Wall clock time and date at job start Tue Mar 31 2020 07:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48503 * 109.46897 * 269.99999 * 3 2 1 5 5 H 1.48497 * 109.47021 * 30.00135 * 3 2 1 6 6 H 1.48501 * 109.46789 * 150.00236 * 3 2 1 7 7 C 1.37883 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99801 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99884 * 0.02562 * 7 2 1 10 10 N 1.46909 * 109.46773 * 185.01026 * 9 7 2 11 11 C 1.46957 * 110.99674 * 295.18076 * 10 9 7 12 12 C 1.53048 * 109.36157 * 183.19167 * 11 10 9 13 13 N 1.46953 * 109.36526 * 301.59420 * 12 11 10 14 14 C 1.46893 * 111.00572 * 183.19126 * 13 12 11 15 15 H 1.09000 * 109.47139 * 299.99889 * 14 13 12 16 16 C 1.50708 * 109.47227 * 59.99798 * 14 13 12 17 17 O 1.20819 * 119.99732 * 0.02562 * 16 14 13 18 18 O 1.34226 * 119.99996 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47573 * 180.02562 * 14 13 12 20 20 C 1.34242 * 126.50209 * 340.02142 * 19 14 13 21 21 N 1.36825 * 109.93113 * 180.02562 * 20 19 14 22 22 H 0.96995 * 125.05906 * 180.02562 * 21 20 19 23 23 C 1.37684 * 109.87643 * 0.02562 * 21 20 19 24 24 C 1.39119 * 133.50796 * 180.02562 * 23 21 20 25 25 C 1.37748 * 119.78271 * 179.97438 * 24 23 21 26 26 C 1.38835 * 120.66136 * 359.97438 * 25 24 23 27 27 C 1.36625 * 120.53249 * 0.02562 * 26 25 24 28 28 C 1.39632 * 119.76223 * 359.68883 * 27 26 25 29 29 C 1.46962 * 110.87996 * 59.32033 * 13 12 11 30 30 C 1.46952 * 110.99722 * 58.97583 * 10 9 7 31 31 H 0.96996 * 120.00352 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47424 * 65.01062 * 9 7 2 33 33 H 1.09000 * 109.47033 * 305.00622 * 9 7 2 34 34 H 1.08998 * 109.49455 * 63.21987 * 11 10 9 35 35 H 1.09006 * 109.48720 * 303.15606 * 11 10 9 36 36 H 1.08999 * 109.49079 * 181.63032 * 12 11 10 37 37 H 1.09004 * 109.51018 * 61.57683 * 12 11 10 38 38 H 0.96696 * 116.99990 * 179.97438 * 18 16 14 39 39 H 1.08001 * 125.03078 * 0.02562 * 20 19 14 40 40 H 1.08000 * 120.10940 * 359.96025 * 24 23 21 41 41 H 1.07996 * 119.67026 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.73431 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.11710 * 180.02562 * 27 26 25 44 44 H 1.08999 * 109.48416 * 60.65043 * 29 13 12 45 45 H 1.08998 * 109.49139 * 180.71487 * 29 13 12 46 46 H 1.09002 * 109.49247 * 296.77873 * 30 10 9 47 47 H 1.08998 * 109.49215 * 56.84770 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2009 -3.6131 0.1221 11 6 3.0789 -3.6872 -1.0540 12 6 3.9975 -4.9046 -0.9257 13 7 4.7853 -4.7925 0.3097 14 6 5.7353 -5.9063 0.4313 15 1 5.1891 -6.8494 0.4496 16 6 6.6771 -5.8940 -0.7452 17 8 6.5683 -5.0443 -1.5972 18 8 7.6367 -6.8271 -0.8465 19 6 6.5229 -5.7578 1.7075 20 6 6.6864 -4.6309 2.4185 21 7 7.4641 -4.8807 3.5162 22 1 7.7197 -4.2210 4.1797 23 6 7.8298 -6.2079 3.5386 24 6 8.5968 -6.9754 4.4092 25 6 8.7858 -8.3159 4.1543 26 6 8.2177 -8.9109 3.0360 27 6 7.4608 -8.1760 2.1678 28 6 7.2514 -6.8169 2.4101 29 6 3.9074 -4.7183 1.4859 30 6 2.9887 -3.5008 1.3575 31 1 -0.4850 0.8400 0.0004 32 1 0.6936 -2.5970 -0.9311 33 1 0.5584 -2.5188 0.8420 34 1 3.6820 -2.7814 -1.1153 35 1 2.4726 -3.7824 -1.9549 36 1 4.6694 -4.9452 -1.7830 37 1 3.3956 -5.8128 -0.8921 38 1 8.2164 -6.7786 -1.6189 39 1 6.2662 -3.6697 2.1620 40 1 9.0428 -6.5218 5.2820 41 1 9.3819 -8.9099 4.8312 42 1 8.3759 -9.9630 2.8504 43 1 7.0217 -8.6458 1.3002 44 1 3.3043 -5.6242 1.5472 45 1 4.5136 -4.6230 2.3868 46 1 3.5909 -2.5929 1.3237 47 1 2.3169 -3.4603 2.2149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020745404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:49 Heat of formation + Delta-G solvation = -0.307366 kcal Electronic energy + Delta-G solvation = -30602.802295 eV Core-core repulsion = 26558.565143 eV Total energy + Delta-G solvation = -4044.237151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61706 -40.27451 -38.51506 -37.04886 -36.13251 -35.25488 -32.80323 -31.95033 -30.38785 -30.03771 -29.32769 -27.93677 -26.46072 -24.39769 -23.17804 -22.78002 -21.93818 -21.85925 -21.39201 -19.61184 -19.06740 -18.11106 -17.82619 -16.70724 -16.54606 -16.28876 -15.84849 -15.41484 -15.32892 -14.62897 -14.58983 -14.22930 -14.16975 -14.07201 -13.94729 -13.83983 -13.43459 -13.02837 -12.79475 -12.59410 -12.29969 -11.98165 -11.89777 -11.74541 -11.64371 -11.32896 -11.10641 -11.05310 -10.93681 -10.82860 -10.51318 -10.46411 -10.20836 -10.01591 -9.77531 -9.61149 -9.44101 -8.40861 -8.34443 -8.17390 -7.79712 -7.13428 -6.00123 -4.08813 0.99505 1.48438 2.16130 2.50936 2.97937 2.99320 3.29227 3.35936 3.39071 3.78255 4.04966 4.42974 4.58304 4.68451 4.84387 4.93620 5.09056 5.11702 5.17192 5.24502 5.30301 5.34378 5.48249 5.50531 5.64344 5.65778 5.74459 5.87521 5.94311 5.95397 6.00921 6.19177 6.31190 6.33224 6.47285 6.51991 6.55409 6.61438 6.68954 6.81307 6.88583 6.99742 7.19254 7.20897 7.35815 7.38546 7.55655 7.92988 7.97534 8.08845 8.32111 8.33198 9.02197 9.57904 11.04899 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015729 B = 0.002966 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.750987 B = 9439.178831 C =10116.462294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.187 3.813 10 N -0.545 5.545 11 C 0.068 3.932 12 C 0.046 3.954 13 N -0.518 5.518 14 C 0.176 3.824 15 H 0.080 0.920 16 C 0.487 3.513 17 O -0.492 6.492 18 O -0.513 6.513 19 C -0.179 4.179 20 C 0.095 3.905 21 N -0.594 5.594 22 H 0.418 0.582 23 C 0.093 3.907 24 C -0.131 4.131 25 C -0.103 4.103 26 C -0.149 4.149 27 C -0.062 4.062 28 C -0.086 4.086 29 C 0.055 3.945 30 C 0.067 3.933 31 H 0.262 0.738 32 H 0.027 0.973 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.406 0.594 39 H 0.183 0.817 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.049 0.951 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.979 -17.181 6.753 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.062 3.938 10 N -0.269 5.269 11 C -0.060 4.060 12 C -0.082 4.082 13 N -0.245 5.245 14 C 0.066 3.934 15 H 0.097 0.903 16 C 0.328 3.672 17 O -0.379 6.379 18 O -0.324 6.324 19 C -0.187 4.187 20 C -0.032 4.032 21 N -0.197 5.197 22 H 0.255 0.745 23 C -0.014 4.014 24 C -0.151 4.151 25 C -0.122 4.122 26 C -0.168 4.168 27 C -0.080 4.080 28 C -0.091 4.091 29 C -0.072 4.072 30 C -0.062 4.062 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.264 0.736 39 H 0.200 0.800 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.056 0.944 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.526 -16.734 6.928 25.203 hybrid contribution 0.900 1.493 -0.235 1.759 sum 18.426 -15.242 6.693 24.832 Atomic orbital electron populations 1.69944 1.06017 1.26758 1.50401 1.24962 0.94735 0.99113 0.95002 0.86651 0.79869 0.83663 0.78168 1.20656 1.21255 1.19969 1.21780 0.93466 0.92016 1.51316 0.92261 1.19725 0.90861 0.85534 0.97714 1.62716 1.17038 1.46247 1.00916 1.21875 0.93880 0.96019 0.94264 1.22603 0.95173 0.98383 0.91996 1.61888 1.18260 1.40143 1.04203 1.19134 0.90989 0.95877 0.87399 0.90269 1.23266 0.79617 0.77886 0.86477 1.90684 1.69546 1.36393 1.41234 1.84546 1.43868 1.53377 1.50601 1.19451 1.07992 0.92890 0.98362 1.21903 0.94241 1.00114 0.86966 1.41851 1.45352 1.08388 1.24059 0.74529 1.18256 1.00818 0.84340 0.97990 1.19996 1.01796 0.93870 0.99466 1.20772 0.99998 0.93708 0.97728 1.20610 1.00529 0.99845 0.95823 1.20267 0.97378 0.91674 0.98688 1.18913 1.01150 0.93619 0.95372 1.22462 0.93706 0.99168 0.91898 1.21905 0.94779 0.95400 0.94094 0.92877 0.95517 0.94812 0.93291 0.91363 0.88736 0.95038 0.73622 0.80001 0.86432 0.86014 0.86214 0.86022 0.94404 0.90466 0.93244 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.55 -15.01 7.66 -34.44 -0.26 -15.28 16 8 H 0.06 1.63 5.82 -52.49 -0.31 1.33 16 9 C 0.19 4.83 5.14 -4.97 -0.03 4.80 16 10 N -0.54 -11.73 4.92 -235.90 -1.16 -12.89 16 11 C 0.07 1.38 5.32 -3.77 -0.02 1.36 16 12 C 0.05 0.77 5.21 -3.77 -0.02 0.75 16 13 N -0.52 -8.04 4.00 -229.27 -0.92 -8.95 16 14 C 0.18 2.34 2.50 -70.02 -0.18 2.16 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 16 C 0.49 6.49 7.32 36.01 0.26 6.75 16 17 O -0.49 -8.04 14.59 -18.74 -0.27 -8.31 16 18 O -0.51 -5.18 13.34 -39.25 -0.52 -5.70 16 19 C -0.18 -2.24 4.68 -102.71 -0.48 -2.72 16 20 C 0.10 1.10 9.24 -16.73 -0.15 0.95 16 21 N -0.59 -5.74 6.07 -10.65 -0.06 -5.81 16 22 H 0.42 2.80 8.96 -40.82 -0.37 2.43 16 23 C 0.09 1.01 7.28 -83.99 -0.61 0.39 16 24 C -0.13 -1.20 10.08 -39.43 -0.40 -1.60 16 25 C -0.10 -0.88 10.01 -39.54 -0.40 -1.28 16 26 C -0.15 -1.34 9.97 -39.94 -0.40 -1.74 16 27 C -0.06 -0.65 10.05 -39.64 -0.40 -1.05 16 28 C -0.09 -1.02 6.35 -105.13 -0.67 -1.69 16 29 C 0.05 0.85 4.98 -3.76 -0.02 0.83 16 30 C 0.07 1.29 5.24 -3.77 -0.02 1.27 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 1.11 6.78 -51.93 -0.35 0.75 16 35 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 36 H 0.09 1.61 5.30 -51.93 -0.28 1.34 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.41 2.42 9.10 45.56 0.41 2.83 16 39 H 0.18 2.13 7.34 -52.49 -0.39 1.74 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 1.05 5.09 -51.93 -0.26 0.79 16 46 H 0.05 1.04 6.62 -51.93 -0.34 0.70 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -33.09 376.05 -11.10 -44.18 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.66 Total: 5.20 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.88 Total: -4.37 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -1.40 Total: -53.23 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.80 Total: -14.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.09 -11.10 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020745404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.876 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds