Wall clock time and date at job start Tue Mar 31 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46956 * 2 1 4 4 H 1.08995 * 109.47503 * 304.99993 * 3 2 1 5 5 O 1.42900 * 109.46792 * 65.00456 * 3 2 1 6 6 C 1.35946 * 116.99562 * 264.77111 * 5 3 2 7 7 C 1.38702 * 120.03298 * 359.10372 * 6 5 3 8 8 C 1.38156 * 119.97013 * 179.74533 * 7 6 5 9 9 C 1.38453 * 120.02861 * 0.53140 * 8 7 6 10 10 F 1.35100 * 119.96900 * 179.72367 * 9 8 7 11 11 C 1.38457 * 120.06209 * 359.74388 * 9 8 7 12 12 C 1.38153 * 120.02701 * 359.97438 * 11 9 8 13 13 C 1.50705 * 109.46872 * 185.00021 * 3 2 1 14 14 O 1.21284 * 119.99694 * 245.00320 * 13 3 2 15 15 N 1.34776 * 119.99891 * 65.00390 * 13 3 2 16 16 C 1.39240 * 119.99950 * 175.28774 * 15 13 3 17 17 C 1.39487 * 119.83242 * 36.03047 * 16 15 13 18 18 C 1.36367 * 120.16772 * 179.72908 * 17 16 15 19 19 C 1.40874 * 119.82757 * 0.27074 * 18 17 16 20 20 C 1.41149 * 120.16148 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00164 * 209.58866 * 20 19 18 22 22 C 1.39902 * 120.00631 * 29.58583 * 20 19 18 23 23 N 1.30874 * 119.99729 * 10.41582 * 22 20 19 24 24 Si 1.86796 * 120.00687 * 190.41811 * 22 20 19 25 25 H 1.48495 * 109.47059 * 59.99568 * 24 22 20 26 26 H 1.48501 * 109.47336 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46901 * 300.00212 * 24 22 20 28 28 C 1.40872 * 119.67305 * 0.02562 * 19 18 17 29 29 C 1.36370 * 119.82730 * 359.97438 * 28 19 18 30 30 H 1.09000 * 109.47164 * 60.00165 * 1 2 3 31 31 H 1.08999 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46927 * 299.99364 * 1 2 3 33 33 H 1.09002 * 109.46549 * 240.00287 * 2 1 3 34 34 H 1.08998 * 109.47013 * 120.00600 * 2 1 3 35 35 H 1.07993 * 120.01501 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.98518 * 180.25309 * 8 7 6 37 37 H 1.07995 * 119.98506 * 179.97438 * 11 9 8 38 38 H 1.08002 * 120.01351 * 179.97438 * 12 11 9 39 39 H 0.96996 * 119.99755 * 355.28469 * 15 13 3 40 40 H 1.07997 * 119.91591 * 359.97438 * 17 16 15 41 41 H 1.08005 * 120.08646 * 180.29658 * 18 17 16 42 42 H 0.96994 * 120.00507 * 180.02562 * 23 22 20 43 43 H 1.07998 * 120.08564 * 180.02562 * 28 19 18 44 44 H 1.08001 * 119.91464 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0812 1.2211 6 6 0.5173 2.8144 1.2054 7 6 -0.2160 2.9316 0.0339 8 6 -1.3818 3.6727 0.0207 9 6 -1.8125 4.3074 1.1733 10 9 -2.9499 5.0364 1.1576 11 6 -1.0785 4.1959 2.3420 12 6 0.0846 3.4507 2.3595 13 6 3.5420 1.4443 -0.1238 14 8 4.2250 1.8610 0.7876 15 7 4.1260 0.9828 -1.2474 16 6 5.5067 1.0746 -1.4025 17 6 6.3418 0.9047 -0.2982 18 6 7.6952 0.9877 -0.4434 19 6 8.2491 1.2514 -1.7116 20 6 9.6489 1.3383 -1.8699 21 1 10.0673 1.9718 -2.6381 22 6 10.4948 0.6038 -1.0318 23 7 9.9976 -0.3136 -0.2418 24 14 12.3336 0.9323 -1.0402 25 1 12.5859 2.3444 -0.6562 26 1 13.0025 0.0280 -0.0708 27 1 12.8743 0.6854 -2.4012 28 6 7.3989 1.4279 -2.8208 29 6 6.0474 1.3420 -2.6601 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.1219 2.4401 -0.8664 36 1 -1.9552 3.7608 -0.8904 37 1 -1.4154 4.6918 3.2403 38 1 0.6572 3.3643 3.2711 39 1 3.5845 0.5867 -1.9479 40 1 5.9157 0.7031 0.6734 41 1 8.3408 0.8513 0.4116 42 1 10.5839 -0.8226 0.3396 43 1 7.8163 1.6299 -3.7962 44 1 5.3943 1.4767 -3.5097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020484425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:41 Heat of formation + Delta-G solvation = -66.998061 kcal Electronic energy + Delta-G solvation = -28528.806536 eV Core-core repulsion = 24325.924403 eV Total energy + Delta-G solvation = -4202.882133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.05764 -40.96088 -39.50821 -37.75696 -36.94616 -34.60917 -33.99288 -32.86207 -31.45547 -30.01597 -29.55958 -29.16914 -27.49396 -24.86419 -23.82789 -22.77043 -22.21954 -21.40326 -20.89855 -19.61251 -18.86498 -17.72633 -17.49940 -17.33344 -16.48708 -16.23954 -16.01327 -15.68732 -15.29531 -15.14398 -14.57668 -14.34239 -14.26381 -13.94886 -13.88894 -13.51005 -13.23559 -13.17390 -12.99490 -12.70150 -12.36586 -12.26978 -12.15496 -11.99441 -11.81494 -11.51281 -11.45004 -11.18978 -11.12043 -11.08353 -10.76713 -10.68631 -9.94486 -9.71234 -9.49555 -9.42880 -9.13933 -8.91253 -8.30995 -7.57516 -7.01829 -6.72302 -4.36101 0.83768 0.93245 2.44078 2.62524 2.93706 3.04967 3.07098 3.09508 3.24780 3.28487 3.70838 3.92866 4.02263 4.31665 4.36842 4.49715 4.54854 4.62041 4.76287 4.80652 4.90635 5.02918 5.15658 5.26368 5.36323 5.53693 5.63048 5.65159 5.74920 5.80816 5.85506 5.88635 5.97300 6.08094 6.34287 6.38970 6.70217 6.90812 6.99612 7.06756 7.14378 7.23185 7.55180 7.61438 7.88680 8.02474 8.11403 8.25626 8.58408 8.64323 8.85876 8.94842 10.20627 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023913 B = 0.002015 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.654011 B =13895.440028 C =14111.157321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.141 4.141 3 C 0.066 3.934 4 H 0.101 0.899 5 O -0.275 6.275 6 C 0.130 3.870 7 C -0.187 4.187 8 C -0.110 4.110 9 C 0.052 3.948 10 F -0.144 7.144 11 C -0.111 4.111 12 C -0.123 4.123 13 C 0.498 3.502 14 O -0.505 6.505 15 N -0.644 5.644 16 C -0.007 4.007 17 C -0.087 4.087 18 C -0.149 4.149 19 C 0.107 3.893 20 C -0.459 4.459 21 H 0.077 0.923 22 C 0.072 3.928 23 N -0.798 5.798 24 Si 0.912 3.088 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.266 1.266 28 C -0.212 4.212 29 C -0.104 4.104 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.394 0.606 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.281 0.719 43 H 0.097 0.903 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.893 1.970 0.532 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C 0.006 3.994 4 H 0.118 0.882 5 O -0.187 6.187 6 C 0.084 3.916 7 C -0.206 4.206 8 C -0.129 4.129 9 C 0.033 3.967 10 F -0.122 7.122 11 C -0.130 4.130 12 C -0.142 4.142 13 C 0.283 3.717 14 O -0.379 6.379 15 N -0.289 5.289 16 C -0.099 4.099 17 C -0.107 4.107 18 C -0.169 4.169 19 C 0.104 3.896 20 C -0.489 4.489 21 H 0.095 0.905 22 C -0.145 4.145 23 N -0.424 5.424 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.191 1.191 28 C -0.232 4.232 29 C -0.124 4.124 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.228 0.772 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.236 2.094 1.547 20.402 hybrid contribution 0.270 -0.059 -0.627 0.685 sum -19.966 2.035 0.919 20.090 Atomic orbital electron populations 1.21957 0.94564 1.02633 1.02256 1.22026 0.97142 0.94084 1.04599 1.22454 0.94161 0.95071 0.87740 0.88206 1.86270 1.37430 1.61416 1.33575 1.19113 0.86449 0.91892 0.94137 1.21225 0.96883 1.04125 0.98327 1.20899 0.96983 0.97398 0.97643 1.17567 0.85728 0.98000 0.95400 1.91485 1.48052 1.75475 1.97222 1.20956 0.94710 0.99752 0.97571 1.20318 0.97062 0.99045 0.97776 1.20054 0.88442 0.79399 0.83832 1.90744 1.64022 1.45010 1.38119 1.42802 1.07368 1.59617 1.19136 1.17159 0.79973 1.17255 0.95478 1.20558 0.93645 0.99786 0.96691 1.21051 0.92790 1.05108 0.97983 1.17700 0.93231 0.88135 0.90535 1.19512 0.91034 1.23510 1.14801 0.90467 1.25917 1.01541 0.93419 0.93653 1.69797 1.37878 1.15958 1.18787 0.86300 0.81626 0.79409 0.78963 1.18864 1.20337 1.19055 1.20600 0.92344 1.12514 0.97729 1.20041 0.95384 1.02701 0.94297 0.92296 0.91785 0.92072 0.89535 0.89757 0.84030 0.84498 0.84072 0.83890 0.77202 0.87588 0.86020 0.90806 0.88499 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.46 37.16 0.31 -0.87 16 2 C -0.14 -1.33 5.61 -26.73 -0.15 -1.48 16 3 C 0.07 0.79 2.57 -27.88 -0.07 0.72 16 4 H 0.10 0.94 5.37 -51.93 -0.28 0.66 16 5 O -0.28 -3.76 9.19 -39.43 -0.36 -4.12 16 6 C 0.13 1.47 5.39 -39.24 -0.21 1.25 16 7 C -0.19 -1.72 7.21 -39.44 -0.28 -2.00 16 8 C -0.11 -0.96 10.02 -39.53 -0.40 -1.36 16 9 C 0.05 0.51 7.30 -39.42 -0.29 0.22 16 10 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 11 C -0.11 -1.01 10.02 -39.53 -0.40 -1.40 16 12 C -0.12 -1.26 9.98 -39.44 -0.39 -1.65 16 13 C 0.50 8.46 7.01 -10.98 -0.08 8.38 16 14 O -0.50 -11.12 13.96 -14.31 -0.20 -11.32 16 15 N -0.64 -10.62 5.23 -9.73 -0.05 -10.67 16 16 C -0.01 -0.15 6.29 -83.57 -0.53 -0.67 16 17 C -0.09 -2.13 8.61 -39.79 -0.34 -2.48 16 18 C -0.15 -3.96 8.60 -39.26 -0.34 -4.30 16 19 C 0.11 2.82 5.54 -106.80 -0.59 2.23 16 20 C -0.46 -12.05 9.04 -37.86 -0.34 -12.39 16 21 H 0.08 1.93 7.87 -52.48 -0.41 1.52 16 22 C 0.07 1.80 5.25 -17.34 -0.09 1.71 16 23 N -0.80 -20.69 10.87 55.55 0.60 -20.09 16 24 Si 0.91 18.69 29.57 -169.99 -5.03 13.66 16 25 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 28 C -0.21 -5.02 9.74 -39.26 -0.38 -5.40 16 29 C -0.10 -2.20 9.90 -39.79 -0.39 -2.60 16 30 H 0.06 0.36 6.80 -51.93 -0.35 0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.53 6.33 -51.93 -0.33 0.20 16 33 H 0.09 0.68 7.65 -51.93 -0.40 0.28 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.14 1.04 4.49 -52.49 -0.24 0.81 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.39 4.79 8.37 -40.82 -0.34 4.45 16 40 H 0.11 2.63 6.27 -52.49 -0.33 2.30 16 41 H 0.12 3.37 6.26 -52.48 -0.33 3.04 16 42 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 43 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -31.19 368.22 -9.51 -40.70 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.10 Total: 9.82 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -4.96 Total: -22.09 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.55 Total: -30.76 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.56 Total: -15.44 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.19 -9.51 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020484425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.302 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds