Wall clock time and date at job start Tue Mar 31 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00019 * 2 1 4 4 C 1.50703 * 109.47283 * 269.99273 * 3 2 1 5 5 H 1.08001 * 119.99544 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00522 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99956 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00368 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47112 * 59.99961 * 8 6 4 10 10 H 1.48502 * 109.47591 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47019 * 300.00020 * 8 6 4 12 12 C 1.34777 * 119.99681 * 179.97438 * 2 1 3 13 13 O 1.21564 * 120.00190 * 182.77941 * 12 2 1 14 14 C 1.47740 * 120.00107 * 2.78038 * 12 2 1 15 15 N 1.32211 * 126.48791 * 355.00060 * 14 12 2 16 16 N 1.28792 * 110.51530 * 179.97438 * 15 14 12 17 17 C 1.46497 * 125.09667 * 179.91505 * 16 15 14 18 18 C 1.35762 * 109.80606 * 359.89518 * 16 15 14 19 19 C 1.36860 * 106.76868 * 0.19829 * 18 16 15 20 20 C 1.50265 * 124.86201 * 179.75068 * 19 18 16 21 21 S 1.81561 * 108.91544 * 326.38365 * 20 19 18 22 22 C 1.76133 * 103.48412 * 44.24805 * 21 20 19 23 23 C 1.38902 * 119.84577 * 148.36564 * 22 21 20 24 24 C 1.38081 * 120.11874 * 179.21316 * 23 22 21 25 25 C 1.38457 * 120.42253 * 359.97438 * 24 23 22 26 26 C 1.38014 * 120.24002 * 0.25016 * 25 24 23 27 27 C 1.39312 * 119.91462 * 0.02588 * 26 25 24 28 28 H 1.08999 * 109.47392 * 263.91105 * 1 2 3 29 29 H 1.09007 * 109.46949 * 23.90541 * 1 2 3 30 30 H 1.08998 * 109.47448 * 143.90191 * 1 2 3 31 31 H 1.08997 * 109.47623 * 29.99906 * 3 2 1 32 32 H 1.09006 * 109.47040 * 150.00214 * 3 2 1 33 33 H 0.96998 * 120.00296 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47272 * 89.97675 * 17 16 15 35 35 H 1.09000 * 109.46932 * 209.98069 * 17 16 15 36 36 H 1.09005 * 109.47005 * 329.97770 * 17 16 15 37 37 H 1.09005 * 109.56178 * 206.55376 * 20 19 18 38 38 H 1.08997 * 109.65583 * 86.27233 * 20 19 18 39 39 H 1.08005 * 119.93787 * 359.23787 * 23 22 21 40 40 H 1.08001 * 119.78562 * 180.27105 * 24 23 22 41 41 H 1.08004 * 119.87952 * 180.27303 * 25 24 23 42 42 H 1.08007 * 120.04460 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1271 2.8772 -1.6728 7 7 3.5552 3.6170 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.1403 3.5951 -4.1334 10 1 4.1817 4.7021 -3.4341 11 1 4.2397 2.3815 -4.1345 12 6 2.1388 -1.1672 0.0005 13 8 3.3534 -1.1679 0.0516 14 6 1.4014 -2.4460 -0.0610 15 7 0.0886 -2.5988 -0.0271 16 7 -0.2226 -3.8464 -0.1014 17 6 -1.5884 -4.3759 -0.0895 18 6 0.9049 -4.5971 -0.1927 19 6 1.9614 -3.7276 -0.1662 20 6 3.4073 -4.1303 -0.2381 21 16 3.6159 -5.7271 0.6006 22 6 2.2539 -6.6788 0.0164 23 6 2.3825 -8.0545 -0.1263 24 6 1.3133 -8.8082 -0.5684 25 6 0.1061 -8.2020 -0.8723 26 6 -0.0381 -6.8357 -0.7407 27 6 1.0345 -6.0630 -0.3012 28 1 -0.3634 -0.1090 1.0218 29 1 -0.3633 0.9396 -0.4165 30 1 -0.3634 -0.8303 -0.6054 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0327 4.4425 -0.8505 34 1 -1.9634 -4.4369 -1.1112 35 1 -1.5888 -5.3700 0.3576 36 1 -2.2294 -3.7149 0.4939 37 1 4.0212 -3.3763 0.2546 38 1 3.7106 -4.2234 -1.2809 39 1 3.3203 -8.5355 0.1093 40 1 1.4179 -9.8780 -0.6732 41 1 -0.7258 -8.8005 -1.2131 42 1 -0.9810 -6.3660 -0.9791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020485205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:38 Heat of formation + Delta-G solvation = 90.429555 kcal Electronic energy + Delta-G solvation = -27124.029970 eV Core-core repulsion = 23390.647243 eV Total energy + Delta-G solvation = -3733.382727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78681 -39.31113 -38.58831 -34.98563 -34.26881 -33.52130 -32.49581 -31.33702 -30.25882 -28.61320 -27.57446 -26.79058 -25.55734 -23.46726 -23.35400 -23.12739 -21.27106 -20.42500 -18.78493 -17.63404 -17.15822 -16.65602 -16.39853 -16.29196 -15.83474 -15.24418 -15.18446 -14.93496 -14.41498 -14.28933 -14.16029 -13.85539 -13.66739 -13.31470 -13.14852 -12.90259 -12.71266 -12.63912 -12.27475 -12.14963 -12.01818 -11.71276 -11.45427 -11.17211 -10.95932 -10.67156 -10.56177 -10.36964 -10.17164 -10.08902 -9.73553 -9.62236 -9.15575 -8.97039 -8.46198 -8.41039 -7.61163 -7.56233 -6.02110 -4.07083 0.43173 0.86779 1.44463 1.81088 2.04867 2.27491 2.43120 3.33982 3.37912 3.38062 3.41259 3.80278 3.97973 4.15625 4.20067 4.41471 4.47041 4.60496 4.71927 4.77943 4.81673 4.97746 5.02671 5.04004 5.22459 5.27989 5.32246 5.36997 5.48945 5.57387 5.83353 5.92964 5.95685 5.99896 6.06667 6.14711 6.25943 6.41886 6.46660 6.67951 7.10102 7.45273 7.55079 7.83085 7.94777 8.24484 8.40895 8.88873 9.05718 9.57703 11.05900 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.002969 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.771425 B = 9429.896957 C =10109.807148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.583 5.583 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.587 3.413 13 O -0.533 6.533 14 C 0.025 3.975 15 N -0.246 5.246 16 N -0.275 5.275 17 C 0.080 3.920 18 C 0.040 3.960 19 C -0.140 4.140 20 C -0.023 4.023 21 S -0.104 6.104 22 C -0.072 4.072 23 C -0.088 4.088 24 C -0.105 4.105 25 C -0.115 4.115 26 C -0.111 4.111 27 C -0.012 4.012 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 -25.284 1.477 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.313 5.313 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.371 3.629 13 O -0.409 6.409 14 C -0.135 4.135 15 N -0.082 5.082 16 N -0.061 5.061 17 C -0.060 4.060 18 C -0.085 4.085 19 C -0.152 4.152 20 C -0.171 4.171 21 S 0.141 5.859 22 C -0.186 4.186 23 C -0.111 4.111 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.131 4.131 27 C -0.019 4.019 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.161 0.839 38 H 0.119 0.881 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.401 -24.667 2.421 26.879 hybrid contribution -0.464 0.341 -1.945 2.028 sum -10.865 -24.326 0.476 26.646 Atomic orbital electron populations 1.21929 0.80523 1.03002 1.00843 1.48032 1.06901 1.07161 1.69224 1.19381 0.92693 0.77667 0.97660 1.21392 1.36639 1.06415 0.92177 0.92467 1.24923 0.95314 0.96320 0.97451 1.69925 1.38246 1.14394 1.30777 0.86551 0.78352 0.77826 0.84657 1.20271 1.21145 1.20140 1.16827 0.86267 0.81375 0.78448 1.90725 1.12526 1.86128 1.51509 1.21943 0.88999 0.95136 1.07407 1.74112 1.16058 0.98170 1.19815 1.45459 1.06596 1.03264 1.50804 1.22383 0.78158 1.00910 1.04574 1.19283 0.86879 0.91756 1.10627 1.19761 0.94431 0.91838 1.09195 1.21989 0.94690 0.95908 1.04549 1.85356 1.30537 1.09626 1.60394 1.21880 0.96017 0.97163 1.03584 1.20945 0.99695 0.91397 0.99048 1.21184 0.92734 1.00046 0.98583 1.21099 0.97951 0.94206 1.00262 1.21281 0.97821 0.94212 0.99784 1.17685 0.93676 0.88336 1.02237 0.93853 0.91166 0.90191 0.94664 0.93489 0.92631 0.89431 0.88411 0.87990 0.83855 0.88103 0.84734 0.85221 0.85323 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 9.61 59.85 0.58 2.07 16 2 N -0.58 -13.40 2.86 -184.12 -0.53 -13.93 16 3 C 0.24 6.60 5.15 -5.20 -0.03 6.57 16 4 C -0.53 -15.26 9.39 -34.44 -0.32 -15.59 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.59 13.41 7.68 -12.38 -0.10 13.32 16 13 O -0.53 -13.63 14.78 5.31 0.08 -13.55 16 14 C 0.03 0.48 6.80 -83.06 -0.56 -0.09 16 15 N -0.25 -4.00 8.50 33.24 0.28 -3.71 16 16 N -0.27 -3.60 3.73 -64.37 -0.24 -3.84 16 17 C 0.08 0.58 9.72 59.85 0.58 1.16 16 18 C 0.04 0.57 6.66 -82.82 -0.55 0.02 16 19 C -0.14 -2.38 5.93 -104.57 -0.62 -3.00 16 20 C -0.02 -0.36 6.43 35.79 0.23 -0.13 16 21 S -0.10 -1.39 22.09 -107.50 -2.37 -3.77 16 22 C -0.07 -0.87 6.03 -38.58 -0.23 -1.10 16 23 C -0.09 -0.82 9.77 -39.39 -0.38 -1.20 16 24 C -0.11 -0.77 10.02 -39.56 -0.40 -1.17 16 25 C -0.11 -0.81 10.03 -39.58 -0.40 -1.21 16 26 C -0.11 -0.97 8.71 -39.26 -0.34 -1.31 16 27 C -0.01 -0.14 5.83 -104.94 -0.61 -0.75 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.27 8.03 -51.92 -0.42 0.86 16 30 H 0.08 1.38 5.37 -51.93 -0.28 1.10 16 31 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 0.47 8.02 -51.93 -0.42 0.05 16 35 H 0.10 0.52 6.15 -51.93 -0.32 0.20 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.14 2.49 6.68 -51.92 -0.35 2.14 16 38 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.13 0.82 5.25 -52.48 -0.28 0.54 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -35.07 358.98 -9.85 -44.92 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.94 Total: -1.83 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.26 Total: -0.72 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.25 Total: -47.57 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.37 Total: -3.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.07 -9.85 -44.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020485205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.351 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds