 0.93013 1.21027 0.89967 0.94278 1.01781 1.21131 0.85751 1.13452 0.92744 1.43636 1.02541 0.97690 1.01245 1.94540 1.91883 1.52737 0.98679 1.94537 1.20914 1.48073 1.74331 1.21020 1.00516 0.94794 0.90745 1.21067 0.90941 0.99170 1.01091 1.20347 0.91390 0.97471 1.01869 1.20003 0.99540 0.89856 1.10468 0.91888 0.85202 0.85827 0.76274 0.86928 0.86859 0.83537 0.82864 0.82873 0.83549 0.86703 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -10.84 9.48 30.88 0.29 -10.55 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 9 O -0.17 -4.87 9.76 0.01 0.00 -4.87 16 10 C 0.15 3.47 6.65 -39.09 -0.26 3.21 16 11 C -0.22 -4.84 9.16 -39.42 -0.36 -5.20 16 12 C -0.06 -1.18 8.69 -39.42 -0.34 -1.52 16 13 C 0.03 0.43 6.30 -83.63 -0.53 -0.09 16 14 N -0.66 -7.20 5.34 -9.82 -0.05 -7.25 16 15 C 0.51 5.52 7.67 -10.98 -0.08 5.44 16 16 O -0.52 -8.19 13.47 5.55 0.07 -8.12 16 17 C -0.11 -0.61 5.83 -29.04 -0.17 -0.78 16 18 C -0.01 -0.07 4.37 -104.63 -0.46 -0.52 16 19 C -0.10 -0.76 9.70 -39.58 -0.38 -1.15 16 20 C -0.05 -0.44 9.56 -39.58 -0.38 -0.82 16 21 C -0.05 -0.48 6.85 -79.95 -0.55 -1.03 16 22 N 0.03 0.37 4.45 33.96 0.15 0.52 16 23 O -0.16 -2.12 18.45 -29.46 -0.54 -2.66 16 24 O -0.16 -2.11 18.45 -29.46 -0.54 -2.65 16 25 C -0.05 -0.44 9.56 -39.58 -0.38 -0.82 16 26 C -0.10 -0.75 9.70 -39.58 -0.38 -1.14 16 27 C -0.09 -1.45 9.96 -39.41 -0.39 -1.85 16 28 C -0.18 -3.55 9.99 -39.42 -0.39 -3.94 16 29 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.13 2.88 5.63 -52.49 -0.30 2.58 16 31 H 0.12 2.32 6.23 -52.48 -0.33 1.99 16 32 H 0.40 2.74 8.82 -40.82 -0.36 2.38 16 33 H 0.11 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.11 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.15 1.11 7.61 -52.49 -0.40 0.71 16 37 H 0.15 1.09 7.61 -52.49 -0.40 0.69 16 38 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -35.18 361.23 -8.32 -43.49 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.72 Total: 4.61 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -4.86 Total: -19.76 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.86 Total: -30.87 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.01 Total: -18.30 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.18 -8.32 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018830478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.997 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds