Wall clock time and date at job start Tue Mar 31 2020 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21451 * 119.99817 * 2 1 4 4 C 1.40977 * 120.00171 * 180.02562 * 2 1 3 5 5 C 1.36150 * 126.69254 * 174.46342 * 4 2 1 6 6 O 1.35251 * 125.43737 * 359.95991 * 5 4 2 7 7 C 1.47291 * 109.12266 * 179.97438 * 5 4 2 8 8 O 1.21630 * 124.95141 * 180.02562 * 7 5 4 9 9 N 1.34501 * 110.09672 * 0.02562 * 7 5 4 10 10 C 1.35999 * 125.98876 * 180.26205 * 9 7 5 11 11 H 1.08001 * 119.99481 * 19.97795 * 10 9 7 12 12 C 1.39692 * 119.99970 * 199.97556 * 10 9 7 13 13 N 1.30954 * 120.00143 * 9.63037 * 12 10 9 14 14 Si 1.86803 * 119.99938 * 189.62460 * 12 10 9 15 15 H 1.48506 * 109.46906 * 90.00556 * 14 12 10 16 16 H 1.48494 * 109.47078 * 210.00131 * 14 12 10 17 17 H 1.48497 * 109.47181 * 330.00591 * 14 12 10 18 18 C 1.46765 * 108.02533 * 359.97438 * 9 7 5 19 19 H 1.09001 * 110.11935 * 119.17081 * 18 9 7 20 20 C 1.50702 * 110.12024 * 240.77121 * 18 9 7 21 21 C 1.38235 * 120.00181 * 47.74282 * 20 18 9 22 22 C 1.38239 * 119.99948 * 179.79051 * 21 20 18 23 23 C 1.38234 * 119.99770 * 0.46500 * 22 21 20 24 24 C 1.50702 * 119.99651 * 179.79050 * 23 22 21 25 25 C 1.53001 * 109.47135 * 239.98032 * 24 23 22 26 26 C 1.53001 * 109.47270 * 359.97438 * 24 23 22 27 27 C 1.53002 * 109.47060 * 119.98004 * 24 23 22 28 28 C 1.38227 * 119.99988 * 359.76928 * 23 22 21 29 29 C 1.38236 * 120.00619 * 0.02562 * 28 23 22 30 30 H 1.08999 * 109.47247 * 175.02039 * 1 2 3 31 31 H 1.09000 * 109.46933 * 295.00982 * 1 2 3 32 32 H 1.08998 * 109.47376 * 55.01785 * 1 2 3 33 33 H 0.96699 * 114.00377 * 180.02562 * 6 5 4 34 34 H 0.96999 * 120.00144 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.00132 * 0.02562 * 21 20 18 36 36 H 1.07998 * 119.99684 * 180.25740 * 22 21 20 37 37 H 1.09000 * 109.46895 * 60.00013 * 25 24 23 38 38 H 1.08997 * 109.46914 * 180.02562 * 25 24 23 39 39 H 1.09002 * 109.47059 * 300.00198 * 25 24 23 40 40 H 1.08998 * 109.47168 * 59.99502 * 26 24 23 41 41 H 1.09002 * 109.47302 * 180.02562 * 26 24 23 42 42 H 1.09001 * 109.46910 * 299.99686 * 26 24 23 43 43 H 1.08999 * 109.47149 * 59.99374 * 27 24 23 44 44 H 1.08997 * 109.46943 * 180.02562 * 27 24 23 45 45 H 1.09000 * 109.47044 * 299.99664 * 27 24 23 46 46 H 1.08004 * 119.99742 * 179.97438 * 28 23 22 47 47 H 1.07998 * 120.00095 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0518 0.0000 4 6 2.2119 -1.2209 -0.0005 5 6 3.5597 -1.3820 -0.1059 6 8 4.4617 -0.3819 -0.2305 7 6 3.8787 -2.8193 -0.0631 8 8 4.9993 -3.2868 -0.1341 9 7 2.7501 -3.5395 0.0661 10 6 2.6715 -4.8950 0.1433 11 1 3.5408 -5.4711 0.4239 12 6 1.4664 -5.5421 -0.1404 13 7 0.4693 -4.8708 -0.6603 14 14 1.2772 -7.3649 0.2216 15 1 0.7614 -7.5443 1.6026 16 1 0.3229 -7.9650 -0.7449 17 1 2.5967 -8.0342 0.0952 18 6 1.6188 -2.6059 0.1161 19 1 0.9402 -2.7942 -0.7159 20 6 0.8858 -2.7492 1.4250 21 6 1.5915 -2.7723 2.6134 22 6 0.9187 -2.8994 3.8144 23 6 -0.4589 -3.0131 3.8262 24 6 -1.1919 -3.1564 5.1351 25 6 -1.9659 -4.4762 5.1443 26 6 -0.1850 -3.1478 6.2871 27 6 -2.1689 -1.9910 5.3028 28 6 -1.1641 -2.9949 2.6374 29 6 -0.4918 -2.8635 1.4368 30 1 -0.3634 -1.0238 -0.0892 31 1 -0.3633 0.4345 0.9313 32 1 -0.3634 0.5892 -0.8420 33 1 5.3781 -0.6842 -0.2931 34 1 -0.3673 -5.3202 -0.8576 35 1 2.6680 -2.6872 2.6040 36 1 1.4697 -2.9132 4.7431 37 1 -1.2698 -5.3064 5.0249 38 1 -2.4964 -4.5796 6.0909 39 1 -2.6832 -4.4825 4.3236 40 1 0.3665 -2.2077 6.2805 41 1 -0.7152 -3.2519 7.2338 42 1 0.5109 -3.9781 6.1676 43 1 -2.8861 -1.9972 4.4820 44 1 -2.6987 -2.0944 6.2497 45 1 -1.6175 -1.0508 5.2962 46 1 -2.2404 -3.0841 2.6467 47 1 -1.0428 -2.8497 0.5080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019087794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:48 Heat of formation + Delta-G solvation = -65.473454 kcal Electronic energy + Delta-G solvation = -31628.469040 eV Core-core repulsion = 27549.113324 eV Total energy + Delta-G solvation = -4079.355716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.74912 -39.27202 -38.23402 -37.21976 -36.21066 -35.04828 -33.36135 -31.25383 -30.53092 -29.75305 -29.25304 -27.27420 -27.20614 -25.71327 -25.41229 -22.85346 -21.84567 -21.43855 -20.34925 -18.94230 -18.31646 -17.74061 -17.15231 -16.26534 -15.76706 -15.30605 -14.89838 -14.72128 -14.53781 -14.37676 -14.19227 -14.02791 -14.01020 -13.77800 -13.48029 -13.26231 -13.00326 -12.77506 -12.63599 -12.46558 -12.24517 -12.01799 -11.78674 -11.71100 -11.64915 -11.64748 -11.47615 -11.33764 -11.29984 -11.01071 -10.90698 -10.73672 -10.62856 -10.31638 -10.15839 -9.72007 -9.32655 -8.68363 -8.40149 -8.23454 -8.04911 -7.88242 -6.81110 -4.25473 1.20108 1.88656 2.00749 2.93745 3.03115 3.05813 3.26211 3.71269 4.01386 4.07278 4.33623 4.54550 4.74214 4.75038 4.86361 4.86558 5.07570 5.21413 5.41185 5.48695 5.51243 5.57152 5.60396 5.62915 5.66446 5.70892 5.78992 5.87019 5.88616 5.89427 5.96768 6.07197 6.09206 6.17086 6.21142 6.35690 6.37315 6.45320 6.51173 6.59811 6.68089 6.78854 7.00367 7.06982 7.09396 7.32104 7.38479 7.57117 7.78512 8.05506 8.29099 8.69379 8.76272 9.57250 10.18033 Molecular weight = 343.16amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.005745 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.305107 B = 4872.625721 C = 6693.138360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.418 3.582 3 O -0.484 6.484 4 C -0.308 4.308 5 C 0.156 3.844 6 O -0.428 6.428 7 C 0.402 3.598 8 O -0.592 6.592 9 N -0.371 5.371 10 C -0.288 4.288 11 H 0.112 0.888 12 C 0.048 3.952 13 N -0.840 5.840 14 Si 0.933 3.067 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.264 1.264 18 C 0.213 3.787 19 H 0.141 0.859 20 C -0.039 4.039 21 C -0.095 4.095 22 C -0.127 4.127 23 C -0.082 4.082 24 C -0.027 4.027 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.136 4.136 28 C -0.126 4.126 29 C -0.081 4.081 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.401 0.599 34 H 0.282 0.718 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.112 0.888 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 2.062 7.969 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.302 3.698 3 O -0.365 6.365 4 C -0.314 4.314 5 C 0.100 3.900 6 O -0.227 6.227 7 C 0.193 3.807 8 O -0.481 6.481 9 N -0.084 5.084 10 C -0.415 4.415 11 H 0.129 0.871 12 C -0.162 4.162 13 N -0.475 5.475 14 Si 0.758 3.242 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.188 1.188 18 C 0.109 3.891 19 H 0.158 0.842 20 C -0.040 4.040 21 C -0.113 4.113 22 C -0.145 4.145 23 C -0.082 4.082 24 C -0.027 4.027 25 C -0.194 4.194 26 C -0.200 4.200 27 C -0.193 4.193 28 C -0.145 4.145 29 C -0.100 4.100 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.254 0.746 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.130 0.870 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.445 2.587 7.882 11.838 hybrid contribution 0.321 -1.288 0.018 1.328 sum -8.124 1.299 7.900 11.406 Atomic orbital electron populations 1.22248 0.95026 1.04702 1.03550 1.19837 0.91118 0.86812 0.72050 1.90553 1.72124 1.34085 1.39744 1.21098 0.92007 0.97009 1.21317 1.21869 0.90116 0.89081 0.88927 1.84871 1.20406 1.31096 1.86368 1.18493 0.86244 0.85943 0.90038 1.90674 1.21948 1.75315 1.60202 1.43464 1.05106 1.05512 1.54340 1.19669 0.98961 0.78852 1.44044 0.87075 1.25505 0.94965 1.01265 0.94446 1.69485 1.04367 1.38031 1.35586 0.85785 0.79082 0.80539 0.78817 1.19547 1.20217 1.18848 1.19304 0.89556 0.82816 0.97445 0.84195 1.19475 0.93366 0.97859 0.93312 1.20885 0.99526 0.98792 0.92108 1.20961 0.93733 1.02210 0.97589 1.19598 0.93442 1.01239 0.93919 1.19434 0.95009 0.95705 0.92529 1.21872 0.99814 0.96427 1.01276 1.21944 0.98867 1.02082 0.97058 1.21866 0.98549 0.97635 1.01231 1.20783 0.99000 1.02638 0.92032 1.20888 0.93548 0.98074 0.97455 0.89717 0.89728 0.89974 0.74575 0.90744 0.87221 0.86524 0.92526 0.92879 0.92486 0.92335 0.92873 0.92292 0.92472 0.92881 0.92580 0.86964 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.99 9.85 36.01 0.35 -2.63 16 2 C 0.42 8.14 6.99 -33.27 -0.23 7.91 16 3 O -0.48 -10.71 16.85 -8.77 -0.15 -10.86 16 4 C -0.31 -6.36 5.31 -104.13 -0.55 -6.92 16 5 C 0.16 3.38 7.38 -36.65 -0.27 3.11 16 6 O -0.43 -8.37 12.72 -33.39 -0.42 -8.79 16 7 C 0.40 9.77 7.89 -12.70 -0.10 9.67 16 8 O -0.59 -15.84 17.60 5.25 0.09 -15.75 16 9 N -0.37 -8.86 2.38 -111.18 -0.26 -9.13 16 10 C -0.29 -7.10 9.60 -15.16 -0.15 -7.24 16 11 H 0.11 2.85 7.86 -52.49 -0.41 2.44 16 12 C 0.05 1.09 5.17 -17.38 -0.09 1.00 16 13 N -0.84 -18.44 9.71 55.53 0.54 -17.90 16 14 Si 0.93 18.26 29.57 -169.99 -5.03 13.23 16 15 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 16 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 17 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 18 C 0.21 4.46 1.55 -69.89 -0.11 4.35 16 19 H 0.14 3.05 6.09 -51.93 -0.32 2.73 16 20 C -0.04 -0.75 3.49 -104.62 -0.37 -1.12 16 21 C -0.09 -1.81 9.23 -39.58 -0.37 -2.17 16 22 C -0.13 -2.08 8.98 -39.58 -0.36 -2.44 16 23 C -0.08 -1.21 4.76 -104.63 -0.50 -1.71 16 24 C -0.03 -0.32 0.85 -155.66 -0.13 -0.45 16 25 C -0.14 -1.53 8.29 37.16 0.31 -1.22 16 26 C -0.14 -1.55 7.13 37.16 0.27 -1.28 16 27 C -0.14 -1.41 8.29 37.16 0.31 -1.10 16 28 C -0.13 -1.90 8.71 -39.59 -0.34 -2.25 16 29 C -0.08 -1.37 7.42 -39.58 -0.29 -1.66 16 30 H 0.08 1.24 4.47 -51.93 -0.23 1.01 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.40 6.14 8.86 45.56 0.40 6.54 16 34 H 0.28 5.79 8.30 -40.82 -0.34 5.45 16 35 H 0.11 2.25 7.98 -52.49 -0.42 1.83 16 36 H 0.12 1.70 5.90 -52.49 -0.31 1.39 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.63 7.39 -51.93 -0.38 0.24 16 40 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 43 H 0.06 0.58 7.39 -51.93 -0.38 0.19 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.11 1.44 7.10 -52.48 -0.37 1.07 16 47 H 0.12 2.00 7.34 -52.49 -0.39 1.61 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -29.39 381.70 -7.78 -37.17 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.68 Total: 12.43 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.62 Total: -6.15 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.28 Total: -27.03 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.48 Total: -35.40 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.39 -7.78 -37.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019087794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.300 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds