Wall clock time and date at job start Tue Mar 31 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99978 * 2 1 4 4 C 1.38808 * 120.01669 * 359.72289 * 3 2 1 5 5 C 1.38182 * 120.08530 * 179.72185 * 4 3 2 6 6 C 1.38159 * 120.12412 * 0.55126 * 5 4 3 7 7 C 1.38910 * 120.04046 * 359.72816 * 6 5 4 8 8 N 1.39839 * 120.04411 * 179.97438 * 7 6 5 9 9 C 1.36644 * 120.00127 * 327.02145 * 8 7 6 10 10 N 1.36536 * 119.99510 * 359.89413 * 9 8 7 11 11 N 1.32389 * 119.99961 * 179.88241 * 9 8 7 12 12 C 1.33902 * 120.00357 * 17.97282 * 11 9 8 13 13 N 1.32706 * 118.81072 * 7.07294 * 12 11 9 14 14 C 1.31940 * 122.29089 * 179.97438 * 13 12 11 15 15 C 1.50702 * 120.18007 * 179.97438 * 14 13 12 16 16 C 1.40849 * 119.63647 * 359.97438 * 14 13 12 17 17 C 1.40505 * 121.07328 * 179.97438 * 16 14 13 18 18 H 1.08002 * 119.99930 * 40.50478 * 17 16 14 19 19 C 1.39873 * 119.99769 * 220.50756 * 17 16 14 20 20 N 1.30985 * 120.00512 * 9.20094 * 19 17 16 21 21 Si 1.86800 * 119.99680 * 189.20167 * 19 17 16 22 22 H 1.48499 * 109.47276 * 60.00209 * 21 19 17 23 23 H 1.48507 * 109.47186 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47193 * 300.00134 * 21 19 17 25 25 C 1.47413 * 117.85189 * 0.02562 * 16 14 13 26 26 O 1.21765 * 121.05961 * 179.97438 * 25 16 14 27 27 N 1.35156 * 117.88132 * 359.73086 * 25 16 14 28 28 H 0.97000 * 120.02191 * 180.25584 * 27 25 16 29 29 C 1.38571 * 120.01537 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46779 * 60.00312 * 1 2 3 31 31 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47106 * 300.00574 * 1 2 3 33 33 H 1.07998 * 119.96316 * 0.02562 * 4 3 2 34 34 H 1.07995 * 119.93637 * 180.25639 * 5 4 3 35 35 H 1.08002 * 119.97755 * 179.74769 * 6 5 4 36 36 H 0.97000 * 120.00126 * 147.03522 * 8 7 6 37 37 H 0.96997 * 120.00259 * 347.51223 * 10 9 8 38 38 H 0.97005 * 119.99814 * 167.52686 * 10 9 8 39 39 H 1.08996 * 109.47339 * 359.97438 * 15 14 13 40 40 H 1.08997 * 109.47018 * 120.00219 * 15 14 13 41 41 H 1.09003 * 109.46771 * 240.00230 * 15 14 13 42 42 H 0.97000 * 120.00233 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.06842 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3752 -0.0058 5 6 1.9162 3.6072 0.0000 6 6 3.2956 3.6842 0.0001 7 6 4.0569 2.5223 0.0001 8 7 5.4532 2.6002 -0.0004 9 6 6.0799 3.6292 -0.6449 10 7 5.3429 4.5803 -1.2903 11 7 7.4017 3.7042 -0.6433 12 6 8.1332 2.6242 -0.3410 13 7 7.5185 1.4583 -0.1859 14 6 8.1716 0.3512 0.1117 15 6 7.4253 -0.9474 0.2775 16 6 9.5703 0.3898 0.2736 17 6 10.2958 -0.7707 0.5911 18 1 10.0433 -1.7106 0.1228 19 6 11.3452 -0.7088 1.5138 20 7 11.5378 0.3808 2.2148 21 14 12.4722 -2.1803 1.7465 22 1 13.1435 -2.4979 0.4606 23 1 13.4966 -1.8618 2.7735 24 1 11.6731 -3.3507 2.1900 25 6 10.2481 1.6874 0.1003 26 8 11.4549 1.7876 0.2273 27 7 9.4879 2.7612 -0.2090 28 1 9.9022 3.6294 -0.3337 29 6 3.4298 1.2838 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2119 2.3183 -0.0099 34 1 1.3259 4.5116 -0.0004 35 1 3.7823 4.6484 0.0005 36 1 5.9768 1.9235 0.4567 37 1 4.3969 4.4358 -1.4489 38 1 5.7653 5.4003 -1.5903 39 1 6.3608 -0.7780 0.1155 40 1 7.7927 -1.6729 -0.4483 41 1 7.5825 -1.3306 1.2858 42 1 12.2653 0.4236 2.8549 43 1 4.0193 0.3789 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020555599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:29 Heat of formation + Delta-G solvation = 61.202093 kcal Electronic energy + Delta-G solvation = -29580.590736 eV Core-core repulsion = 25435.480491 eV Total energy + Delta-G solvation = -4145.110244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.64552 -39.74434 -38.85672 -37.05472 -35.78605 -34.46156 -33.45542 -32.82741 -32.20281 -30.65695 -29.44980 -28.72685 -27.62064 -27.41046 -24.74431 -22.98271 -22.79252 -21.83313 -20.89793 -20.24566 -18.59886 -18.17278 -17.82940 -16.71315 -16.53678 -16.18206 -15.99931 -15.90190 -15.54769 -15.20110 -15.06306 -14.73379 -14.43966 -13.88630 -13.67805 -13.44142 -13.29527 -12.96981 -12.75014 -12.49124 -12.27446 -12.01678 -11.79325 -11.69123 -11.42941 -11.29280 -11.19473 -11.13695 -11.07470 -10.70823 -10.41564 -10.01515 -9.37693 -9.31631 -8.99831 -8.62136 -8.56048 -8.42120 -8.34926 -7.81636 -6.86101 -6.42448 -4.07190 1.11077 1.28663 1.96861 2.90157 3.02420 3.11703 3.14470 3.22491 3.34190 3.69338 3.76527 3.98325 4.17017 4.34095 4.63368 4.79231 4.87183 4.91084 4.92537 5.06827 5.21921 5.24493 5.41470 5.50368 5.71324 5.74495 5.89840 6.12978 6.19074 6.26959 6.30220 6.39359 6.58292 6.75264 6.82530 6.83774 7.11635 7.25566 7.31242 7.33264 7.48692 7.61161 7.90608 7.99735 8.17480 8.39323 8.64518 8.75113 9.05239 9.58874 9.65712 10.24297 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.003022 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.826072 B = 9262.225392 C =10881.454332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.159 3.841 4 C -0.243 4.243 5 C -0.048 4.048 6 C -0.230 4.230 7 C 0.206 3.794 8 N -0.653 5.653 9 C 0.655 3.345 10 N -0.846 5.846 11 N -0.616 5.616 12 C 0.446 3.554 13 N -0.548 5.548 14 C -0.058 4.058 15 C -0.048 4.048 16 C -0.010 4.010 17 C -0.407 4.407 18 H 0.088 0.912 19 C 0.069 3.931 20 N -0.751 5.751 21 Si 0.917 3.083 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.265 1.265 25 C 0.524 3.476 26 O -0.526 6.526 27 N -0.626 5.626 28 H 0.394 0.606 29 C -0.183 4.183 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.441 0.559 37 H 0.412 0.588 38 H 0.412 0.588 39 H 0.040 0.960 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.283 0.717 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.428 4.881 -3.323 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.112 3.888 4 C -0.263 4.263 5 C -0.067 4.067 6 C -0.251 4.251 7 C 0.104 3.896 8 N -0.304 5.304 9 C 0.293 3.707 10 N -0.406 5.406 11 N -0.360 5.360 12 C 0.095 3.905 13 N -0.278 5.278 14 C -0.181 4.181 15 C -0.106 4.106 16 C -0.020 4.020 17 C -0.436 4.436 18 H 0.106 0.894 19 C -0.154 4.154 20 N -0.373 5.373 21 Si 0.741 3.259 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.190 1.190 25 C 0.319 3.681 26 O -0.401 6.401 27 N -0.272 5.272 28 H 0.230 0.770 29 C -0.206 4.206 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.303 0.697 37 H 0.250 0.750 38 H 0.244 0.756 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.590 4.973 -3.183 21.419 hybrid contribution 0.905 -0.542 0.378 1.121 sum -19.685 4.431 -2.805 20.371 Atomic orbital electron populations 1.23049 0.78445 1.03877 1.01299 1.86101 1.21296 1.26983 1.88415 1.18735 0.91652 0.84126 0.94254 1.21110 0.99822 0.92320 1.13050 1.20727 0.93758 0.96956 0.95269 1.21328 0.94235 0.98044 1.11536 1.17801 0.84730 0.92838 0.94182 1.44917 1.03447 1.29998 1.52045 1.18530 0.86142 0.80850 0.85157 1.42385 1.13188 1.21618 1.63392 1.68200 1.00246 1.25938 1.41631 1.18670 0.81881 0.87573 1.02406 1.66505 1.37000 0.98690 1.25622 1.20413 0.90045 0.92457 1.15167 1.19950 0.96847 0.93229 1.00567 1.19974 0.91622 0.91649 0.98709 1.19071 1.11382 0.94995 1.18192 0.89415 1.25943 0.97050 0.97208 0.95151 1.69780 1.26112 1.26323 1.15053 0.86225 0.79621 0.81070 0.78951 1.18899 1.20346 1.18952 1.19375 0.86867 0.84301 0.77600 1.90721 1.13508 1.84494 1.51381 1.44023 1.06383 1.12977 1.63838 0.77000 1.20150 0.91677 0.97891 1.10837 0.92658 0.88318 0.92640 0.85672 0.85555 0.84103 0.69667 0.75037 0.75629 0.94064 0.93499 0.92743 0.90663 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.55 10.49 -19.43 -0.20 -3.75 16 3 C 0.16 1.87 6.68 -39.25 -0.26 1.61 16 4 C -0.24 -2.29 9.04 -39.39 -0.36 -2.65 16 5 C -0.05 -0.42 10.03 -39.63 -0.40 -0.82 16 6 C -0.23 -2.41 7.55 -39.36 -0.30 -2.70 16 7 C 0.21 2.77 6.24 -83.74 -0.52 2.25 16 8 N -0.65 -10.57 4.88 -11.20 -0.05 -10.63 16 9 C 0.65 10.51 8.22 -320.04 -2.63 7.88 16 10 N -0.85 -9.21 7.58 30.14 0.23 -8.98 16 11 N -0.62 -11.91 10.56 -14.54 -0.15 -12.06 16 12 C 0.45 10.15 8.25 -322.99 -2.66 7.48 16 13 N -0.55 -12.45 6.11 -9.70 -0.06 -12.51 16 14 C -0.06 -1.40 6.89 -81.56 -0.56 -1.97 16 15 C -0.05 -1.00 9.26 36.01 0.33 -0.66 16 16 C -0.01 -0.27 5.53 -104.32 -0.58 -0.85 16 17 C -0.41 -10.91 8.18 -38.12 -0.31 -11.22 16 18 H 0.09 2.20 7.50 -52.49 -0.39 1.80 16 19 C 0.07 1.82 4.93 -17.30 -0.09 1.73 16 20 N -0.75 -20.95 10.78 55.55 0.60 -20.35 16 21 Si 0.92 19.64 29.57 -169.99 -5.03 14.61 16 22 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 C 0.52 14.52 7.42 -12.35 -0.09 14.43 16 26 O -0.53 -15.81 15.06 5.13 0.08 -15.73 16 27 N -0.63 -15.05 5.34 -14.07 -0.08 -15.13 16 28 H 0.39 8.65 8.91 -40.82 -0.36 8.28 16 29 C -0.18 -2.50 9.90 -39.24 -0.39 -2.88 16 30 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 33 H 0.13 0.87 6.29 -52.49 -0.33 0.54 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.14 1.29 5.76 -52.49 -0.30 0.99 16 36 H 0.44 8.32 5.36 -51.16 -0.27 8.04 16 37 H 0.41 3.71 5.21 -40.82 -0.21 3.50 16 38 H 0.41 3.71 8.95 -40.82 -0.37 3.35 16 39 H 0.04 0.76 8.12 -51.93 -0.42 0.33 16 40 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.28 7.31 8.30 -40.82 -0.34 6.98 16 43 H 0.14 2.01 8.06 -52.48 -0.42 1.58 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -33.46 359.67 -11.77 -45.22 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -4.70 Total: 21.07 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: -7.82 Total: 12.81 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: 0.48 Total: -79.65 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.13 Total: -19.48 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.46 -11.77 -45.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020555599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.426 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds