Wall clock time and date at job start Tue Mar 31 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47464 * 2 1 4 4 C 1.50702 * 109.47264 * 120.00162 * 2 1 3 5 5 C 1.38434 * 119.81422 * 119.99302 * 4 2 1 6 6 C 1.37839 * 120.19665 * 180.02562 * 5 4 2 7 7 C 1.40038 * 119.80232 * 359.97438 * 6 5 4 8 8 C 1.46782 * 120.18991 * 179.72767 * 7 6 5 9 9 C 1.36417 * 120.00164 * 132.68786 * 8 7 6 10 10 C 1.47097 * 119.99948 * 348.80187 * 9 8 7 11 11 O 1.21595 * 120.00437 * 352.90418 * 10 9 8 12 12 O 1.34798 * 119.99839 * 172.90556 * 10 9 8 13 13 C 1.34817 * 116.99901 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99876 * 359.97438 * 13 12 10 15 15 C 1.38827 * 119.99876 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00361 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00013 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46862 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47204 * 119.99499 * 17 15 13 20 20 H 1.48498 * 109.47145 * 239.99934 * 17 15 13 21 21 C 1.47459 * 119.99900 * 168.80754 * 9 8 7 22 22 C 1.35042 * 125.28260 * 114.99869 * 21 9 8 23 23 C 1.37882 * 114.66971 * 179.97438 * 22 21 9 24 24 C 1.33681 * 115.08397 * 0.02562 * 23 22 21 25 25 S 1.75864 * 109.78686 * 359.73076 * 24 23 22 26 26 C 1.40038 * 119.62223 * 359.97438 * 7 6 5 27 27 C 1.37832 * 119.80867 * 0.02562 * 26 7 6 28 28 H 1.09005 * 109.46822 * 300.00390 * 1 2 3 29 29 H 1.09006 * 109.47327 * 60.00041 * 1 2 3 30 30 H 1.08995 * 109.47742 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46822 * 239.99610 * 2 1 3 32 32 H 1.09003 * 109.46964 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46947 * 299.99786 * 3 2 1 34 34 H 1.08996 * 109.47236 * 59.99779 * 3 2 1 35 35 H 1.08005 * 119.90300 * 359.97438 * 5 4 2 36 36 H 1.07995 * 120.09796 * 180.02562 * 6 5 4 37 37 H 1.08003 * 119.99779 * 312.68873 * 8 7 6 38 38 H 0.96993 * 120.00213 * 179.97438 * 16 15 13 39 39 H 1.07997 * 122.67295 * 359.97438 * 22 21 9 40 40 H 1.07997 * 122.46203 * 180.02562 * 23 22 21 41 41 H 1.08004 * 125.10671 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.09504 * 179.97438 * 26 7 6 43 43 H 1.07999 * 119.90633 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8278 -1.8357 1.0989 6 6 3.2912 -2.4919 2.2190 7 6 2.9554 -2.0168 3.4928 8 6 3.4393 -2.7125 4.6913 9 6 3.9998 -2.0026 5.7125 10 6 4.3454 -0.5858 5.5203 11 8 4.2529 -0.0814 4.4178 12 8 4.7649 0.1535 6.5665 13 6 5.0650 1.4450 6.3222 14 1 4.9651 1.8429 5.3232 15 6 5.5035 2.2630 7.3546 16 7 5.6256 1.7787 8.5701 17 14 5.9201 4.0522 7.0159 18 1 5.7006 4.3478 5.5773 19 1 5.0488 4.9279 7.8402 20 1 7.3425 4.3032 7.3610 21 6 4.2592 -2.6555 7.0089 22 6 5.4803 -2.8667 7.5455 23 6 5.4690 -3.4972 8.7716 24 6 4.2550 -3.8028 9.2405 25 16 3.0256 -3.2736 8.0999 26 6 2.1511 -0.8772 3.6166 27 6 1.6964 -0.2333 2.4860 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.0855 -2.2010 0.1157 36 1 3.9121 -3.3694 2.1145 37 1 3.3516 -3.7864 4.7647 38 1 5.9324 2.3502 9.2913 39 1 6.3933 -2.5657 7.0533 40 1 6.3744 -3.7273 9.3135 41 1 4.0585 -4.2967 10.1807 42 1 1.8871 -0.5044 4.5953 43 1 1.0756 0.6455 2.5796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019397315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:01 Heat of formation + Delta-G solvation = -8.114552 kcal Electronic energy + Delta-G solvation = -26697.154477 eV Core-core repulsion = 22992.631717 eV Total energy + Delta-G solvation = -3704.522760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.108 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -39.58951 -38.70248 -37.30399 -36.01292 -34.79705 -33.18647 -32.18590 -30.53611 -29.93702 -27.38714 -27.09682 -25.72818 -24.19721 -22.96191 -22.53563 -21.73814 -19.92483 -19.19290 -18.58696 -17.81346 -17.39171 -16.28126 -15.67164 -15.11744 -15.06181 -14.83020 -14.39520 -14.38171 -13.92691 -13.77518 -13.49451 -13.30218 -13.16180 -12.91472 -12.61610 -12.44988 -12.26389 -12.25507 -11.97736 -11.83412 -11.68165 -11.48390 -11.25550 -11.13617 -11.05294 -10.55667 -10.53997 -10.44291 -10.43512 -10.38585 -9.82878 -9.46462 -8.93183 -8.63372 -8.37765 -8.31117 -8.09256 -7.48256 -6.46573 -4.07205 0.86569 1.39042 1.90947 1.95829 2.22466 2.45882 3.10749 3.16125 3.19616 3.23928 3.93585 4.05003 4.19822 4.63413 4.78984 4.88734 4.94650 5.13690 5.25185 5.33887 5.35289 5.37105 5.45536 5.52504 5.64481 5.74077 5.80044 5.82598 5.87916 5.94761 5.97915 6.00447 6.12442 6.25845 6.31481 6.33966 6.41499 6.47329 6.55076 6.68865 6.82078 6.87483 6.91650 6.99379 7.10166 7.36261 7.41983 7.91217 8.72541 9.01363 9.86535 10.70176 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.008070 B = 0.004429 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3468.701753 B = 6320.296795 C = 9164.530392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.074 4.074 5 C -0.132 4.132 6 C -0.101 4.101 7 C -0.051 4.051 8 C -0.047 4.047 9 C -0.052 4.052 10 C 0.423 3.577 11 O -0.534 6.534 12 O -0.196 6.196 13 C -0.370 4.370 14 H 0.097 0.903 15 C 0.042 3.958 16 N -0.851 5.851 17 Si 0.940 3.060 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.276 1.276 21 C -0.126 4.126 22 C -0.110 4.110 23 C -0.124 4.124 24 C -0.224 4.224 25 S 0.103 5.897 26 C -0.038 4.038 27 C -0.120 4.120 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.270 0.730 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.160 0.840 42 H 0.113 0.887 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -9.548 -8.015 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.074 4.074 5 C -0.150 4.150 6 C -0.120 4.120 7 C -0.051 4.051 8 C -0.069 4.069 9 C -0.055 4.055 10 C 0.271 3.729 11 O -0.433 6.433 12 O -0.103 6.103 13 C -0.446 4.446 14 H 0.115 0.885 15 C -0.163 4.163 16 N -0.487 5.487 17 Si 0.764 3.236 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.243 4.243 22 C -0.140 4.140 23 C -0.155 4.155 24 C -0.360 4.360 25 S 0.369 5.631 26 C -0.056 4.056 27 C -0.138 4.138 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.153 0.847 38 H 0.080 0.920 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.178 0.822 42 H 0.131 0.869 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.216 -9.393 -7.993 14.820 hybrid contribution 2.043 1.046 0.266 2.311 sum -6.173 -8.347 -7.727 12.941 Atomic orbital electron populations 1.21851 0.94703 1.01741 1.01700 1.20094 0.95620 0.96087 0.95498 1.21854 1.01549 0.95137 1.01615 1.19803 0.97796 0.95575 0.94261 1.20717 0.99858 0.96541 0.97878 1.21076 0.99541 0.99821 0.91518 1.18673 0.98284 0.95929 0.92253 1.22350 0.94795 0.98352 0.91407 1.19358 1.02955 0.91792 0.91442 1.20612 0.81491 0.86731 0.84110 1.90746 1.54540 1.72456 1.25563 1.83978 1.67761 1.23129 1.35390 1.21360 1.43821 0.82206 0.97195 0.88494 1.25374 0.96357 1.00218 0.94394 1.70005 1.42038 1.36544 1.00132 0.85652 0.78357 0.80438 0.79109 1.18848 1.20099 1.20104 1.22640 0.95971 1.06922 0.98719 1.20338 0.97640 1.00331 0.95718 1.20010 0.97949 1.01182 0.96341 1.25573 0.95973 1.10057 1.04351 1.84009 1.10408 1.56211 1.12441 1.21106 0.94137 0.92154 0.98245 1.20682 1.01546 0.99837 0.91764 0.92402 0.92766 0.92695 0.90930 0.92394 0.92853 0.92279 0.86810 0.86516 0.84719 0.92026 0.84332 0.84498 0.82236 0.86894 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.00 37.15 0.33 -1.12 16 2 C -0.05 -0.64 3.09 -91.77 -0.28 -0.92 16 3 C -0.14 -1.72 9.00 37.16 0.33 -1.38 16 4 C -0.07 -1.09 4.80 -104.47 -0.50 -1.59 16 5 C -0.13 -1.90 9.65 -39.66 -0.38 -2.28 16 6 C -0.10 -1.56 9.80 -39.05 -0.38 -1.95 16 7 C -0.05 -0.90 4.39 -105.09 -0.46 -1.36 16 8 C -0.05 -0.80 9.48 -36.79 -0.35 -1.15 16 9 C -0.05 -1.05 5.70 -103.21 -0.59 -1.64 16 10 C 0.42 10.60 7.01 34.32 0.24 10.84 16 11 O -0.53 -13.93 11.79 -19.34 -0.23 -14.16 16 12 O -0.20 -5.63 9.31 -21.71 -0.20 -5.83 16 13 C -0.37 -10.82 9.65 30.95 0.30 -10.52 16 14 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 15 C 0.04 1.17 5.50 -17.52 -0.10 1.07 16 16 N -0.85 -24.70 13.67 55.49 0.76 -23.95 16 17 Si 0.94 21.18 29.55 -169.99 -5.02 16.15 16 18 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.13 -2.37 5.50 -36.96 -0.20 -2.57 16 22 C -0.11 -2.02 10.11 -40.85 -0.41 -2.43 16 23 C -0.12 -1.95 10.16 -41.31 -0.42 -2.37 16 24 C -0.22 -3.26 11.23 29.13 0.33 -2.93 16 25 S 0.10 1.64 23.31 -107.50 -2.51 -0.87 16 26 C -0.04 -0.70 6.80 -39.06 -0.27 -0.97 16 27 C -0.12 -1.98 8.68 -39.65 -0.34 -2.33 16 28 H 0.06 0.61 7.37 -51.93 -0.38 0.22 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.75 7.37 -51.93 -0.38 0.36 16 35 H 0.11 1.35 7.93 -52.48 -0.42 0.93 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.14 2.56 8.06 -52.49 -0.42 2.14 16 40 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.16 1.82 8.06 -52.48 -0.42 1.39 16 42 H 0.11 2.24 7.42 -52.49 -0.39 1.85 16 43 H 0.11 1.74 7.07 -52.49 -0.37 1.37 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -32.52 381.53 -10.26 -42.78 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.65 Total: 5.73 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -3.15 Total: -25.61 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.76 Total: -23.95 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.43 Total: -19.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.51 Total: -0.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.52 -10.26 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019397315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.662 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds