Wall clock time and date at job start Tue Mar 31 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47034 * 300.00168 * 3 2 1 6 6 H 1.48505 * 109.46948 * 60.00149 * 3 2 1 7 7 C 1.37873 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00563 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99771 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47306 * 180.70928 * 9 7 2 11 11 C 1.46901 * 111.00062 * 164.43894 * 10 9 7 12 12 N 1.46503 * 109.47005 * 279.32118 * 11 10 9 13 13 C 1.34520 * 124.46041 * 269.97690 * 12 11 10 14 14 O 1.21450 * 125.71329 * 0.03663 * 13 12 11 15 15 C 1.47820 * 108.58164 * 180.02562 * 13 12 11 16 16 C 1.38562 * 134.29378 * 180.02562 * 15 13 12 17 17 C 1.38614 * 119.71733 * 180.20892 * 16 15 13 18 18 C 1.38227 * 120.45570 * 359.50944 * 17 16 15 19 19 C 1.38614 * 120.46349 * 0.48404 * 18 17 16 20 20 C 1.38564 * 119.71881 * 359.76137 * 19 18 17 21 21 C 1.34528 * 124.46157 * 89.99882 * 12 11 10 22 22 O 1.21447 * 125.70691 * 0.02562 * 21 12 11 23 23 C 1.46895 * 111.00240 * 288.39421 * 10 9 7 24 24 C 1.53003 * 109.46976 * 285.36746 * 23 10 9 25 25 C 1.53009 * 109.46784 * 180.02562 * 24 23 10 26 26 C 1.52998 * 109.47114 * 59.99786 * 25 24 23 27 27 C 1.52991 * 109.47359 * 300.00083 * 26 25 24 28 28 C 1.52996 * 109.47231 * 59.99986 * 27 26 25 29 29 H 0.96994 * 120.00192 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47068 * 60.71203 * 9 7 2 31 31 H 1.09003 * 109.47353 * 300.71428 * 9 7 2 32 32 H 1.09000 * 109.47327 * 159.32393 * 11 10 9 33 33 H 1.08998 * 109.47275 * 39.31599 * 11 10 9 34 34 H 1.08000 * 120.14500 * 359.92621 * 16 15 13 35 35 H 1.08003 * 119.77430 * 179.72858 * 17 16 15 36 36 H 1.07999 * 119.77196 * 180.24332 * 18 17 16 37 37 H 1.07993 * 120.14097 * 179.74860 * 19 18 17 38 38 H 1.09000 * 109.47289 * 45.36636 * 23 10 9 39 39 H 1.08996 * 109.47410 * 299.99789 * 24 23 10 40 40 H 1.08996 * 109.47122 * 60.00109 * 24 23 10 41 41 H 1.09004 * 109.46664 * 300.00137 * 25 24 23 42 42 H 1.08995 * 109.47066 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.46638 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.46544 * 60.00616 * 26 25 24 45 45 H 1.09009 * 109.47064 * 300.00018 * 27 26 25 46 46 H 1.09006 * 109.47105 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.47147 * 180.02562 * 28 27 26 48 48 H 1.09000 * 109.47287 * 60.00176 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0183 11 6 1.5396 -4.8719 0.3869 12 7 1.3868 -4.9348 1.8426 13 6 2.2943 -5.4672 2.6809 14 8 3.3540 -5.9636 2.3561 15 6 1.7859 -5.3466 4.0636 16 6 2.2738 -5.7085 5.3090 17 6 1.5218 -5.4479 6.4439 18 6 0.2942 -4.8208 6.3422 19 6 -0.2065 -4.4529 5.1031 20 6 0.5319 -4.7115 3.9595 21 6 0.3204 -4.4682 2.5169 22 8 -0.6535 -3.9366 2.0230 23 6 2.8912 -3.7429 -1.2747 24 6 1.9332 -4.3491 -2.3022 25 6 2.6475 -4.4822 -3.6488 26 6 3.8681 -5.3911 -3.4910 27 6 4.8259 -4.7849 -2.4635 28 6 4.1118 -4.6518 -1.1170 29 1 -0.4850 0.8400 0.0004 30 1 0.6345 -2.5626 -0.8960 31 1 0.6146 -2.5512 0.8838 32 1 2.1413 -5.7153 0.0480 33 1 0.5573 -4.9140 -0.0836 34 1 3.2338 -6.1957 5.3947 35 1 1.8993 -5.7336 7.4146 36 1 -0.2807 -4.6196 7.2340 37 1 -1.1681 -3.9669 5.0294 38 1 3.2124 -2.7581 -1.6141 39 1 1.6120 -5.3338 -1.9629 40 1 1.0635 -3.7018 -2.4142 41 1 2.9691 -3.4976 -3.9884 42 1 1.9650 -4.9137 -4.3810 43 1 4.3766 -5.4862 -4.4505 44 1 3.5464 -6.3757 -3.1515 45 1 5.1475 -3.8003 -2.8032 46 1 5.6958 -5.4322 -2.3515 47 1 4.7941 -4.2195 -0.3851 48 1 3.7902 -5.6363 -0.7773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020230652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:01 Heat of formation + Delta-G solvation = -40.338101 kcal Electronic energy + Delta-G solvation = -30978.677501 eV Core-core repulsion = 26998.130398 eV Total energy + Delta-G solvation = -3980.547103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.33011 -40.46583 -39.72193 -39.28794 -37.17299 -36.39773 -34.68585 -32.60201 -32.07957 -31.69128 -30.46993 -29.12209 -26.73710 -26.13351 -24.53839 -23.96186 -23.34398 -23.08752 -21.80024 -21.09462 -20.24076 -18.83779 -18.42094 -18.35974 -17.85880 -17.28732 -16.75246 -16.62653 -16.35779 -15.83126 -15.46593 -15.41134 -15.33083 -15.20481 -15.10215 -15.00580 -14.63005 -14.50433 -14.06648 -13.88691 -13.67158 -13.35356 -13.20167 -13.10948 -13.00676 -12.71617 -12.61011 -12.53758 -12.14197 -12.03602 -12.00018 -11.58236 -11.52882 -11.47554 -11.33904 -11.18937 -11.02562 -10.90013 -10.61134 -10.17736 -10.15860 -9.18097 -8.22685 -6.33940 -0.95116 0.03293 1.04791 1.27271 1.33582 1.34446 1.48271 1.92560 2.34847 2.61107 2.70330 3.06275 3.12118 3.29102 3.64823 3.71415 3.83602 3.86587 4.01104 4.09097 4.10133 4.21876 4.23747 4.27446 4.32766 4.42669 4.50215 4.51919 4.60524 4.64937 4.72707 4.87195 4.88078 4.99242 5.02078 5.07913 5.15995 5.22252 5.24565 5.26754 5.29067 5.29740 5.35890 5.49209 5.52629 5.60599 5.64835 5.75353 5.98853 6.17056 6.23719 6.41626 6.64334 6.80902 7.34512 8.87793 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.008328 B = 0.004793 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.180347 B = 5840.764599 C = 8026.538947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.207 3.793 10 N -0.551 5.551 11 C 0.279 3.721 12 N -0.572 5.572 13 C 0.576 3.424 14 O -0.488 6.488 15 C -0.157 4.157 16 C -0.043 4.043 17 C -0.080 4.080 18 C -0.081 4.081 19 C -0.053 4.053 20 C -0.161 4.161 21 C 0.559 3.441 22 O -0.496 6.496 23 C 0.099 3.901 24 C -0.145 4.145 25 C -0.109 4.109 26 C -0.111 4.111 27 C -0.112 4.112 28 C -0.099 4.099 29 H 0.263 0.737 30 H -0.033 1.033 31 H 0.012 0.988 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.161 0.839 35 H 0.189 0.811 36 H 0.183 0.817 37 H 0.144 0.856 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 -15.395 9.552 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.074 0.926 9 C 0.081 3.919 10 N -0.275 5.275 11 C 0.069 3.931 12 N -0.313 5.313 13 C 0.367 3.633 14 O -0.361 6.361 15 C -0.160 4.160 16 C -0.061 4.061 17 C -0.097 4.097 18 C -0.099 4.099 19 C -0.072 4.072 20 C -0.165 4.165 21 C 0.349 3.651 22 O -0.370 6.370 23 C -0.010 4.010 24 C -0.184 4.184 25 C -0.147 4.147 26 C -0.148 4.148 27 C -0.150 4.150 28 C -0.137 4.137 29 H 0.072 0.928 30 H -0.015 1.015 31 H 0.031 0.969 32 H 0.135 0.865 33 H 0.071 0.929 34 H 0.179 0.821 35 H 0.206 0.794 36 H 0.201 0.799 37 H 0.162 0.838 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.068 0.932 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.198 -15.157 9.362 18.558 hybrid contribution -0.916 1.337 -1.183 2.007 sum 4.283 -13.819 8.179 16.619 Atomic orbital electron populations 1.70140 1.07703 1.27655 1.51544 1.25906 0.95691 1.03091 0.94872 0.85377 0.78893 0.78716 0.77908 1.18870 1.20014 1.20332 1.21395 0.93189 0.91139 1.50211 0.92551 1.19503 0.89790 0.88367 0.94236 1.61954 1.30960 1.03106 1.31497 1.22009 0.98875 0.95220 0.76987 1.46800 1.19958 1.54730 1.09852 1.18762 0.82251 0.75525 0.86741 1.90712 1.20822 1.41894 1.82722 1.20606 0.96356 1.04919 0.94154 1.21203 1.00713 0.95550 0.88637 1.21990 0.93258 0.95034 0.99459 1.21941 0.96211 0.94755 0.96991 1.21152 0.99672 0.96010 0.90377 1.20571 0.98235 1.04923 0.92722 1.19129 0.81568 0.75649 0.88718 1.90813 1.31210 1.38492 1.76450 1.21625 0.94006 0.99396 0.85931 1.22173 0.98546 1.00025 0.97662 1.21446 0.97713 1.00355 0.95229 1.21514 0.95228 0.98498 0.99563 1.21506 0.98352 1.01429 0.93713 1.21501 0.95618 0.98378 0.98171 0.92790 1.01525 0.96947 0.86506 0.92862 0.82128 0.79426 0.79947 0.83820 0.91596 0.91627 0.94729 0.92678 0.90858 0.89951 0.91414 0.92342 0.90055 0.93155 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.36 13.29 21.45 0.28 -59.08 16 2 C 0.00 0.15 5.46 84.65 0.46 0.62 16 3 Si 0.97 46.64 29.54 68.60 2.03 48.67 16 4 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.52 -31.49 8.40 25.60 0.21 -31.27 16 8 H 0.06 3.39 7.59 -2.91 -0.02 3.36 16 9 C 0.21 11.88 4.49 85.56 0.38 12.27 16 10 N -0.55 -25.81 4.47 -887.79 -3.97 -29.78 16 11 C 0.28 11.50 4.00 170.80 0.68 12.19 16 12 N -0.57 -23.18 2.83 -773.34 -2.19 -25.37 16 13 C 0.58 20.98 8.02 86.82 0.70 21.67 16 14 O -0.49 -18.73 17.68 -3.56 -0.06 -18.79 16 15 C -0.16 -4.54 6.40 -20.00 -0.13 -4.66 16 16 C -0.04 -0.78 10.09 22.44 0.23 -0.56 16 17 C -0.08 -0.89 10.04 22.36 0.22 -0.67 16 18 C -0.08 -1.05 10.04 22.36 0.22 -0.82 16 19 C -0.05 -1.21 10.09 22.44 0.23 -0.98 16 20 C -0.16 -5.09 6.41 -20.00 -0.13 -5.22 16 21 C 0.56 23.38 7.31 86.82 0.63 24.02 16 22 O -0.50 -24.66 15.96 -3.55 -0.06 -24.72 16 23 C 0.10 3.97 2.04 44.92 0.09 4.06 16 24 C -0.14 -5.14 4.53 30.60 0.14 -5.01 16 25 C -0.11 -3.03 5.92 30.60 0.18 -2.85 16 26 C -0.11 -2.51 5.92 30.59 0.18 -2.33 16 27 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 28 C -0.10 -3.26 5.25 30.59 0.16 -3.09 16 29 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 30 H -0.03 -2.05 6.53 -2.38 -0.02 -2.06 16 31 H 0.01 0.79 5.28 -2.39 -0.01 0.78 16 32 H 0.12 4.21 5.53 -2.39 -0.01 4.20 16 33 H 0.05 2.30 7.39 -2.39 -0.02 2.28 16 34 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 36 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.07 3.04 7.02 -2.39 -0.02 3.02 16 39 H 0.07 2.13 6.58 -2.39 -0.02 2.11 16 40 H 0.03 1.45 6.72 -2.39 -0.02 1.43 16 41 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.06 1.93 6.47 -2.39 -0.02 1.91 16 Total: -1.00 -82.28 382.06 1.67 -80.61 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.98 Total: 13.78 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 4.66 Total: 14.67 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -5.87 Total: -114.22 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.12 Total: -43.51 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -82.28 1.67 -80.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020230652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.275 kcal (2) G-P(sol) polarization free energy of solvation -82.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds