Wall clock time and date at job start Tue Mar 31 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21451 * 119.99817 * 2 1 4 4 C 1.40977 * 120.00171 * 180.02562 * 2 1 3 5 5 C 1.36150 * 126.69254 * 174.46342 * 4 2 1 6 6 O 1.35251 * 125.43737 * 359.95991 * 5 4 2 7 7 C 1.47291 * 109.12266 * 179.97438 * 5 4 2 8 8 O 1.21630 * 124.95141 * 180.02562 * 7 5 4 9 9 N 1.34501 * 110.09672 * 0.02562 * 7 5 4 10 10 C 1.35999 * 125.98876 * 180.26205 * 9 7 5 11 11 H 1.08001 * 119.99481 * 19.97795 * 10 9 7 12 12 C 1.39692 * 119.99970 * 199.97556 * 10 9 7 13 13 N 1.30954 * 120.00143 * 9.63037 * 12 10 9 14 14 Si 1.86803 * 119.99938 * 189.62460 * 12 10 9 15 15 H 1.48506 * 109.46906 * 90.00556 * 14 12 10 16 16 H 1.48494 * 109.47078 * 210.00131 * 14 12 10 17 17 H 1.48497 * 109.47181 * 330.00591 * 14 12 10 18 18 C 1.46765 * 108.02533 * 359.97438 * 9 7 5 19 19 H 1.09001 * 110.11935 * 119.17081 * 18 9 7 20 20 C 1.50702 * 110.12024 * 240.77121 * 18 9 7 21 21 C 1.38235 * 120.00181 * 47.74282 * 20 18 9 22 22 C 1.38239 * 119.99948 * 179.79051 * 21 20 18 23 23 C 1.38234 * 119.99770 * 0.46500 * 22 21 20 24 24 C 1.50702 * 119.99651 * 179.79050 * 23 22 21 25 25 C 1.53001 * 109.47135 * 239.98032 * 24 23 22 26 26 C 1.53001 * 109.47270 * 359.97438 * 24 23 22 27 27 C 1.53002 * 109.47060 * 119.98004 * 24 23 22 28 28 C 1.38227 * 119.99988 * 359.76928 * 23 22 21 29 29 C 1.38236 * 120.00619 * 0.02562 * 28 23 22 30 30 H 1.08999 * 109.47247 * 175.02039 * 1 2 3 31 31 H 1.09000 * 109.46933 * 295.00982 * 1 2 3 32 32 H 1.08998 * 109.47376 * 55.01785 * 1 2 3 33 33 H 0.96699 * 114.00377 * 180.02562 * 6 5 4 34 34 H 0.96999 * 120.00144 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.00132 * 0.02562 * 21 20 18 36 36 H 1.07998 * 119.99684 * 180.25740 * 22 21 20 37 37 H 1.09000 * 109.46895 * 60.00013 * 25 24 23 38 38 H 1.08997 * 109.46914 * 180.02562 * 25 24 23 39 39 H 1.09002 * 109.47059 * 300.00198 * 25 24 23 40 40 H 1.08998 * 109.47168 * 59.99502 * 26 24 23 41 41 H 1.09002 * 109.47302 * 180.02562 * 26 24 23 42 42 H 1.09001 * 109.46910 * 299.99686 * 26 24 23 43 43 H 1.08999 * 109.47149 * 59.99374 * 27 24 23 44 44 H 1.08997 * 109.46943 * 180.02562 * 27 24 23 45 45 H 1.09000 * 109.47044 * 299.99664 * 27 24 23 46 46 H 1.08004 * 119.99742 * 179.97438 * 28 23 22 47 47 H 1.07998 * 120.00095 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0518 0.0000 4 6 2.2119 -1.2209 -0.0005 5 6 3.5597 -1.3820 -0.1059 6 8 4.4617 -0.3819 -0.2305 7 6 3.8787 -2.8193 -0.0631 8 8 4.9993 -3.2868 -0.1341 9 7 2.7501 -3.5395 0.0661 10 6 2.6715 -4.8950 0.1433 11 1 3.5408 -5.4711 0.4239 12 6 1.4664 -5.5421 -0.1404 13 7 0.4693 -4.8708 -0.6603 14 14 1.2772 -7.3649 0.2216 15 1 0.7614 -7.5443 1.6026 16 1 0.3229 -7.9650 -0.7449 17 1 2.5967 -8.0342 0.0952 18 6 1.6188 -2.6059 0.1161 19 1 0.9402 -2.7942 -0.7159 20 6 0.8858 -2.7492 1.4250 21 6 1.5915 -2.7723 2.6134 22 6 0.9187 -2.8994 3.8144 23 6 -0.4589 -3.0131 3.8262 24 6 -1.1919 -3.1564 5.1351 25 6 -1.9659 -4.4762 5.1443 26 6 -0.1850 -3.1478 6.2871 27 6 -2.1689 -1.9910 5.3028 28 6 -1.1641 -2.9949 2.6374 29 6 -0.4918 -2.8635 1.4368 30 1 -0.3634 -1.0238 -0.0892 31 1 -0.3633 0.4345 0.9313 32 1 -0.3634 0.5892 -0.8420 33 1 5.3781 -0.6842 -0.2931 34 1 -0.3673 -5.3202 -0.8576 35 1 2.6680 -2.6872 2.6040 36 1 1.4697 -2.9132 4.7431 37 1 -1.2698 -5.3064 5.0249 38 1 -2.4964 -4.5796 6.0909 39 1 -2.6832 -4.4825 4.3236 40 1 0.3665 -2.2077 6.2805 41 1 -0.7152 -3.2519 7.2338 42 1 0.5109 -3.9781 6.1676 43 1 -2.8861 -1.9972 4.4820 44 1 -2.6987 -2.0944 6.2497 45 1 -1.6175 -1.0508 5.2962 46 1 -2.2404 -3.0841 2.6467 47 1 -1.0428 -2.8497 0.5080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019087794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:47 Heat of formation + Delta-G solvation = -81.139931 kcal Electronic energy + Delta-G solvation = -31629.148389 eV Core-core repulsion = 27549.113324 eV Total energy + Delta-G solvation = -4080.035065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.41579 -40.52904 -39.89591 -38.76716 -37.71395 -36.57644 -35.12643 -32.88469 -31.87644 -31.17392 -30.65243 -28.17774 -28.01066 -27.46990 -26.95104 -24.44013 -23.13861 -22.79303 -22.07148 -20.12298 -19.85030 -19.51085 -18.81288 -17.73956 -17.43085 -16.75132 -16.51361 -16.16443 -15.99548 -15.79507 -15.63638 -15.58354 -15.31300 -15.06962 -14.78866 -14.43956 -14.43085 -14.24793 -14.14585 -13.96314 -13.51511 -13.29826 -13.08077 -12.99759 -12.92147 -12.90250 -12.76279 -12.56028 -12.54601 -12.46220 -12.19759 -12.11211 -11.74425 -11.51460 -11.38845 -11.27119 -11.02475 -10.45936 -10.13353 -9.71742 -9.61029 -9.25302 -8.58599 -6.13771 -0.47819 0.55577 0.67586 1.33196 1.40615 1.49483 1.63772 2.07192 2.26035 2.45316 2.85654 2.95006 3.05434 3.19771 3.67544 3.75430 3.91065 3.98169 4.09634 4.19520 4.25167 4.29310 4.43855 4.49022 4.64937 4.72270 4.73769 4.82870 4.86160 4.90393 4.94604 4.96468 5.03665 5.07923 5.09698 5.14252 5.19287 5.24220 5.29368 5.30997 5.34144 5.44251 5.53188 5.55362 5.72161 5.85294 5.90402 6.23386 6.26484 6.29699 6.73463 6.83696 6.92069 7.72151 8.40361 Molecular weight = 343.16amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.005745 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.305107 B = 4872.625721 C = 6693.138360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.416 3.584 3 O -0.513 6.513 4 C -0.303 4.303 5 C 0.145 3.855 6 O -0.429 6.429 7 C 0.374 3.626 8 O -0.636 6.636 9 N -0.371 5.371 10 C -0.328 4.328 11 H 0.086 0.914 12 C 0.031 3.969 13 N -0.834 5.834 14 Si 0.988 3.012 15 H -0.265 1.265 16 H -0.260 1.260 17 H -0.275 1.275 18 C 0.219 3.781 19 H 0.136 0.864 20 C -0.056 4.056 21 C -0.118 4.118 22 C -0.132 4.132 23 C -0.074 4.074 24 C -0.027 4.027 25 C -0.135 4.135 26 C -0.143 4.143 27 C -0.133 4.133 28 C -0.119 4.119 29 C -0.083 4.083 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.416 0.584 34 H 0.294 0.706 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.144 0.856 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 1.778 9.222 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.302 3.698 3 O -0.396 6.396 4 C -0.310 4.310 5 C 0.089 3.911 6 O -0.231 6.231 7 C 0.167 3.833 8 O -0.530 6.530 9 N -0.082 5.082 10 C -0.455 4.455 11 H 0.104 0.896 12 C -0.180 4.180 13 N -0.467 5.467 14 Si 0.810 3.190 15 H -0.190 1.190 16 H -0.184 1.184 17 H -0.200 1.200 18 C 0.116 3.884 19 H 0.153 0.847 20 C -0.056 4.056 21 C -0.137 4.137 22 C -0.150 4.150 23 C -0.074 4.074 24 C -0.027 4.027 25 C -0.192 4.192 26 C -0.200 4.200 27 C -0.190 4.190 28 C -0.137 4.137 29 C -0.101 4.101 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.272 0.728 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.146 0.854 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.162 0.838 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.710 2.322 9.127 15.819 hybrid contribution 1.558 -1.232 -0.331 2.013 sum -11.152 1.090 8.796 14.246 Atomic orbital electron populations 1.22219 0.90950 1.05749 1.05499 1.20416 0.93255 0.85480 0.70640 1.90539 1.73267 1.34713 1.41044 1.21473 0.91725 0.97878 1.19939 1.21707 0.91037 0.87981 0.90358 1.84829 1.21363 1.30537 1.86375 1.18930 0.86085 0.87259 0.91038 1.90602 1.23315 1.76403 1.62644 1.43665 1.05988 1.05801 1.52721 1.19633 0.99420 0.79484 1.46955 0.89606 1.26096 0.93989 1.04416 0.93462 1.69486 1.04481 1.39256 1.33463 0.85001 0.78738 0.76183 0.79101 1.19036 1.18364 1.19959 1.19320 0.88487 0.82098 0.98538 0.84726 1.19328 0.94295 1.00067 0.91917 1.20804 0.98291 1.00984 0.93612 1.21135 0.94873 1.01966 0.96979 1.20004 0.92769 0.98955 0.95703 1.19531 0.95340 0.97006 0.90850 1.21868 0.99527 0.95131 1.02723 1.21952 0.98753 1.01519 0.97816 1.21849 0.98171 0.96353 1.02616 1.21119 1.00505 1.00922 0.91149 1.21008 0.92403 0.97915 0.98804 0.89207 0.87844 0.87548 0.72833 0.89475 0.90266 0.85389 0.94063 0.90733 0.92026 0.92669 0.90817 0.93302 0.91826 0.90943 0.93197 0.83828 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.20 9.85 71.24 0.70 -4.49 16 2 C 0.42 16.05 6.99 26.36 0.18 16.23 16 3 O -0.51 -22.65 16.85 9.99 0.17 -22.48 16 4 C -0.30 -12.87 5.31 -19.55 -0.10 -12.97 16 5 C 0.14 6.62 7.38 24.17 0.18 6.80 16 6 O -0.43 -17.63 12.72 -70.10 -0.89 -18.52 16 7 C 0.37 19.52 7.89 86.67 0.68 20.20 16 8 O -0.64 -36.76 17.60 -4.12 -0.07 -36.84 16 9 N -0.37 -18.63 2.38 -624.06 -1.48 -20.11 16 10 C -0.33 -16.90 9.60 84.40 0.81 -16.09 16 11 H 0.09 4.74 7.86 -2.91 -0.02 4.72 16 12 C 0.03 1.41 5.17 85.18 0.44 1.85 16 13 N -0.83 -35.61 9.71 21.78 0.21 -35.40 16 14 Si 0.99 36.71 29.57 68.60 2.03 38.74 16 15 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 16 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 17 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 18 C 0.22 9.36 1.55 43.58 0.07 9.43 16 19 H 0.14 5.87 6.09 -2.39 -0.01 5.86 16 20 C -0.06 -2.11 3.49 -19.86 -0.07 -2.18 16 21 C -0.12 -4.64 9.23 22.27 0.21 -4.43 16 22 C -0.13 -4.26 8.98 22.27 0.20 -4.06 16 23 C -0.07 -2.01 4.76 -19.87 -0.09 -2.11 16 24 C -0.03 -0.55 0.85 -52.93 -0.05 -0.60 16 25 C -0.14 -2.51 8.29 71.98 0.60 -1.91 16 26 C -0.14 -2.75 7.13 71.98 0.51 -2.23 16 27 C -0.13 -2.19 8.29 71.98 0.60 -1.60 16 28 C -0.12 -3.19 8.71 22.27 0.19 -3.00 16 29 C -0.08 -2.62 7.42 22.27 0.17 -2.46 16 30 H 0.09 2.40 4.47 -2.39 -0.01 2.39 16 31 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.42 13.73 8.86 -74.06 -0.66 13.07 16 34 H 0.29 11.34 8.30 -92.71 -0.77 10.57 16 35 H 0.08 3.52 7.98 -2.91 -0.02 3.49 16 36 H 0.13 3.72 5.90 -2.91 -0.02 3.71 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.08 7.39 -2.39 -0.02 1.07 16 40 H 0.05 1.09 7.51 -2.39 -0.02 1.07 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 1.03 7.51 -2.39 -0.02 1.01 16 43 H 0.06 0.98 7.39 -2.39 -0.02 0.96 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.14 2.97 7.10 -2.91 -0.02 2.95 16 47 H 0.13 3.92 7.34 -2.91 -0.02 3.90 16 Total: -1.00 -66.35 381.70 5.54 -60.81 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: 0.36 Total: 37.41 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.22 Total: -3.62 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -1.27 Total: -55.51 kcal Atomic # 8 Polarization: -77.04 SS G_CDS: -0.80 Total: -77.83 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -66.35 5.54 -60.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019087794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.331 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds