Wall clock time and date at job start Tue Mar 31 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40921 * 120.43440 * 242.55309 * 3 2 1 5 5 N 1.38027 * 119.59749 * 0.04229 * 4 3 2 6 6 N 1.32301 * 120.81073 * 180.02562 * 4 3 2 7 7 C 1.32473 * 121.84675 * 359.97438 * 6 4 3 8 8 S 1.76197 * 119.60590 * 180.02562 * 7 6 4 9 9 C 1.80998 * 100.00090 * 359.97438 * 8 7 6 10 10 C 1.50701 * 109.47201 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00014 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00310 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99673 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00266 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47352 * 59.99931 * 14 12 10 16 16 H 1.48497 * 109.47347 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47036 * 299.99793 * 14 12 10 18 18 C 1.40921 * 120.78569 * 359.74659 * 7 6 4 19 19 C 1.43196 * 120.44668 * 180.28471 * 18 7 6 20 20 N 5.93187 * 145.99822 * 62.29741 * 2 1 3 21 21 C 1.39684 * 120.44075 * 62.57949 * 3 2 1 22 22 C 1.50703 * 120.83846 * 359.94947 * 21 3 2 23 23 C 1.53006 * 109.47126 * 300.00094 * 22 21 3 24 24 C 1.52997 * 109.47127 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47060 * 300.00449 * 24 23 22 26 26 C 1.52996 * 109.47328 * 60.00126 * 25 24 23 27 27 C 1.52997 * 109.47084 * 60.00125 * 22 21 3 28 28 H 0.97003 * 119.99549 * 0.02562 * 5 4 3 29 29 H 0.96998 * 120.00127 * 179.97438 * 5 4 3 30 30 H 1.08994 * 109.47345 * 300.00021 * 9 8 7 31 31 H 1.09002 * 109.47113 * 60.00002 * 9 8 7 32 32 H 0.97005 * 119.99686 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.46980 * 180.02562 * 22 21 3 34 34 H 1.08998 * 109.46505 * 59.99690 * 23 22 21 35 35 H 1.08996 * 109.46884 * 300.00571 * 23 22 21 36 36 H 1.09002 * 109.47153 * 180.02562 * 24 23 22 37 37 H 1.09001 * 109.46832 * 60.00321 * 24 23 22 38 38 H 1.09004 * 109.46724 * 180.02562 * 25 24 23 39 39 H 1.09001 * 109.47194 * 299.99650 * 25 24 23 40 40 H 1.08992 * 109.47554 * 59.99639 * 26 25 24 41 41 H 1.09004 * 109.47108 * 179.97438 * 26 25 24 42 42 H 1.09002 * 109.47045 * 60.00033 * 27 22 21 43 43 H 1.09001 * 109.47375 * 299.99958 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2815 0.5610 1.0783 5 7 2.5918 1.1111 2.1398 6 7 4.6045 0.5660 1.0857 7 6 5.3111 0.0498 0.0912 8 16 7.0712 0.0877 0.1626 9 6 7.3035 0.9158 1.7552 10 6 8.7770 1.0615 2.0355 11 1 9.5011 0.6921 1.3243 12 6 9.2008 1.6663 3.1997 13 7 8.3191 2.1165 4.0655 14 14 11.0273 1.8475 3.5469 15 1 11.6576 2.6562 2.4726 16 1 11.2179 2.5257 4.8541 17 1 11.6586 0.5040 3.5902 18 6 4.6718 -0.5345 -1.0205 19 6 5.4428 -1.0958 -2.0887 20 7 6.0536 -1.5421 -2.9370 21 6 3.2759 -0.5536 -1.0690 22 6 2.5520 -1.1636 -2.2416 23 6 1.6758 -2.3197 -1.7548 24 6 0.9404 -2.9385 -2.9452 25 6 0.0614 -1.8769 -3.6095 26 6 0.9376 -0.7210 -4.0963 27 6 1.6730 -0.1024 -2.9064 28 1 1.6218 1.1099 2.1407 29 1 3.0771 1.4980 2.8852 30 1 6.8402 1.9019 1.7229 31 1 6.8408 0.3227 2.5440 32 1 8.6173 2.5417 4.8848 33 1 3.2788 -1.5377 -2.9627 34 1 0.9491 -1.9459 -1.0335 35 1 2.3020 -3.0756 -1.2811 36 1 0.3158 -3.7618 -2.5983 37 1 1.6669 -3.3121 -3.6668 38 1 -0.4629 -2.3180 -4.4573 39 1 -0.6652 -1.5033 -2.8880 40 1 1.6641 -1.0946 -4.8178 41 1 0.3114 0.0351 -4.5700 42 1 2.2972 0.7212 -3.2532 43 1 0.9462 0.2713 -2.1852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020494932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:17 Heat of formation + Delta-G solvation = 64.614036 kcal Electronic energy + Delta-G solvation = -26611.653345 eV Core-core repulsion = 22974.869836 eV Total energy + Delta-G solvation = -3636.783510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96307 -38.69506 -36.94911 -36.27646 -34.87376 -33.61282 -33.25027 -31.01925 -30.18778 -29.98357 -28.66978 -25.37630 -24.16390 -22.98445 -22.85881 -21.80921 -20.24349 -20.09795 -18.32035 -17.67820 -17.13231 -16.39241 -15.65953 -15.62879 -15.35702 -15.10897 -14.65762 -14.58880 -14.35726 -13.87116 -13.54231 -13.46608 -13.29084 -13.19575 -13.05207 -12.82466 -12.68664 -12.54964 -12.45392 -12.44230 -12.41109 -12.20780 -11.31582 -11.31506 -11.09711 -10.94637 -10.87503 -10.68807 -10.60136 -10.50459 -10.47487 -9.76800 -9.69346 -9.57193 -9.37578 -8.71859 -8.31769 -7.15621 -6.29443 -4.36590 0.53248 0.86472 1.90446 2.51111 2.71998 2.79019 3.11294 3.21921 3.25963 3.29605 3.30027 3.44124 3.77693 3.87029 4.05248 4.20272 4.26747 4.38421 4.51740 4.65408 4.76406 5.00111 5.01490 5.08147 5.11386 5.20314 5.21459 5.26317 5.39184 5.41405 5.53237 5.67505 5.78367 5.87312 5.87647 5.91600 5.96611 6.03530 6.04446 6.22296 6.86487 7.00382 7.10744 7.12162 7.37139 7.60056 7.69402 7.84067 7.95200 8.64205 9.27856 10.80776 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.002981 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.912631 B = 9389.560920 C =10563.379298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.278 3.722 3 C -0.191 4.191 4 C 0.497 3.503 5 N -0.826 5.826 6 N -0.535 5.535 7 C 0.249 3.751 8 S -0.050 6.050 9 C 0.070 3.930 10 C -0.530 4.530 11 H 0.066 0.934 12 C 0.073 3.927 13 N -0.883 5.883 14 Si 0.905 3.095 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.144 4.144 19 C 0.274 3.726 20 N -0.419 5.419 21 C 0.118 3.882 22 C -0.061 4.061 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.117 4.117 28 H 0.409 0.591 29 H 0.418 0.582 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.267 0.733 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.953 -4.716 -9.084 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.035 4.035 3 C -0.207 4.207 4 C 0.247 3.753 5 N -0.366 5.366 6 N -0.258 5.258 7 C -0.007 4.007 8 S 0.199 5.801 9 C -0.077 4.077 10 C -0.570 4.570 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.520 5.520 14 Si 0.732 3.268 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.198 1.198 18 C -0.160 4.160 19 C -0.041 4.041 20 N -0.095 5.095 21 C 0.104 3.896 22 C -0.080 4.080 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.159 4.159 26 C -0.154 4.154 27 C -0.155 4.155 28 H 0.240 0.760 29 H 0.249 0.751 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.321 -5.314 -10.221 19.169 hybrid contribution -0.331 0.684 1.309 1.514 sum -15.652 -4.630 -8.912 18.597 Atomic orbital electron populations 1.81291 1.11345 1.10450 1.07962 1.25006 0.92006 0.93041 0.93484 1.15684 0.85285 1.19639 1.00053 1.18247 0.88048 0.84108 0.84849 1.42274 1.09365 1.63500 1.21432 1.67971 1.04262 1.26193 1.27400 1.23783 1.01216 0.87708 0.87983 1.86177 0.90166 1.70082 1.33700 1.21405 1.01017 0.98419 0.86821 1.20633 0.89602 1.41071 1.05697 0.91573 1.24899 0.98500 0.94527 0.95319 1.69941 1.33933 1.38083 1.10071 0.86438 0.84011 0.78697 0.77703 1.19822 1.20949 1.19828 1.15902 0.90440 1.14535 0.95165 1.24883 0.93349 0.93253 0.92601 1.81222 1.07496 1.10198 1.10609 1.19859 0.90642 0.87053 0.92001 1.20444 0.97503 0.96159 0.93848 1.21695 0.98590 0.96757 0.98424 1.21504 0.98795 0.97851 0.97270 1.21559 0.98020 0.96101 1.00239 1.21494 0.98809 0.97810 0.97306 1.21685 0.98572 0.97271 0.97940 0.76040 0.75057 0.92492 0.92493 0.92293 0.89015 0.91221 0.91047 0.91673 0.91673 0.91975 0.91875 0.91681 0.91673 0.91050 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.27 17.76 41.84 0.74 -4.52 16 2 C 0.28 3.16 8.92 -22.48 -0.20 2.96 16 3 C -0.19 -2.28 5.61 -106.42 -0.60 -2.88 16 4 C 0.50 6.49 7.75 -155.37 -1.20 5.28 16 5 N -0.83 -8.37 8.96 31.28 0.28 -8.09 16 6 N -0.54 -8.69 9.11 -10.62 -0.10 -8.79 16 7 C 0.25 4.17 7.02 -16.26 -0.11 4.05 16 8 S -0.05 -0.98 20.95 -107.50 -2.25 -3.23 16 9 C 0.07 1.66 4.58 36.01 0.16 1.82 16 10 C -0.53 -13.79 9.13 -34.44 -0.31 -14.11 16 11 H 0.07 1.70 7.71 -52.48 -0.40 1.30 16 12 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 13 N -0.88 -23.99 13.29 55.43 0.74 -23.25 16 14 Si 0.90 20.19 29.54 -169.99 -5.02 15.16 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 C -0.14 -2.09 5.77 -106.42 -0.61 -2.71 16 19 C 0.27 4.22 12.60 -22.45 -0.28 3.93 16 20 N -0.42 -6.95 18.54 41.86 0.78 -6.17 16 21 C 0.12 1.44 4.85 -103.54 -0.50 0.93 16 22 C -0.06 -0.64 2.14 -91.77 -0.20 -0.83 16 23 C -0.12 -1.14 4.97 -26.73 -0.13 -1.27 16 24 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 25 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 26 C -0.12 -0.98 5.92 -26.76 -0.16 -1.14 16 27 C -0.12 -1.14 4.97 -26.76 -0.13 -1.27 16 28 H 0.41 3.35 7.63 -40.82 -0.31 3.03 16 29 H 0.42 4.10 8.95 -40.82 -0.37 3.73 16 30 H 0.06 1.41 8.12 -51.92 -0.42 0.99 16 31 H 0.06 1.41 8.12 -51.91 -0.42 0.99 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.09 1.00 6.57 -51.93 -0.34 0.66 16 34 H 0.07 0.73 5.28 -51.93 -0.27 0.46 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.73 5.28 -51.93 -0.27 0.46 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -27.61 372.07 -9.26 -36.86 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.33 Total: 2.14 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -4.70 Total: -5.72 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 2.44 Total: -50.82 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.25 Total: -3.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.61 -9.26 -36.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020494932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.475 kcal (2) G-P(sol) polarization free energy of solvation -27.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds