Wall clock time and date at job start Tue Mar 31 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47034 * 300.00168 * 3 2 1 6 6 H 1.48505 * 109.46948 * 60.00149 * 3 2 1 7 7 C 1.37873 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00563 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99771 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47306 * 180.70928 * 9 7 2 11 11 C 1.46901 * 111.00062 * 164.43894 * 10 9 7 12 12 N 1.46503 * 109.47005 * 279.32118 * 11 10 9 13 13 C 1.34520 * 124.46041 * 269.97690 * 12 11 10 14 14 O 1.21450 * 125.71329 * 0.03663 * 13 12 11 15 15 C 1.47820 * 108.58164 * 180.02562 * 13 12 11 16 16 C 1.38562 * 134.29378 * 180.02562 * 15 13 12 17 17 C 1.38614 * 119.71733 * 180.20892 * 16 15 13 18 18 C 1.38227 * 120.45570 * 359.50944 * 17 16 15 19 19 C 1.38614 * 120.46349 * 0.48404 * 18 17 16 20 20 C 1.38564 * 119.71881 * 359.76137 * 19 18 17 21 21 C 1.34528 * 124.46157 * 89.99882 * 12 11 10 22 22 O 1.21447 * 125.70691 * 0.02562 * 21 12 11 23 23 C 1.46895 * 111.00240 * 288.39421 * 10 9 7 24 24 C 1.53003 * 109.46976 * 285.36746 * 23 10 9 25 25 C 1.53009 * 109.46784 * 180.02562 * 24 23 10 26 26 C 1.52998 * 109.47114 * 59.99786 * 25 24 23 27 27 C 1.52991 * 109.47359 * 300.00083 * 26 25 24 28 28 C 1.52996 * 109.47231 * 59.99986 * 27 26 25 29 29 H 0.96994 * 120.00192 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47068 * 60.71203 * 9 7 2 31 31 H 1.09003 * 109.47353 * 300.71428 * 9 7 2 32 32 H 1.09000 * 109.47327 * 159.32393 * 11 10 9 33 33 H 1.08998 * 109.47275 * 39.31599 * 11 10 9 34 34 H 1.08000 * 120.14500 * 359.92621 * 16 15 13 35 35 H 1.08003 * 119.77430 * 179.72858 * 17 16 15 36 36 H 1.07999 * 119.77196 * 180.24332 * 18 17 16 37 37 H 1.07993 * 120.14097 * 179.74860 * 19 18 17 38 38 H 1.09000 * 109.47289 * 45.36636 * 23 10 9 39 39 H 1.08996 * 109.47410 * 299.99789 * 24 23 10 40 40 H 1.08996 * 109.47122 * 60.00109 * 24 23 10 41 41 H 1.09004 * 109.46664 * 300.00137 * 25 24 23 42 42 H 1.08995 * 109.47066 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.46638 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.46544 * 60.00616 * 26 25 24 45 45 H 1.09009 * 109.47064 * 300.00018 * 27 26 25 46 46 H 1.09006 * 109.47105 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.47147 * 180.02562 * 28 27 26 48 48 H 1.09000 * 109.47287 * 60.00176 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0183 11 6 1.5396 -4.8719 0.3869 12 7 1.3868 -4.9348 1.8426 13 6 2.2943 -5.4672 2.6809 14 8 3.3540 -5.9636 2.3561 15 6 1.7859 -5.3466 4.0636 16 6 2.2738 -5.7085 5.3090 17 6 1.5218 -5.4479 6.4439 18 6 0.2942 -4.8208 6.3422 19 6 -0.2065 -4.4529 5.1031 20 6 0.5319 -4.7115 3.9595 21 6 0.3204 -4.4682 2.5169 22 8 -0.6535 -3.9366 2.0230 23 6 2.8912 -3.7429 -1.2747 24 6 1.9332 -4.3491 -2.3022 25 6 2.6475 -4.4822 -3.6488 26 6 3.8681 -5.3911 -3.4910 27 6 4.8259 -4.7849 -2.4635 28 6 4.1118 -4.6518 -1.1170 29 1 -0.4850 0.8400 0.0004 30 1 0.6345 -2.5626 -0.8960 31 1 0.6146 -2.5512 0.8838 32 1 2.1413 -5.7153 0.0480 33 1 0.5573 -4.9140 -0.0836 34 1 3.2338 -6.1957 5.3947 35 1 1.8993 -5.7336 7.4146 36 1 -0.2807 -4.6196 7.2340 37 1 -1.1681 -3.9669 5.0294 38 1 3.2124 -2.7581 -1.6141 39 1 1.6120 -5.3338 -1.9629 40 1 1.0635 -3.7018 -2.4142 41 1 2.9691 -3.4976 -3.9884 42 1 1.9650 -4.9137 -4.3810 43 1 4.3766 -5.4862 -4.4505 44 1 3.5464 -6.3757 -3.1515 45 1 5.1475 -3.8003 -2.8032 46 1 5.6958 -5.4322 -2.3515 47 1 4.7941 -4.2195 -0.3851 48 1 3.7902 -5.6363 -0.7773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020230652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:02 Heat of formation + Delta-G solvation = -18.774310 kcal Electronic energy + Delta-G solvation = -30977.742425 eV Core-core repulsion = 26998.130398 eV Total energy + Delta-G solvation = -3979.612027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.00954 -39.05441 -38.24545 -38.20851 -35.68434 -34.89390 -32.57538 -31.41939 -31.17560 -30.40929 -28.84918 -27.43741 -25.08087 -24.87688 -22.83466 -22.74419 -22.02648 -21.89095 -20.35587 -19.84754 -18.80609 -17.60197 -16.97524 -16.56764 -16.24680 -15.96723 -15.28233 -15.08387 -14.85961 -14.54192 -14.30832 -14.06660 -14.02821 -13.86705 -13.76847 -13.59936 -13.27639 -12.81998 -12.67159 -12.41744 -12.38346 -12.04045 -11.91733 -11.72091 -11.67634 -11.14766 -10.84253 -10.77134 -10.71642 -10.54653 -10.36751 -10.25248 -9.99334 -9.95391 -9.87209 -9.64325 -9.48140 -9.27532 -9.22442 -9.07150 -8.38453 -7.37690 -5.97531 -3.99414 0.18158 0.93050 2.17553 2.64960 3.31943 3.32300 3.39449 3.44501 3.59702 3.78332 4.42893 4.49303 4.59087 4.74180 4.80690 4.97891 5.03155 5.12760 5.17051 5.23605 5.30647 5.36951 5.44174 5.53165 5.59703 5.61835 5.68837 5.82386 5.84083 5.90183 5.92910 5.96418 5.98446 6.07078 6.09301 6.13359 6.31538 6.33458 6.45228 6.50257 6.51581 6.58569 6.80120 6.88087 7.01959 7.27965 7.39166 7.55752 7.79445 7.93292 8.14562 8.20202 8.50291 9.07630 9.63736 11.12374 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.008328 B = 0.004793 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.180347 B = 5840.764599 C = 8026.538947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.185 3.815 10 N -0.543 5.543 11 C 0.275 3.725 12 N -0.560 5.560 13 C 0.580 3.420 14 O -0.468 6.468 15 C -0.136 4.136 16 C -0.050 4.050 17 C -0.104 4.104 18 C -0.100 4.100 19 C -0.049 4.049 20 C -0.129 4.129 21 C 0.568 3.432 22 O -0.442 6.442 23 C 0.101 3.899 24 C -0.152 4.152 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.110 4.110 29 H 0.260 0.740 30 H -0.002 1.002 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 -14.129 7.102 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.060 3.940 10 N -0.267 5.267 11 C 0.065 3.935 12 N -0.302 5.302 13 C 0.369 3.631 14 O -0.339 6.339 15 C -0.140 4.140 16 C -0.069 4.069 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.068 4.068 20 C -0.133 4.133 21 C 0.355 3.645 22 O -0.312 6.312 23 C -0.008 4.008 24 C -0.191 4.191 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.148 4.148 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.119 -13.859 6.901 15.793 hybrid contribution -0.247 1.010 -0.570 1.186 sum 2.872 -12.848 6.331 14.609 Atomic orbital electron populations 1.69992 1.05919 1.26484 1.50752 1.24968 0.94809 0.99115 0.95592 0.86517 0.80139 0.83751 0.77483 1.19700 1.21106 1.21095 1.21139 0.93387 0.89835 1.50130 0.91995 1.19988 0.89871 0.86896 0.97227 1.61992 1.32087 1.03103 1.29528 1.22067 0.99455 0.95946 0.75994 1.46677 1.19240 1.54411 1.09918 1.18241 0.82887 0.76544 0.85440 1.90750 1.20239 1.40909 1.82048 1.20728 0.96377 1.02350 0.94554 1.20749 0.99709 0.96776 0.89658 1.21384 0.94451 0.97870 0.98481 1.21403 0.95993 0.97126 0.97309 1.20814 0.99641 0.96295 0.90060 1.20736 0.96458 1.01600 0.94463 1.18336 0.82470 0.77069 0.86581 1.90866 1.29381 1.35835 1.75087 1.21585 0.92601 0.99997 0.86647 1.22285 1.00069 1.00572 0.96213 1.21444 0.96654 0.99953 0.97033 1.21535 0.96464 0.98882 0.98608 1.21509 0.97640 1.00835 0.95474 1.21600 0.97315 0.99401 0.96460 0.93059 0.98376 0.93927 0.88589 0.91535 0.84322 0.84454 0.84403 0.84135 0.88458 0.92865 0.91156 0.91803 0.92660 0.92614 0.92474 0.91951 0.92465 0.91384 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.51 -14.41 8.40 -34.44 -0.29 -14.70 16 8 H 0.06 1.77 7.59 -52.48 -0.40 1.37 16 9 C 0.18 4.85 4.49 -4.97 -0.02 4.83 16 10 N -0.54 -11.75 4.47 -231.96 -1.04 -12.78 16 11 C 0.28 5.22 4.00 -63.31 -0.25 4.97 16 12 N -0.56 -10.51 2.83 -120.90 -0.34 -10.85 16 13 C 0.58 10.14 8.02 -12.46 -0.10 10.04 16 14 O -0.47 -8.78 17.68 5.41 0.10 -8.69 16 15 C -0.14 -1.99 6.40 -104.83 -0.67 -2.66 16 16 C -0.05 -0.54 10.09 -39.32 -0.40 -0.94 16 17 C -0.10 -0.87 10.04 -39.45 -0.40 -1.26 16 18 C -0.10 -0.87 10.04 -39.45 -0.40 -1.27 16 19 C -0.05 -0.59 10.09 -39.32 -0.40 -0.98 16 20 C -0.13 -1.97 6.41 -104.83 -0.67 -2.65 16 21 C 0.57 10.87 7.31 -12.46 -0.09 10.78 16 22 O -0.44 -9.88 15.96 5.41 0.09 -9.79 16 23 C 0.10 1.89 2.04 -67.71 -0.14 1.76 16 24 C -0.15 -2.54 4.53 -26.72 -0.12 -2.66 16 25 C -0.11 -1.58 5.92 -26.73 -0.16 -1.73 16 26 C -0.12 -1.46 5.92 -26.74 -0.16 -1.62 16 27 C -0.12 -1.57 5.92 -26.74 -0.16 -1.73 16 28 C -0.11 -1.78 5.25 -26.73 -0.14 -1.92 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.00 -0.04 6.53 -51.93 -0.34 -0.38 16 31 H 0.04 1.23 5.28 -51.93 -0.27 0.96 16 32 H 0.10 1.64 5.53 -51.93 -0.29 1.35 16 33 H 0.07 1.28 7.39 -51.93 -0.38 0.90 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.10 2.07 7.02 -51.93 -0.36 1.71 16 39 H 0.05 0.82 6.58 -51.93 -0.34 0.48 16 40 H 0.07 1.34 6.72 -51.93 -0.35 0.99 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.06 0.89 6.47 -51.93 -0.34 0.55 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -33.71 382.06 -11.24 -44.95 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.86 Total: 0.91 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -4.66 Total: -0.21 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.64 Total: -49.99 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.18 Total: -18.48 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.71 -11.24 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020230652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.178 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds