Wall clock time and date at job start Tue Mar 31 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46819 * 2 1 4 4 H 1.08998 * 109.47260 * 55.00515 * 3 2 1 5 5 O 1.42894 * 109.47201 * 294.99583 * 3 2 1 6 6 C 1.35949 * 116.99749 * 98.94472 * 5 3 2 7 7 C 1.38699 * 120.03116 * 355.13950 * 6 5 3 8 8 C 1.38152 * 119.97255 * 179.97438 * 7 6 5 9 9 C 1.38458 * 120.02796 * 0.25868 * 8 7 6 10 10 F 1.35094 * 119.96901 * 179.72412 * 9 8 7 11 11 C 1.38452 * 120.05845 * 359.48364 * 9 8 7 12 12 C 1.38152 * 120.02862 * 0.51940 * 11 9 8 13 13 C 1.50709 * 109.46809 * 175.00090 * 3 2 1 14 14 O 1.21275 * 120.00015 * 120.00074 * 13 3 2 15 15 N 1.34782 * 119.99875 * 299.99786 * 13 3 2 16 16 C 1.39232 * 119.99825 * 184.94587 * 15 13 3 17 17 C 1.39481 * 119.83339 * 213.55017 * 16 15 13 18 18 C 1.36378 * 120.16736 * 179.76049 * 17 16 15 19 19 C 1.40868 * 119.82783 * 0.52325 * 18 17 16 20 20 C 1.41152 * 120.16382 * 179.71914 * 19 18 17 21 21 H 1.08000 * 119.99906 * 208.52068 * 20 19 18 22 22 C 1.39908 * 120.00354 * 28.51793 * 20 19 18 23 23 N 1.30876 * 119.99325 * 11.19115 * 22 20 19 24 24 Si 1.86794 * 120.00154 * 191.19048 * 22 20 19 25 25 H 1.48499 * 109.47410 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47232 * 120.00406 * 24 22 20 27 27 H 1.48504 * 109.46930 * 239.99802 * 24 22 20 28 28 C 1.40870 * 119.67443 * 359.73512 * 19 18 17 29 29 C 1.36373 * 119.82552 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47053 * 299.99870 * 1 2 3 31 31 H 1.08994 * 109.46597 * 60.00165 * 1 2 3 32 32 H 1.08997 * 109.46789 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47225 * 239.99625 * 2 1 3 34 34 H 1.09006 * 109.47234 * 119.99672 * 2 1 3 35 35 H 1.08003 * 120.01613 * 359.95315 * 7 6 5 36 36 H 1.08000 * 119.98471 * 179.97438 * 8 7 6 37 37 H 1.07994 * 119.98359 * 180.25559 * 11 9 8 38 38 H 1.08004 * 120.01295 * 179.72092 * 12 11 9 39 39 H 0.97003 * 119.99776 * 4.94690 * 15 13 3 40 40 H 1.07993 * 119.91334 * 0.03229 * 17 16 15 41 41 H 1.07993 * 120.08351 * 180.25940 * 18 17 16 42 42 H 0.97003 * 119.99581 * 179.97438 * 23 22 20 43 43 H 1.07997 * 120.08697 * 179.97438 * 28 19 18 44 44 H 1.08004 * 119.91431 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 0.5605 2.8773 -1.1858 7 6 -0.1992 2.9604 -0.0284 8 6 -1.3181 3.7700 0.0062 9 6 -1.6843 4.4942 -1.1156 10 9 -2.7818 5.2812 -1.0823 11 6 -0.9239 4.4162 -2.2700 12 6 0.1955 3.6073 -2.3073 13 6 3.5420 1.4443 0.1238 14 8 4.2217 1.9436 -0.7477 15 7 4.1299 0.8911 1.2032 16 6 5.5093 0.9833 1.3684 17 6 6.2063 -0.0599 1.9778 18 6 7.5582 0.0210 2.1387 19 6 8.2489 1.1667 1.6975 20 6 9.6472 1.2605 1.8658 21 1 10.1143 2.2281 1.9749 22 6 10.4282 0.0999 1.8914 23 7 9.9053 -1.0484 1.5439 24 14 12.2171 0.1895 2.4216 25 1 12.5631 1.5930 2.7613 26 1 12.4245 -0.6740 3.6118 27 1 13.0861 -0.2795 1.3124 28 6 7.5373 2.2185 1.0878 29 6 6.1863 2.1210 0.9294 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8935 -0.5138 0.8901 35 1 0.0837 2.3922 0.8455 36 1 -1.9099 3.8346 0.9073 37 1 -1.2083 4.9848 -3.1431 38 1 0.7859 3.5433 -3.2094 39 1 3.5919 0.4289 1.8649 40 1 5.6747 -0.9358 2.3192 41 1 8.0971 -0.7893 2.6070 42 1 10.4468 -1.8530 1.5613 43 1 8.0601 3.1000 0.7474 44 1 5.6392 2.9267 0.4625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020484428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:45 Heat of formation + Delta-G solvation = -67.963787 kcal Electronic energy + Delta-G solvation = -28493.872077 eV Core-core repulsion = 24290.948066 eV Total energy + Delta-G solvation = -4202.924010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.137 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.06066 -40.95187 -39.50642 -37.76200 -36.95268 -34.63138 -34.01526 -32.86691 -31.45505 -29.97945 -29.64983 -29.11600 -27.49618 -24.86925 -23.82184 -22.76956 -22.32909 -21.38404 -20.80818 -19.68484 -18.86548 -17.74059 -17.52911 -17.30894 -16.45861 -16.31948 -15.94142 -15.66329 -15.29540 -15.09788 -14.58260 -14.42821 -14.25492 -13.95643 -13.88661 -13.54194 -13.28232 -13.14259 -12.93920 -12.75526 -12.33226 -12.30828 -12.14145 -12.03911 -11.83744 -11.53008 -11.40484 -11.18694 -11.14492 -11.00084 -10.79018 -10.74201 -9.99811 -9.61857 -9.49918 -9.44889 -9.20686 -8.97426 -8.32003 -7.60567 -7.00239 -6.74848 -4.36251 0.83646 0.92779 2.43320 2.59981 2.92156 3.03747 3.06158 3.11412 3.26164 3.29463 3.69339 3.91493 4.02306 4.32412 4.36839 4.48346 4.53238 4.62742 4.75472 4.80386 4.88383 5.02645 5.15430 5.26620 5.35612 5.53136 5.62623 5.63879 5.74845 5.80473 5.85518 5.88101 5.97399 6.13029 6.35354 6.38899 6.67749 6.83139 6.99885 7.08004 7.12811 7.22848 7.54502 7.64468 7.80966 7.98886 8.17543 8.23316 8.53929 8.63891 8.84891 8.93298 10.17760 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.001988 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.769081 B =14081.121300 C =14595.683199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.140 4.140 3 C 0.066 3.934 4 H 0.102 0.898 5 O -0.275 6.275 6 C 0.129 3.871 7 C -0.188 4.188 8 C -0.111 4.111 9 C 0.053 3.947 10 F -0.143 7.143 11 C -0.111 4.111 12 C -0.122 4.122 13 C 0.496 3.504 14 O -0.507 6.507 15 N -0.644 5.644 16 C -0.006 4.006 17 C -0.113 4.113 18 C -0.148 4.148 19 C 0.105 3.895 20 C -0.456 4.456 21 H 0.078 0.922 22 C 0.071 3.929 23 N -0.799 5.799 24 Si 0.912 3.088 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.274 1.274 28 C -0.211 4.211 29 C -0.078 4.078 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.395 0.605 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.280 0.720 43 H 0.096 0.904 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.783 2.536 -0.798 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.119 0.881 5 O -0.187 6.187 6 C 0.083 3.917 7 C -0.206 4.206 8 C -0.129 4.129 9 C 0.034 3.966 10 F -0.122 7.122 11 C -0.130 4.130 12 C -0.141 4.141 13 C 0.280 3.720 14 O -0.381 6.381 15 N -0.289 5.289 16 C -0.098 4.098 17 C -0.133 4.133 18 C -0.168 4.168 19 C 0.102 3.898 20 C -0.486 4.486 21 H 0.097 0.903 22 C -0.146 4.146 23 N -0.425 5.425 24 Si 0.737 3.263 25 H -0.184 1.184 26 H -0.198 1.198 27 H -0.200 1.200 28 C -0.231 4.231 29 C -0.098 4.098 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.229 0.771 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.144 2.653 -1.643 20.385 hybrid contribution 0.270 -0.258 0.672 0.769 sum -19.874 2.395 -0.971 20.042 Atomic orbital electron populations 1.21949 0.94570 1.02650 1.02232 1.22012 0.97139 0.94031 1.04559 1.22465 0.94067 0.95151 0.87741 0.88078 1.86260 1.41295 1.58334 1.32830 1.19120 0.87059 0.91169 0.94324 1.21254 0.97193 1.03481 0.98677 1.20904 0.97606 0.96587 0.97851 1.17569 0.87040 0.96202 0.95831 1.91483 1.51236 1.72422 1.97081 1.20958 0.94741 0.99722 0.97598 1.20329 0.97989 0.97428 0.98356 1.20102 0.88564 0.80776 0.82531 1.90747 1.64317 1.44012 1.38993 1.42869 1.07501 1.55743 1.22760 1.17133 0.80700 0.97571 1.14350 1.20222 0.94994 0.95397 1.02737 1.20956 0.91571 1.00559 1.03672 1.17701 0.93335 0.90955 0.87772 1.19600 0.91950 0.93703 1.43325 0.90342 1.25929 1.01166 0.94849 0.92626 1.69821 1.38122 0.99918 1.34619 0.86197 0.81589 0.79614 0.78941 1.18435 1.19775 1.19980 1.20701 0.93376 1.01455 1.07612 1.20249 0.94631 0.95378 0.99521 0.92323 0.92044 0.91755 0.89740 0.89559 0.83985 0.84490 0.84066 0.83886 0.77139 0.89063 0.85795 0.90948 0.88572 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.48 37.16 0.32 -0.85 16 2 C -0.14 -1.31 5.58 -26.73 -0.15 -1.46 16 3 C 0.07 0.79 2.56 -27.88 -0.07 0.72 16 4 H 0.10 0.95 5.41 -51.93 -0.28 0.67 16 5 O -0.28 -3.75 9.12 -39.49 -0.36 -4.11 16 6 C 0.13 1.46 5.62 -39.24 -0.22 1.24 16 7 C -0.19 -1.72 7.35 -39.44 -0.29 -2.01 16 8 C -0.11 -0.96 10.02 -39.53 -0.40 -1.36 16 9 C 0.05 0.51 7.30 -39.42 -0.29 0.23 16 10 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 11 C -0.11 -1.01 10.02 -39.53 -0.40 -1.41 16 12 C -0.12 -1.26 9.98 -39.44 -0.39 -1.65 16 13 C 0.50 8.42 6.96 -10.98 -0.08 8.35 16 14 O -0.51 -11.17 14.17 -14.35 -0.20 -11.37 16 15 N -0.64 -10.65 5.21 -9.74 -0.05 -10.70 16 16 C -0.01 -0.12 6.28 -83.57 -0.53 -0.65 16 17 C -0.11 -2.50 9.89 -39.79 -0.39 -2.89 16 18 C -0.15 -3.71 8.60 -39.26 -0.34 -4.04 16 19 C 0.11 2.77 5.55 -106.80 -0.59 2.18 16 20 C -0.46 -11.96 9.05 -37.85 -0.34 -12.30 16 21 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 22 C 0.07 1.76 5.24 -17.33 -0.09 1.67 16 23 N -0.80 -20.38 10.84 55.55 0.60 -19.78 16 24 Si 0.91 18.48 29.57 -169.99 -5.03 13.45 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.21 -5.31 9.74 -39.26 -0.38 -5.69 16 29 C -0.08 -1.84 8.57 -39.79 -0.34 -2.18 16 30 H 0.06 0.35 6.74 -51.93 -0.35 0.00 16 31 H 0.06 0.52 6.51 -51.93 -0.34 0.19 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.66 7.33 -51.93 -0.38 0.28 16 35 H 0.14 1.04 4.30 -52.48 -0.23 0.82 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.39 4.83 8.03 -40.82 -0.33 4.50 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.12 3.19 6.20 -52.49 -0.33 2.86 16 42 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 43 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 44 H 0.10 2.37 6.42 -52.48 -0.34 2.03 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -31.27 367.98 -9.50 -40.77 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.07 Total: 9.76 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -4.97 Total: -22.12 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.55 Total: -30.48 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.56 Total: -15.48 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.27 -9.50 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020484428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.197 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds