Wall clock time and date at job start Tue Mar 31 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35974 * 117.00272 * 2 1 4 4 C 1.38725 * 119.98417 * 179.97438 * 3 2 1 5 5 C 1.38091 * 120.01560 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.97986 * 0.25839 * 5 4 3 7 7 N 1.40056 * 120.01287 * 179.74289 * 6 5 4 8 8 C 1.36616 * 120.00108 * 143.62742 * 7 6 5 9 9 N 1.36566 * 119.99829 * 1.49683 * 8 7 6 10 10 N 1.32300 * 120.00298 * 181.49132 * 8 7 6 11 11 C 1.34110 * 119.99577 * 14.38111 * 10 8 7 12 12 N 1.32411 * 118.82909 * 9.49824 * 11 10 8 13 13 C 1.33651 * 120.94005 * 179.97438 * 12 11 10 14 14 O 1.22038 * 120.64313 * 179.97438 * 13 12 11 15 15 C 1.47933 * 118.70691 * 0.02562 * 13 12 11 16 16 C 1.40896 * 121.04318 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00445 * 145.38430 * 16 15 13 18 18 C 1.39885 * 119.99632 * 325.38505 * 16 15 13 19 19 N 1.30943 * 120.00432 * 340.34594 * 18 16 15 20 20 Si 1.86806 * 120.00061 * 160.34726 * 18 16 15 21 21 H 1.48501 * 109.46952 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47073 * 119.99700 * 20 18 16 23 23 H 1.48503 * 109.47213 * 240.00252 * 20 18 16 24 24 C 1.39375 * 117.92105 * 359.97438 * 15 13 12 25 25 C 1.50698 * 120.56321 * 180.02562 * 24 15 13 26 26 N 1.35162 * 118.87470 * 359.75147 * 24 15 13 27 27 H 0.97005 * 119.39280 * 180.23934 * 26 24 15 28 28 C 1.38861 * 119.97103 * 359.51364 * 6 5 4 29 29 C 1.38090 * 119.97943 * 0.46077 * 28 6 5 30 30 H 1.09001 * 109.47126 * 300.00100 * 1 2 3 31 31 H 1.09005 * 109.46864 * 59.99901 * 1 2 3 32 32 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 33 33 H 1.07998 * 119.98941 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00346 * 179.97438 * 5 4 3 35 35 H 0.97007 * 120.00068 * 323.63638 * 7 6 5 36 36 H 0.97004 * 119.99965 * 352.19231 * 9 8 7 37 37 H 0.96996 * 119.99890 * 172.19525 * 9 8 7 38 38 H 0.96996 * 120.00529 * 179.97438 * 19 18 16 39 39 H 1.09005 * 109.47099 * 90.00439 * 25 24 15 40 40 H 1.09004 * 109.47557 * 210.00299 * 25 24 15 41 41 H 1.08998 * 109.47257 * 330.00131 * 25 24 15 42 42 H 1.07995 * 120.00764 * 180.21148 * 28 6 5 43 43 H 1.08000 * 119.98694 * 179.76863 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0594 2.5137 0.0011 6 6 3.3034 3.6785 0.0065 7 7 3.9392 4.9264 0.0125 8 6 3.4007 5.9708 -0.6843 9 7 2.2263 5.8065 -1.3616 10 7 4.0168 7.1415 -0.7028 11 6 5.2905 7.2353 -0.2935 12 7 5.9688 6.1230 -0.0571 13 6 7.2404 6.1674 0.3518 14 8 7.8604 5.1388 0.5686 15 6 7.8814 7.4877 0.5376 16 6 9.2191 7.5918 0.9675 17 1 9.8444 8.3913 0.5982 18 6 9.7375 6.6597 1.8726 19 7 8.9272 5.9422 2.6097 20 14 11.5857 6.4385 2.0299 21 1 12.2761 7.3610 1.0931 22 1 12.0038 6.7418 3.4221 23 1 11.9464 5.0365 1.6990 24 6 7.1206 8.6254 0.2742 25 6 7.7142 10.0002 0.4433 26 7 5.8431 8.4746 -0.1408 27 1 5.3079 9.2613 -0.3296 28 6 1.9167 3.6055 0.0012 29 6 1.2905 2.3747 0.0001 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.0195 0.3776 0.0005 34 1 5.1379 2.5696 0.0019 35 1 4.7622 5.0490 0.5113 36 1 1.8329 4.9236 -1.4432 37 1 1.7855 6.5727 -1.7611 38 1 9.2866 5.2956 3.2371 39 1 8.1723 10.3159 -0.4941 40 1 6.9286 10.7038 0.7188 41 1 8.4709 9.9753 1.2273 42 1 1.3282 4.5110 0.0019 43 1 0.2120 2.3178 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020503572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:24 Heat of formation + Delta-G solvation = 66.771355 kcal Electronic energy + Delta-G solvation = -29519.167489 eV Core-core repulsion = 25374.298746 eV Total energy + Delta-G solvation = -4144.868743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.68058 -39.73143 -38.72858 -36.94969 -35.92752 -34.23859 -33.25819 -32.99022 -31.32618 -30.94642 -30.35083 -28.78731 -27.41061 -27.07958 -24.62324 -23.14928 -22.75584 -21.84570 -20.69527 -20.30575 -18.49914 -18.06215 -17.99389 -17.41634 -16.58476 -16.27385 -15.91719 -15.68249 -15.51726 -14.93433 -14.78267 -14.48837 -14.44711 -13.84249 -13.70089 -13.39408 -13.22156 -12.76420 -12.73889 -12.63990 -12.21892 -12.08907 -11.91258 -11.62501 -11.41638 -11.24500 -11.17470 -11.03171 -10.85501 -10.68348 -10.21449 -9.93725 -9.58546 -9.46932 -9.17900 -9.12024 -8.82532 -7.91419 -7.43049 -7.38098 -6.80319 -6.44790 -4.05849 1.13209 1.19005 2.03190 2.93011 3.06306 3.14881 3.22492 3.27022 3.35225 3.57242 3.74854 3.97223 4.11277 4.28644 4.59316 4.71381 4.84230 4.88413 5.02300 5.13363 5.19501 5.31792 5.46955 5.66986 5.81641 5.84730 5.91000 6.02112 6.13681 6.22916 6.26507 6.32298 6.49777 6.55341 6.70960 6.79968 6.93882 7.22310 7.24711 7.28879 7.43958 7.66732 7.91496 8.14324 8.39163 8.50475 8.70087 8.97891 9.03033 9.59807 10.09631 10.40988 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003072 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.315465 B = 9111.626169 C =10877.519673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.098 3.902 4 C -0.117 4.117 5 C -0.095 4.095 6 C 0.122 3.878 7 N -0.646 5.646 8 C 0.694 3.306 9 N -0.841 5.841 10 N -0.652 5.652 11 C 0.580 3.420 12 N -0.699 5.699 13 C 0.518 3.482 14 O -0.524 6.524 15 C -0.005 4.005 16 C -0.433 4.433 17 H 0.080 0.920 18 C 0.085 3.915 19 N -0.745 5.745 20 Si 0.906 3.094 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.273 1.273 24 C -0.132 4.132 25 C -0.056 4.056 26 N -0.556 5.556 27 H 0.396 0.604 28 C -0.150 4.150 29 C -0.179 4.179 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.446 0.554 36 H 0.412 0.588 37 H 0.415 0.585 38 H 0.279 0.721 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.139 0.861 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.537 -4.820 -4.809 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.116 4.116 6 C 0.023 3.977 7 N -0.301 5.301 8 C 0.332 3.668 9 N -0.399 5.399 10 N -0.402 5.402 11 C 0.223 3.777 12 N -0.465 5.465 13 C 0.306 3.694 14 O -0.400 6.400 15 C -0.016 4.016 16 C -0.463 4.463 17 H 0.098 0.902 18 C -0.138 4.138 19 N -0.367 5.367 20 Si 0.730 3.270 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.198 1.198 24 C -0.234 4.234 25 C -0.114 4.114 26 N -0.171 5.171 27 H 0.230 0.770 28 C -0.171 4.171 29 C -0.198 4.198 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.312 0.688 36 H 0.250 0.750 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.157 0.843 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.230 -5.794 -4.637 19.683 hybrid contribution 0.914 0.448 0.318 1.067 sum -17.316 -5.346 -4.318 18.630 Atomic orbital electron populations 1.23021 0.78741 1.03749 1.01219 1.86083 1.21060 1.26917 1.89211 1.18960 0.92297 0.84100 0.99409 1.20352 0.91248 0.98333 1.03692 1.21039 1.01160 0.90041 0.99311 1.18120 0.91442 0.87064 1.01052 1.45400 1.30769 1.05599 1.48307 1.18732 0.83672 0.82886 0.81535 1.42523 1.24111 1.14170 1.59056 1.68417 1.08913 1.19106 1.43736 1.19261 0.88036 0.82255 0.88145 1.68467 1.14758 1.23308 1.39984 1.19215 0.83557 0.89557 0.77068 1.90621 1.64199 1.36612 1.48617 1.20141 0.94588 0.90872 0.96014 1.18979 0.95205 1.10653 1.21421 0.90158 1.25753 0.99824 0.93880 0.94390 1.69787 1.37442 1.15527 1.13920 0.86322 0.83080 0.79251 0.78300 1.18592 1.20327 1.19769 1.19880 0.84042 0.96159 1.23367 1.20088 0.99285 0.91166 1.00853 1.40829 1.12223 1.06171 1.57863 0.77029 1.21091 0.93168 0.98122 1.04743 1.21015 0.99795 0.91681 1.07313 0.92748 0.92770 0.88457 0.84691 0.83835 0.68771 0.74963 0.75321 0.91080 0.94296 0.94543 0.90695 0.84345 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.50 -19.66 -0.21 -3.57 16 3 C 0.10 1.12 6.69 -39.22 -0.26 0.86 16 4 C -0.12 -1.48 9.98 -39.46 -0.39 -1.88 16 5 C -0.09 -1.39 9.96 -39.40 -0.39 -1.78 16 6 C 0.12 1.76 6.20 -83.64 -0.52 1.25 16 7 N -0.65 -11.25 4.88 -11.17 -0.05 -11.30 16 8 C 0.69 11.07 8.26 -320.15 -2.64 8.43 16 9 N -0.84 -8.72 7.83 30.13 0.24 -8.48 16 10 N -0.65 -12.01 10.55 -14.64 -0.15 -12.16 16 11 C 0.58 12.95 8.24 -323.45 -2.66 10.29 16 12 N -0.70 -17.70 6.31 -14.28 -0.09 -17.79 16 13 C 0.52 15.15 7.44 -12.79 -0.10 15.05 16 14 O -0.52 -16.73 14.91 4.88 0.07 -16.66 16 15 C 0.00 -0.14 5.55 -104.50 -0.58 -0.72 16 16 C -0.43 -12.03 7.85 -37.96 -0.30 -12.33 16 17 H 0.08 2.10 7.36 -52.49 -0.39 1.71 16 18 C 0.09 2.34 4.64 -17.31 -0.08 2.26 16 19 N -0.74 -21.53 10.99 55.55 0.61 -20.92 16 20 Si 0.91 20.51 29.60 -169.99 -5.03 15.47 16 21 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 C -0.13 -3.12 6.95 -80.70 -0.56 -3.68 16 25 C -0.06 -1.10 9.60 36.00 0.35 -0.75 16 26 N -0.56 -11.77 5.28 -9.50 -0.05 -11.82 16 27 H 0.40 6.97 8.78 -40.82 -0.36 6.62 16 28 C -0.15 -1.65 7.54 -39.41 -0.30 -1.95 16 29 C -0.18 -1.76 9.03 -39.46 -0.36 -2.11 16 30 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 31 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.45 9.54 5.27 -56.28 -0.30 9.24 16 36 H 0.41 3.60 5.00 -40.82 -0.20 3.39 16 37 H 0.42 3.35 8.94 -40.82 -0.37 2.98 16 38 H 0.28 7.46 8.30 -40.82 -0.34 7.12 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.53 7.01 -51.93 -0.36 1.17 16 42 H 0.14 1.26 5.94 -52.49 -0.31 0.95 16 43 H 0.13 0.90 6.29 -52.49 -0.33 0.57 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -35.83 358.66 -11.73 -47.56 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -4.66 Total: 20.17 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: -7.81 Total: 14.10 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: 0.50 Total: -82.48 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.13 Total: -20.22 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.83 -11.73 -47.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020503572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.329 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds