Wall clock time and date at job start Tue Mar 31 2020 06:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35978 * 116.99531 * 2 1 4 4 C 1.38537 * 120.08761 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.01888 * 180.02562 * 4 3 2 6 6 C 1.38280 * 120.18620 * 359.96061 * 5 4 3 7 7 C 1.38190 * 120.16268 * 0.02562 * 6 5 4 8 8 C 1.38749 * 119.98671 * 359.97438 * 7 6 5 9 9 N 1.40041 * 120.09850 * 179.72638 * 8 7 6 10 10 C 1.36584 * 119.99742 * 332.90200 * 9 8 7 11 11 N 1.36561 * 119.99718 * 355.04334 * 10 9 8 12 12 N 1.32410 * 119.99874 * 175.04850 * 10 9 8 13 13 C 1.33881 * 120.00179 * 19.56207 * 12 10 9 14 14 N 1.32715 * 118.81569 * 8.13415 * 13 12 10 15 15 C 1.31936 * 122.28994 * 179.97438 * 14 13 12 16 16 C 1.50706 * 120.17637 * 179.97438 * 15 14 13 17 17 C 1.40852 * 119.64312 * 359.97438 * 15 14 13 18 18 C 1.40503 * 121.07336 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00118 * 39.18233 * 18 17 15 20 20 C 1.39873 * 119.99845 * 219.18219 * 18 17 15 21 21 N 1.30991 * 120.00044 * 14.53916 * 20 18 17 22 22 Si 1.86800 * 119.99899 * 194.54259 * 20 18 17 23 23 H 1.48501 * 109.47050 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47061 * 119.99653 * 22 20 18 25 25 H 1.48492 * 109.47078 * 239.99987 * 22 20 18 26 26 C 1.47413 * 117.84828 * 0.02562 * 17 15 14 27 27 O 1.21757 * 121.05610 * 179.97438 * 26 17 15 28 28 N 1.35159 * 117.88223 * 359.74352 * 26 17 15 29 29 H 0.97000 * 120.01634 * 180.26956 * 28 26 17 30 30 H 1.09000 * 109.47302 * 60.00606 * 1 2 3 31 31 H 1.09005 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47309 * 300.00043 * 1 2 3 33 33 H 1.08010 * 119.98812 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.91075 * 179.97438 * 5 4 3 35 35 H 1.07996 * 119.92020 * 180.02562 * 6 5 4 36 36 H 1.08005 * 120.01232 * 179.97438 * 7 6 5 37 37 H 0.96993 * 120.00233 * 152.89333 * 9 8 7 38 38 H 0.96993 * 120.00399 * 342.47921 * 11 10 9 39 39 H 0.96999 * 119.99532 * 162.48290 * 11 10 9 40 40 H 1.08996 * 109.47074 * 359.97438 * 16 15 14 41 41 H 1.09004 * 109.46942 * 119.99898 * 16 15 14 42 42 H 1.08996 * 109.47033 * 239.99688 * 16 15 14 43 43 H 0.97000 * 119.99846 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9224 3.6056 -0.0011 6 6 3.3032 3.6810 -0.0003 7 6 4.0615 2.5258 0.0006 8 6 3.4375 1.2865 0.0011 9 7 4.2038 0.1144 -0.0038 10 6 5.4566 0.1198 -0.5477 11 7 5.9231 1.2387 -1.1765 12 7 6.2188 -0.9598 -0.4654 13 6 5.6646 -2.1532 -0.2185 14 7 4.3416 -2.2572 -0.2222 15 6 3.7237 -3.3992 0.0117 16 6 2.2180 -3.4630 -0.0037 17 6 4.4788 -4.5585 0.2760 18 6 3.8520 -5.7901 0.5297 19 1 2.9733 -6.0743 -0.0303 20 6 4.3659 -6.6481 1.5075 21 7 5.2401 -6.2029 2.3755 22 14 3.8057 -8.4288 1.5754 23 1 2.8204 -8.6794 0.4930 24 1 4.9773 -9.3235 1.3957 25 1 3.1738 -8.6990 2.8917 26 6 5.9480 -4.4375 0.2790 27 8 6.6572 -5.4020 0.5010 28 7 6.4827 -3.2229 0.0228 29 1 7.4459 -3.1090 0.0132 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.2147 2.3194 -0.0005 34 1 1.3338 4.5112 -0.0019 35 1 3.7901 4.6449 -0.0003 36 1 5.1398 2.5874 0.0008 37 1 3.8448 -0.7013 0.3790 38 1 5.3036 1.9277 -1.4634 39 1 6.8740 1.3444 -1.3361 40 1 1.8148 -2.4746 -0.2239 41 1 1.8921 -4.1675 -0.7689 42 1 1.8584 -3.7929 0.9709 43 1 5.5968 -6.7981 3.0534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020555611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:34 Heat of formation + Delta-G solvation = 62.001900 kcal Electronic energy + Delta-G solvation = -30311.375900 eV Core-core repulsion = 26166.300338 eV Total energy + Delta-G solvation = -4145.075562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.68671 -39.57687 -38.46250 -37.10869 -35.83291 -34.45223 -33.41839 -32.80170 -32.24592 -30.18466 -29.40901 -28.95696 -27.55992 -27.16776 -24.71400 -23.01790 -22.46724 -21.91339 -20.86860 -20.12561 -18.50750 -18.03698 -17.78636 -17.07579 -16.57564 -16.12555 -15.76855 -15.70248 -15.45691 -15.02538 -14.82314 -14.59005 -14.31302 -14.17283 -13.70192 -13.42458 -13.18031 -12.95769 -12.66632 -12.24275 -12.20050 -11.86975 -11.72447 -11.56447 -11.26337 -11.20765 -11.15915 -11.13105 -11.09530 -10.68343 -10.34507 -10.08790 -9.35897 -9.22349 -8.95173 -8.69026 -8.54940 -8.37081 -8.30694 -7.50948 -6.86959 -6.40749 -4.01787 1.10799 1.31216 2.02043 2.96422 3.13542 3.17366 3.19420 3.26666 3.36517 3.72431 3.77881 3.99626 4.19998 4.37204 4.72516 4.79840 4.84340 5.02428 5.14452 5.16362 5.29467 5.44430 5.52375 5.55416 5.63712 5.81131 5.89066 6.10067 6.17627 6.31185 6.41139 6.59847 6.71753 6.79749 6.81147 6.89234 7.13259 7.33703 7.36096 7.42596 7.54886 7.67659 7.96903 8.04618 8.21303 8.48766 8.67974 8.77258 9.11171 9.66569 9.67654 10.24087 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015870 B = 0.003481 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.914114 B = 8040.933212 C = 9502.866205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.299 6.299 3 C 0.096 3.904 4 C -0.180 4.180 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.164 4.164 8 C 0.139 3.861 9 N -0.644 5.644 10 C 0.652 3.348 11 N -0.849 5.849 12 N -0.617 5.617 13 C 0.441 3.559 14 N -0.540 5.540 15 C -0.053 4.053 16 C -0.050 4.050 17 C -0.013 4.013 18 C -0.406 4.406 19 H 0.089 0.911 20 C 0.073 3.927 21 N -0.750 5.750 22 Si 0.913 3.087 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 C 0.525 3.475 27 O -0.532 6.532 28 N -0.625 5.625 29 H 0.394 0.606 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.150 0.850 37 H 0.444 0.556 38 H 0.411 0.589 39 H 0.412 0.588 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 18.892 -3.825 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.212 6.212 3 C 0.048 3.952 4 C -0.200 4.200 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.186 4.186 8 C 0.038 3.962 9 N -0.295 5.295 10 C 0.291 3.709 11 N -0.408 5.408 12 N -0.361 5.361 13 C 0.090 3.910 14 N -0.270 5.270 15 C -0.177 4.177 16 C -0.107 4.107 17 C -0.022 4.022 18 C -0.436 4.436 19 H 0.107 0.893 20 C -0.150 4.150 21 N -0.372 5.372 22 Si 0.737 3.263 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.201 1.201 26 C 0.319 3.681 27 O -0.409 6.409 28 N -0.271 5.271 29 H 0.229 0.771 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.167 0.833 37 H 0.306 0.694 38 H 0.248 0.752 39 H 0.244 0.756 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.757 18.201 -3.621 19.749 hybrid contribution -0.229 -1.204 0.366 1.279 sum -6.987 16.997 -3.255 18.663 Atomic orbital electron populations 1.23054 0.78643 1.04242 1.00712 1.86243 1.20964 1.25518 1.88449 1.18815 0.90704 0.85306 1.00421 1.21096 0.99860 0.91910 1.07085 1.20816 0.94657 0.96757 1.01515 1.20876 0.93713 0.97759 1.01994 1.21410 1.01326 0.90449 1.05434 1.17570 0.88047 0.88248 1.02366 1.44792 1.14308 1.13491 1.56896 1.18515 0.79871 0.86843 0.85702 1.42253 1.12216 1.21842 1.64501 1.68155 1.30997 0.95444 1.41514 1.18692 0.84349 0.85252 1.02754 1.66548 1.05375 1.29119 1.26001 1.20392 0.94724 0.86993 1.15578 1.19972 0.90908 0.99715 1.00149 1.19994 0.88704 0.94572 0.98925 1.19119 1.10304 0.99578 1.14557 0.89325 1.25912 0.93681 1.00694 0.94697 1.69780 1.19609 1.37598 1.10175 0.86184 0.79344 0.81882 0.78849 1.18346 1.19721 1.20053 1.19342 0.90562 0.80510 0.77683 1.90711 1.63388 1.36722 1.50035 1.43991 1.10190 1.08991 1.63971 0.77056 0.92954 0.87959 0.92960 0.85339 0.86069 0.85772 0.83292 0.69410 0.75213 0.75637 0.93095 0.93899 0.93084 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.32 9.09 -19.67 -0.18 -4.50 16 3 C 0.10 1.30 6.70 -39.07 -0.26 1.04 16 4 C -0.18 -1.88 9.04 -39.47 -0.36 -2.23 16 5 C -0.12 -1.06 10.04 -39.56 -0.40 -1.46 16 6 C -0.12 -1.11 10.04 -39.58 -0.40 -1.50 16 7 C -0.16 -1.77 7.60 -39.41 -0.30 -2.07 16 8 C 0.14 1.95 6.33 -83.51 -0.53 1.42 16 9 N -0.64 -11.04 4.88 -11.08 -0.05 -11.09 16 10 C 0.65 10.86 8.18 -320.06 -2.62 8.24 16 11 N -0.85 -9.46 7.19 30.14 0.22 -9.25 16 12 N -0.62 -12.28 10.56 -14.54 -0.15 -12.43 16 13 C 0.44 10.30 8.23 -323.00 -2.66 7.64 16 14 N -0.54 -12.69 6.17 -9.70 -0.06 -12.75 16 15 C -0.05 -1.32 6.89 -81.56 -0.56 -1.89 16 16 C -0.05 -1.05 9.24 36.01 0.33 -0.72 16 17 C -0.01 -0.34 5.52 -104.32 -0.58 -0.92 16 18 C -0.41 -10.99 8.19 -38.12 -0.31 -11.30 16 19 H 0.09 2.25 7.48 -52.49 -0.39 1.86 16 20 C 0.07 1.93 4.78 -17.30 -0.08 1.85 16 21 N -0.75 -21.04 11.04 55.55 0.61 -20.42 16 22 Si 0.91 19.76 29.59 -169.99 -5.03 14.73 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 C 0.52 14.72 7.44 -12.35 -0.09 14.63 16 27 O -0.53 -16.15 15.16 5.14 0.08 -16.08 16 28 N -0.63 -15.32 5.34 -14.07 -0.08 -15.40 16 29 H 0.39 8.80 8.91 -40.82 -0.36 8.44 16 30 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 33 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.15 1.40 5.51 -52.48 -0.29 1.11 16 37 H 0.44 8.93 4.91 -49.68 -0.24 8.68 16 38 H 0.41 3.79 5.63 -40.82 -0.23 3.56 16 39 H 0.41 3.76 8.95 -40.82 -0.37 3.40 16 40 H 0.05 0.98 7.24 -51.93 -0.38 0.60 16 41 H 0.04 0.86 7.93 -51.93 -0.41 0.45 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.28 7.29 8.30 -40.82 -0.34 6.95 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -34.33 357.25 -11.70 -46.03 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -4.62 Total: 21.78 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: -7.82 Total: 14.00 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: 0.49 Total: -81.34 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.10 Total: -20.58 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.33 -11.70 -46.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020555611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.028 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds