Wall clock time and date at job start Tue Mar 31 2020 07:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99975 * 2 1 4 4 H 1.48497 * 109.47288 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.47397 * 30.00467 * 3 2 1 6 6 H 1.48501 * 109.46823 * 150.00148 * 3 2 1 7 7 C 1.37873 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00367 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99580 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46864 * 179.97438 * 9 7 2 11 11 C 1.46948 * 111.00211 * 293.80261 * 10 9 7 12 12 C 1.53051 * 109.36370 * 176.81448 * 11 10 9 13 13 N 1.46956 * 109.36859 * 58.39802 * 12 11 10 14 14 C 1.46894 * 111.00115 * 176.81434 * 13 12 11 15 15 H 1.09004 * 109.47122 * 181.16431 * 14 13 12 16 16 C 1.50698 * 109.47622 * 61.16656 * 14 13 12 17 17 O 1.20832 * 119.99357 * 359.97438 * 16 14 13 18 18 O 1.34226 * 120.00733 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.47493 * 301.16190 * 14 13 12 20 20 C 1.34240 * 126.50241 * 104.22014 * 19 14 13 21 21 N 1.36827 * 109.93516 * 180.02562 * 20 19 14 22 22 H 0.96995 * 125.06809 * 180.02562 * 21 20 19 23 23 C 1.37694 * 109.86940 * 0.02562 * 21 20 19 24 24 C 1.39128 * 133.50437 * 180.02562 * 23 21 20 25 25 C 1.37745 * 119.77978 * 179.97438 * 24 23 21 26 26 C 1.38831 * 120.66321 * 0.02562 * 25 24 23 27 27 C 1.36624 * 120.53104 * 359.97438 * 26 25 24 28 28 C 1.39633 * 119.76643 * 359.70068 * 27 26 25 29 29 C 1.46960 * 110.87894 * 300.68322 * 13 12 11 30 30 C 1.46954 * 110.99601 * 169.99643 * 10 9 7 31 31 H 0.96999 * 119.99541 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47030 * 59.99936 * 9 7 2 33 33 H 1.08995 * 109.47149 * 299.99612 * 9 7 2 34 34 H 1.09006 * 109.48961 * 296.77764 * 11 10 9 35 35 H 1.08997 * 109.49296 * 56.84477 * 11 10 9 36 36 H 1.09004 * 109.48679 * 298.43102 * 12 11 10 37 37 H 1.09004 * 109.50914 * 178.38069 * 12 11 10 38 38 H 0.96701 * 117.00199 * 179.97438 * 18 16 14 39 39 H 1.08009 * 125.03247 * 0.02562 * 20 19 14 40 40 H 1.08001 * 120.10708 * 359.95817 * 24 23 21 41 41 H 1.08000 * 119.66675 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.73336 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.12054 * 180.02562 * 27 26 25 44 44 H 1.08999 * 109.48605 * 299.35122 * 29 13 12 45 45 H 1.08996 * 109.50644 * 179.30173 * 29 13 12 46 46 H 1.08993 * 109.49387 * 303.16046 * 30 10 9 47 47 H 1.09006 * 109.48823 * 63.20569 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5792 -0.0010 11 6 3.6552 -3.2600 1.2545 12 6 4.1114 -4.7191 1.1829 13 7 5.5607 -4.7654 0.9441 14 6 6.0503 -6.1504 0.9442 15 1 7.1288 -6.1545 0.7859 16 6 5.3774 -6.9212 -0.1622 17 8 4.5721 -6.3730 -0.8771 18 8 5.6725 -8.2165 -0.3535 19 6 5.7347 -6.7948 2.2693 20 6 4.7609 -7.6864 2.5119 21 7 4.7775 -8.0479 3.8314 22 1 4.1684 -8.6803 4.2437 23 6 5.7877 -7.3802 4.4869 24 6 6.2361 -7.3765 5.8040 25 6 7.3005 -6.5788 6.1620 26 6 7.9319 -5.7765 5.2213 27 6 7.5080 -5.7647 3.9225 28 6 6.4352 -6.5706 3.5361 29 6 5.9067 -4.0845 -0.3114 30 6 5.4504 -2.6254 -0.2399 31 1 -0.4849 0.8401 0.0004 32 1 3.8752 -0.6805 0.8888 33 1 3.8745 -0.6802 -0.8911 34 1 4.1539 -2.7634 2.0869 35 1 2.5759 -3.2233 1.4026 36 1 3.5923 -5.2229 0.3675 37 1 3.8818 -5.2189 2.1240 38 1 5.2150 -8.6691 -1.0754 39 1 4.0671 -8.0628 1.7746 40 1 5.7510 -7.9967 6.5432 41 1 7.6468 -6.5770 7.1850 42 1 8.7649 -5.1566 5.5186 43 1 8.0043 -5.1383 3.1961 44 1 5.4079 -4.5811 -1.1437 45 1 6.9859 -4.1213 -0.4600 46 1 5.6800 -2.1260 -1.1811 47 1 5.9696 -2.1213 0.5753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020745403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:45 Heat of formation + Delta-G solvation = 3.908862 kcal Electronic energy + Delta-G solvation = -30698.681369 eV Core-core repulsion = 26654.627047 eV Total energy + Delta-G solvation = -4044.054322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.70282 -40.56730 -38.40465 -37.04715 -36.25621 -35.19236 -32.78635 -31.97949 -30.45061 -30.13418 -29.44251 -28.34119 -26.66881 -24.30642 -23.15696 -22.92722 -22.33522 -21.67956 -20.97322 -19.60127 -19.27059 -18.21838 -17.91903 -16.85856 -16.76977 -16.32929 -15.71031 -15.65943 -15.45344 -14.76970 -14.48351 -14.33750 -14.21458 -14.10523 -13.87799 -13.75315 -13.54156 -13.27822 -12.92732 -12.51094 -12.32857 -12.12972 -11.88186 -11.78449 -11.73144 -11.69574 -11.40579 -11.08508 -10.88365 -10.79516 -10.56084 -10.42976 -10.34401 -10.00863 -9.80033 -9.71481 -9.19775 -8.51372 -8.35248 -8.18035 -7.80577 -7.23418 -5.99799 -3.96425 1.00415 1.52213 2.05826 2.41386 2.86444 2.97411 3.32818 3.39791 3.42903 3.78768 4.06713 4.47256 4.56904 4.59279 4.71315 4.87103 4.96843 5.04320 5.06397 5.13109 5.31227 5.32793 5.40980 5.51400 5.58786 5.64468 5.72243 5.78014 5.89933 5.96678 6.01926 6.09486 6.23950 6.32610 6.37193 6.45289 6.48826 6.53329 6.59750 6.68752 6.73654 6.91295 7.01378 7.04080 7.06815 7.24113 7.31267 7.67121 7.81136 8.00864 8.15204 8.73356 9.09249 9.62447 11.13451 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.003221 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.910169 B = 8690.090634 C = 9657.162143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.072 3.928 12 C 0.041 3.959 13 N -0.497 5.497 14 C 0.173 3.827 15 H 0.122 0.878 16 C 0.443 3.557 17 O -0.490 6.490 18 O -0.519 6.519 19 C -0.154 4.154 20 C 0.070 3.930 21 N -0.591 5.591 22 H 0.417 0.583 23 C 0.095 3.905 24 C -0.133 4.133 25 C -0.099 4.099 26 C -0.149 4.149 27 C -0.058 4.058 28 C -0.080 4.080 29 C 0.040 3.960 30 C 0.059 3.941 31 H 0.263 0.737 32 H -0.012 1.012 33 H 0.023 0.977 34 H 0.026 0.974 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.402 0.598 39 H 0.163 0.837 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.574 -19.812 8.438 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.544 4.544 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.251 5.251 11 C -0.056 4.056 12 C -0.086 4.086 13 N -0.221 5.221 14 C 0.062 3.938 15 H 0.140 0.860 16 C 0.283 3.717 17 O -0.377 6.377 18 O -0.330 6.330 19 C -0.162 4.162 20 C -0.058 4.058 21 N -0.194 5.194 22 H 0.254 0.746 23 C -0.011 4.011 24 C -0.153 4.153 25 C -0.118 4.118 26 C -0.168 4.168 27 C -0.077 4.077 28 C -0.084 4.084 29 C -0.087 4.087 30 C -0.070 4.070 31 H 0.072 0.928 32 H 0.006 0.994 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.260 0.740 39 H 0.180 0.820 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 16.289 -19.389 8.580 26.737 hybrid contribution -0.344 0.385 -0.365 0.632 sum 15.945 -19.003 8.215 26.131 Atomic orbital electron populations 1.69903 1.06117 1.26727 1.51401 1.24898 0.94730 0.98825 0.94932 0.86858 0.80340 0.84023 0.78534 1.20202 1.21275 1.19241 1.21048 0.88800 0.94668 1.49930 0.90204 1.20151 0.97013 0.84221 0.94993 1.62071 1.10309 1.18820 1.33866 1.21957 1.01602 0.91567 0.90477 1.22543 0.86051 0.98732 1.01281 1.62784 1.16526 1.08684 1.34118 1.19814 1.00408 0.86734 0.86888 0.86045 1.25400 0.80473 0.80397 0.85473 1.90774 1.32170 1.68727 1.46037 1.84655 1.67124 1.25894 1.55314 1.19358 1.00576 1.03349 0.92948 1.21511 0.99890 0.99115 0.85278 1.41653 1.29828 1.39967 1.07922 0.74645 1.18246 0.91835 0.97079 0.93976 1.19981 0.99652 1.03278 0.92413 1.20791 0.95452 0.96263 0.99332 1.20639 1.01598 1.01300 0.93264 1.20316 0.94697 0.96550 0.96115 1.18791 0.98087 0.99755 0.91816 1.22482 0.99477 0.95577 0.91183 1.22045 0.90271 0.94385 1.00327 0.92760 0.99385 0.95872 0.95553 0.89194 0.91247 0.91234 0.73970 0.81963 0.86433 0.85957 0.86116 0.85740 0.91229 0.91359 0.90970 0.95254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.51 -14.81 9.03 -34.44 -0.31 -15.12 16 8 H 0.08 2.54 7.38 -52.49 -0.39 2.16 16 9 C 0.16 4.11 3.79 -4.97 -0.02 4.09 16 10 N -0.53 -11.69 4.70 -235.91 -1.11 -12.80 16 11 C 0.07 1.50 5.43 -3.77 -0.02 1.48 16 12 C 0.04 0.71 4.97 -3.77 -0.02 0.69 16 13 N -0.50 -7.40 4.71 -229.28 -1.08 -8.48 16 14 C 0.17 2.10 2.84 -70.02 -0.20 1.90 16 15 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 16 C 0.44 5.36 6.00 36.00 0.22 5.58 16 17 O -0.49 -7.69 12.33 -18.75 -0.23 -7.92 16 18 O -0.52 -4.64 12.97 -39.25 -0.51 -5.14 16 19 C -0.15 -1.81 4.30 -102.71 -0.44 -2.25 16 20 C 0.07 0.71 10.17 -16.73 -0.17 0.54 16 21 N -0.59 -5.32 6.07 -10.65 -0.06 -5.38 16 22 H 0.42 2.45 8.96 -40.82 -0.37 2.08 16 23 C 0.10 1.03 7.28 -83.98 -0.61 0.42 16 24 C -0.13 -1.25 10.08 -39.43 -0.40 -1.65 16 25 C -0.10 -0.90 10.01 -39.54 -0.40 -1.30 16 26 C -0.15 -1.46 9.97 -39.95 -0.40 -1.85 16 27 C -0.06 -0.65 10.05 -39.64 -0.40 -1.05 16 28 C -0.08 -0.96 6.35 -105.14 -0.67 -1.63 16 29 C 0.04 0.62 5.25 -3.76 -0.02 0.60 16 30 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H -0.01 -0.30 7.18 -51.93 -0.37 -0.67 16 33 H 0.02 0.58 7.45 -51.93 -0.39 0.20 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 2.06 6.79 -51.93 -0.35 1.71 16 36 H 0.07 1.31 5.54 -51.93 -0.29 1.02 16 37 H 0.07 1.13 6.54 -51.93 -0.34 0.79 16 38 H 0.40 2.06 9.10 45.56 0.41 2.48 16 39 H 0.16 1.43 7.44 -52.48 -0.39 1.04 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.07 1.20 5.66 -51.93 -0.29 0.91 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -35.47 372.76 -10.97 -46.44 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.73 Total: 4.30 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.97 Total: -6.60 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -1.48 Total: -54.05 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.74 Total: -13.07 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.47 -10.97 -46.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020745403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.353 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds