Wall clock time and date at job start Tue Mar 31 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21452 * 120.00456 * 2 1 4 4 C 1.40977 * 119.99760 * 180.02562 * 2 1 3 5 5 C 1.36152 * 126.69155 * 355.90159 * 4 2 1 6 6 O 1.35249 * 125.43670 * 359.95804 * 5 4 2 7 7 C 1.47290 * 109.12057 * 179.97438 * 5 4 2 8 8 O 1.21633 * 124.94897 * 180.02562 * 7 5 4 9 9 N 1.34497 * 110.09921 * 0.02562 * 7 5 4 10 10 C 1.35994 * 125.99367 * 180.26120 * 9 7 5 11 11 H 1.07998 * 119.99630 * 333.70907 * 10 9 7 12 12 C 1.39691 * 120.00589 * 153.69841 * 10 9 7 13 13 N 1.30954 * 120.00314 * 156.88479 * 12 10 9 14 14 Si 1.86803 * 120.00179 * 336.88852 * 12 10 9 15 15 H 1.48502 * 109.47155 * 95.56415 * 14 12 10 16 16 H 1.48497 * 109.47512 * 215.57213 * 14 12 10 17 17 H 1.48508 * 109.46826 * 335.56974 * 14 12 10 18 18 C 1.46764 * 108.02462 * 359.97438 * 9 7 5 19 19 H 1.08994 * 110.12026 * 240.83356 * 18 9 7 20 20 C 1.50706 * 110.11815 * 119.16890 * 18 9 7 21 21 C 1.38230 * 119.99770 * 322.77533 * 20 18 9 22 22 C 1.38240 * 119.99745 * 179.81331 * 21 20 18 23 23 C 1.38234 * 119.99857 * 0.41507 * 22 21 20 24 24 C 1.50700 * 120.00129 * 179.79210 * 23 22 21 25 25 C 1.52999 * 109.47397 * 240.02738 * 24 23 22 26 26 C 1.53005 * 109.47151 * 0.02562 * 24 23 22 27 27 C 1.53001 * 109.47266 * 120.02414 * 24 23 22 28 28 C 1.38230 * 120.00257 * 359.81669 * 23 22 21 29 29 C 1.38237 * 119.99839 * 143.05106 * 20 18 9 30 30 H 1.09003 * 109.46922 * 273.81326 * 1 2 3 31 31 H 1.09004 * 109.46802 * 33.81466 * 1 2 3 32 32 H 1.08995 * 109.47050 * 153.81292 * 1 2 3 33 33 H 0.96706 * 113.99889 * 180.02562 * 6 5 4 34 34 H 0.96997 * 120.00227 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.00418 * 359.97438 * 21 20 18 36 36 H 1.07998 * 119.99892 * 180.21090 * 22 21 20 37 37 H 1.09001 * 109.47152 * 59.99528 * 25 24 23 38 38 H 1.08996 * 109.47172 * 179.97438 * 25 24 23 39 39 H 1.09004 * 109.46504 * 299.99484 * 25 24 23 40 40 H 1.09004 * 109.46783 * 59.99661 * 26 24 23 41 41 H 1.08996 * 109.47331 * 179.97438 * 26 24 23 42 42 H 1.09001 * 109.47150 * 300.00320 * 26 24 23 43 43 H 1.08996 * 109.47269 * 60.00123 * 27 24 23 44 44 H 1.08999 * 109.46857 * 180.02562 * 27 24 23 45 45 H 1.09002 * 109.47134 * 300.00007 * 27 24 23 46 46 H 1.08002 * 120.00577 * 179.97438 * 28 23 22 47 47 H 1.07997 * 119.99772 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1144 1.0518 0.0000 4 6 2.2119 -1.2209 -0.0005 5 6 1.6755 -2.4699 0.0769 6 8 0.3561 -2.7524 0.1696 7 6 2.7616 -3.4643 0.0441 8 8 2.6048 -4.6694 0.0958 9 7 3.9520 -2.8456 -0.0515 10 6 5.1666 -3.4543 -0.1108 11 1 5.3022 -4.4326 0.3260 12 6 6.2389 -2.8142 -0.7368 13 7 7.4684 -3.1407 -0.4258 14 14 5.9192 -1.4925 -2.0175 15 1 5.9729 -0.1556 -1.3733 16 1 6.9536 -1.5720 -3.0800 17 1 4.5765 -1.6992 -2.6175 18 6 3.7100 -1.3985 -0.0875 19 1 4.0839 -0.9789 -1.0214 20 6 4.3798 -0.7315 1.0862 21 6 4.4089 -1.3627 2.3157 22 6 5.0267 -0.7526 3.3914 23 6 5.6079 0.4924 3.2397 24 6 6.2773 1.1596 4.4135 25 6 5.5865 2.4935 4.7041 26 6 6.1740 0.2535 5.6421 27 6 7.7509 1.4090 4.0862 28 6 5.5746 1.1257 2.0115 29 6 4.9601 0.5140 0.9348 30 1 -0.3633 0.0683 1.0254 31 1 -0.3633 0.8539 -0.5719 32 1 -0.3633 -0.9221 -0.4535 33 1 0.1586 -3.6980 0.2156 34 1 8.2130 -2.6960 -0.8602 35 1 3.9513 -2.3336 2.4352 36 1 5.0524 -1.2473 4.3511 37 1 4.5367 2.3158 4.9373 38 1 6.0704 2.9758 5.5533 39 1 5.6602 3.1389 3.8288 40 1 6.6661 -0.6968 5.4351 41 1 6.6586 0.7359 6.4910 42 1 5.1242 0.0758 5.8753 43 1 7.8245 2.0544 3.2110 44 1 8.2351 1.8911 4.9354 45 1 8.2430 0.4586 3.8792 46 1 6.0283 2.0986 1.8930 47 1 4.9338 1.0088 -0.0248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019087787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:42 Heat of formation + Delta-G solvation = -69.731113 kcal Electronic energy + Delta-G solvation = -31617.746576 eV Core-core repulsion = 27538.206234 eV Total energy + Delta-G solvation = -4079.540342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.68849 -40.64780 -39.94973 -38.94428 -37.86534 -36.72867 -35.23500 -33.12311 -32.09390 -31.62876 -30.65259 -28.24768 -28.06452 -27.71957 -26.95846 -24.54309 -23.35489 -23.03970 -22.07971 -20.31382 -20.09552 -19.60624 -18.97768 -18.19630 -17.53523 -16.96905 -16.55096 -16.36730 -16.10224 -15.95525 -15.74510 -15.60781 -15.31792 -15.12267 -15.03350 -14.81514 -14.57843 -14.51095 -14.26023 -14.23248 -14.02937 -13.59776 -13.21504 -13.07661 -12.98211 -12.86534 -12.84930 -12.65804 -12.61974 -12.51669 -12.32012 -11.94225 -11.79725 -11.62875 -11.42365 -11.33929 -11.02450 -10.60251 -10.35217 -9.81983 -9.75754 -9.40064 -8.85165 -6.28875 -0.63417 0.39492 0.53347 1.07891 1.14209 1.21202 1.47523 1.92106 1.99707 2.14116 2.54276 2.75126 2.87942 2.96638 3.44554 3.60354 3.70339 3.81311 3.91437 3.99495 4.13561 4.15479 4.24538 4.36260 4.40526 4.54789 4.64264 4.66426 4.74232 4.81711 4.83686 4.90950 4.92421 5.00499 5.02902 5.04982 5.05389 5.15466 5.16014 5.25033 5.32408 5.38579 5.48303 5.56168 5.64470 5.68925 5.73590 6.03137 6.11015 6.19962 6.55660 6.68194 6.80807 7.47935 8.28017 Molecular weight = 343.16amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.005434 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.051869 B = 5151.849637 C = 6304.056063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.414 3.586 3 O -0.500 6.500 4 C -0.293 4.293 5 C 0.181 3.819 6 O -0.411 6.411 7 C 0.406 3.594 8 O -0.604 6.604 9 N -0.404 5.404 10 C -0.323 4.323 11 H 0.081 0.919 12 C 0.054 3.946 13 N -0.849 5.849 14 Si 0.900 3.100 15 H -0.233 1.233 16 H -0.266 1.266 17 H -0.264 1.264 18 C 0.187 3.813 19 H 0.084 0.916 20 C -0.083 4.083 21 C -0.096 4.096 22 C -0.128 4.128 23 C -0.068 4.068 24 C -0.028 4.028 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.136 4.136 28 C -0.121 4.121 29 C -0.102 4.102 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.427 0.573 34 H 0.292 0.708 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.041 0.959 46 H 0.141 0.859 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 11.957 7.365 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.298 3.702 3 O -0.381 6.381 4 C -0.299 4.299 5 C 0.125 3.875 6 O -0.215 6.215 7 C 0.198 3.802 8 O -0.493 6.493 9 N -0.120 5.120 10 C -0.450 4.450 11 H 0.098 0.902 12 C -0.157 4.157 13 N -0.482 5.482 14 Si 0.723 3.277 15 H -0.157 1.157 16 H -0.192 1.192 17 H -0.190 1.190 18 C 0.084 3.916 19 H 0.101 0.899 20 C -0.083 4.083 21 C -0.115 4.115 22 C -0.146 4.146 23 C -0.068 4.068 24 C -0.028 4.028 25 C -0.189 4.189 26 C -0.199 4.199 27 C -0.194 4.194 28 C -0.138 4.138 29 C -0.121 4.121 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.286 0.714 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.157 0.843 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.159 0.841 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.428 12.447 7.360 15.825 hybrid contribution 0.285 -1.108 -1.059 1.559 sum -6.144 11.339 6.301 14.354 Atomic orbital electron populations 1.22194 0.90089 1.05864 1.05746 1.20598 0.93212 0.85454 0.70945 1.90544 1.72993 1.34656 1.39951 1.21034 0.93452 0.94429 1.21033 1.21157 0.84412 0.93357 0.88556 1.84708 1.15692 1.35075 1.86008 1.19150 0.84580 0.88213 0.88281 1.90675 1.84538 1.14595 1.59508 1.43604 1.05532 1.05073 1.57762 1.18650 0.83983 1.04157 1.38202 0.90157 1.25760 0.93873 0.98763 0.97351 1.69567 0.99521 1.41260 1.37827 0.86569 0.78879 0.81594 0.80640 1.15653 1.19156 1.18978 1.19317 0.92665 0.81987 0.97675 0.89868 1.19348 0.99940 0.95430 0.93603 1.20780 0.99412 0.98402 0.92875 1.21248 0.98867 0.95742 0.98738 1.20095 0.97308 0.94092 0.95304 1.19562 0.95310 0.95962 0.91934 1.21847 1.00120 0.94735 1.02244 1.21948 1.02117 0.99087 0.96769 1.21879 0.93849 1.01344 1.02284 1.21044 1.00114 1.00614 0.92075 1.20975 0.97340 0.94213 0.99522 0.87356 0.88421 0.88018 0.71350 0.89663 0.88581 0.84309 0.93058 0.90392 0.92489 0.93211 0.90440 0.92261 0.92472 0.90239 0.93999 0.84146 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 9.65 71.24 0.69 -3.48 16 2 C 0.41 13.88 7.00 26.36 0.18 14.06 16 3 O -0.50 -19.24 16.52 -3.56 -0.06 -19.30 16 4 C -0.29 -11.10 5.47 -19.55 -0.11 -11.21 16 5 C 0.18 6.49 7.29 24.17 0.18 6.67 16 6 O -0.41 -10.18 10.88 -85.32 -0.93 -11.11 16 7 C 0.41 18.98 7.89 86.67 0.68 19.67 16 8 O -0.60 -31.38 17.60 -4.13 -0.07 -31.45 16 9 N -0.40 -20.14 1.74 -624.08 -1.08 -21.22 16 10 C -0.32 -18.13 9.72 84.40 0.82 -17.31 16 11 H 0.08 5.07 8.06 -2.91 -0.02 5.05 16 12 C 0.05 2.87 5.32 85.17 0.45 3.33 16 13 N -0.85 -46.58 13.93 21.78 0.30 -46.28 16 14 Si 0.90 40.73 24.23 68.60 1.66 42.39 16 15 H -0.23 -9.78 5.31 99.48 0.53 -9.26 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 H -0.26 -12.06 6.73 99.48 0.67 -11.39 16 18 C 0.19 8.29 1.97 43.58 0.09 8.37 16 19 H 0.08 3.84 3.34 -2.39 -0.01 3.83 16 20 C -0.08 -3.52 3.92 -19.86 -0.08 -3.60 16 21 C -0.10 -4.00 9.15 22.27 0.20 -3.80 16 22 C -0.13 -4.49 8.98 22.27 0.20 -4.29 16 23 C -0.07 -2.12 4.76 -19.87 -0.09 -2.22 16 24 C -0.03 -0.64 0.85 -52.93 -0.05 -0.69 16 25 C -0.13 -2.56 8.29 71.98 0.60 -1.96 16 26 C -0.14 -2.94 7.13 71.98 0.51 -2.42 16 27 C -0.14 -2.96 8.29 71.98 0.60 -2.36 16 28 C -0.12 -4.02 8.71 22.27 0.19 -3.83 16 29 C -0.10 -4.01 7.90 22.27 0.18 -3.84 16 30 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.10 2.13 5.80 -2.39 -0.01 2.12 16 33 H 0.43 7.77 8.86 -74.05 -0.66 7.12 16 34 H 0.29 14.64 8.30 -92.71 -0.77 13.87 16 35 H 0.10 4.28 7.65 -2.91 -0.02 4.25 16 36 H 0.14 4.22 5.90 -2.91 -0.02 4.20 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.10 7.39 -2.38 -0.02 1.09 16 40 H 0.05 1.13 7.51 -2.39 -0.02 1.12 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.21 7.51 -2.39 -0.02 1.19 16 43 H 0.06 1.22 7.39 -2.39 -0.02 1.21 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.14 3.87 7.10 -2.91 -0.02 3.84 16 47 H 0.11 4.46 7.13 -2.91 -0.02 4.44 16 Total: -1.00 -69.44 375.27 5.22 -64.22 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.15 Total: 31.65 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 5.25 Total: -8.90 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -0.78 Total: -67.50 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -1.06 Total: -61.86 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.66 Total: 42.39 kcal Total: -69.44 5.22 -64.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019087787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.509 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds