Wall clock time and date at job start Tue Mar 31 2020 07:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48503 * 109.46897 * 269.99999 * 3 2 1 5 5 H 1.48497 * 109.47021 * 30.00135 * 3 2 1 6 6 H 1.48501 * 109.46789 * 150.00236 * 3 2 1 7 7 C 1.37883 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99801 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99884 * 0.02562 * 7 2 1 10 10 N 1.46909 * 109.46773 * 185.01026 * 9 7 2 11 11 C 1.46957 * 110.99674 * 295.18076 * 10 9 7 12 12 C 1.53048 * 109.36157 * 183.19167 * 11 10 9 13 13 N 1.46953 * 109.36526 * 301.59420 * 12 11 10 14 14 C 1.46893 * 111.00572 * 183.19126 * 13 12 11 15 15 H 1.09000 * 109.47139 * 299.99889 * 14 13 12 16 16 C 1.50708 * 109.47227 * 59.99798 * 14 13 12 17 17 O 1.20819 * 119.99732 * 0.02562 * 16 14 13 18 18 O 1.34226 * 119.99996 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47573 * 180.02562 * 14 13 12 20 20 C 1.34242 * 126.50209 * 340.02142 * 19 14 13 21 21 N 1.36825 * 109.93113 * 180.02562 * 20 19 14 22 22 H 0.96995 * 125.05906 * 180.02562 * 21 20 19 23 23 C 1.37684 * 109.87643 * 0.02562 * 21 20 19 24 24 C 1.39119 * 133.50796 * 180.02562 * 23 21 20 25 25 C 1.37748 * 119.78271 * 179.97438 * 24 23 21 26 26 C 1.38835 * 120.66136 * 359.97438 * 25 24 23 27 27 C 1.36625 * 120.53249 * 0.02562 * 26 25 24 28 28 C 1.39632 * 119.76223 * 359.68883 * 27 26 25 29 29 C 1.46962 * 110.87996 * 59.32033 * 13 12 11 30 30 C 1.46952 * 110.99722 * 58.97583 * 10 9 7 31 31 H 0.96996 * 120.00352 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47424 * 65.01062 * 9 7 2 33 33 H 1.09000 * 109.47033 * 305.00622 * 9 7 2 34 34 H 1.08998 * 109.49455 * 63.21987 * 11 10 9 35 35 H 1.09006 * 109.48720 * 303.15606 * 11 10 9 36 36 H 1.08999 * 109.49079 * 181.63032 * 12 11 10 37 37 H 1.09004 * 109.51018 * 61.57683 * 12 11 10 38 38 H 0.96696 * 116.99990 * 179.97438 * 18 16 14 39 39 H 1.08001 * 125.03078 * 0.02562 * 20 19 14 40 40 H 1.08000 * 120.10940 * 359.96025 * 24 23 21 41 41 H 1.07996 * 119.67026 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.73431 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.11710 * 180.02562 * 27 26 25 44 44 H 1.08999 * 109.48416 * 60.65043 * 29 13 12 45 45 H 1.08998 * 109.49139 * 180.71487 * 29 13 12 46 46 H 1.09002 * 109.49247 * 296.77873 * 30 10 9 47 47 H 1.08998 * 109.49215 * 56.84770 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2009 -3.6131 0.1221 11 6 3.0789 -3.6872 -1.0540 12 6 3.9975 -4.9046 -0.9257 13 7 4.7853 -4.7925 0.3097 14 6 5.7353 -5.9063 0.4313 15 1 5.1891 -6.8494 0.4496 16 6 6.6771 -5.8940 -0.7452 17 8 6.5683 -5.0443 -1.5972 18 8 7.6367 -6.8271 -0.8465 19 6 6.5229 -5.7578 1.7075 20 6 6.6864 -4.6309 2.4185 21 7 7.4641 -4.8807 3.5162 22 1 7.7197 -4.2210 4.1797 23 6 7.8298 -6.2079 3.5386 24 6 8.5968 -6.9754 4.4092 25 6 8.7858 -8.3159 4.1543 26 6 8.2177 -8.9109 3.0360 27 6 7.4608 -8.1760 2.1678 28 6 7.2514 -6.8169 2.4101 29 6 3.9074 -4.7183 1.4859 30 6 2.9887 -3.5008 1.3575 31 1 -0.4850 0.8400 0.0004 32 1 0.6936 -2.5970 -0.9311 33 1 0.5584 -2.5188 0.8420 34 1 3.6820 -2.7814 -1.1153 35 1 2.4726 -3.7824 -1.9549 36 1 4.6694 -4.9452 -1.7830 37 1 3.3956 -5.8128 -0.8921 38 1 8.2164 -6.7786 -1.6189 39 1 6.2662 -3.6697 2.1620 40 1 9.0428 -6.5218 5.2820 41 1 9.3819 -8.9099 4.8312 42 1 8.3759 -9.9630 2.8504 43 1 7.0217 -8.6458 1.3002 44 1 3.3043 -5.6242 1.5472 45 1 4.5136 -4.6230 2.3868 46 1 3.5909 -2.5929 1.3237 47 1 2.3169 -3.4603 2.2149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020745404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:48 Heat of formation + Delta-G solvation = -23.875698 kcal Electronic energy + Delta-G solvation = -30603.824294 eV Core-core repulsion = 26558.565143 eV Total energy + Delta-G solvation = -4045.259151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.45763 -41.29136 -39.90377 -37.83378 -37.23053 -36.61547 -34.63167 -33.16904 -31.82131 -31.07219 -30.15661 -29.18407 -28.02327 -26.10039 -24.46780 -23.66184 -23.49429 -22.69582 -22.56743 -20.81906 -20.38618 -18.96717 -18.77238 -18.43952 -17.61931 -17.49708 -16.98330 -16.66970 -16.29562 -16.16207 -15.82741 -15.59991 -15.38506 -15.28873 -14.91775 -14.86198 -14.73615 -14.52496 -13.90911 -13.77945 -13.58330 -13.45699 -13.20865 -12.92257 -12.75403 -12.52734 -12.49479 -12.47181 -12.40490 -12.24213 -12.11785 -11.90738 -11.79908 -11.74616 -11.42922 -11.10102 -10.60619 -10.45115 -9.42624 -9.08907 -9.01213 -8.58149 -8.14956 -6.34003 0.25176 0.76159 1.17490 1.35976 1.37062 1.47475 1.61936 2.03294 2.24387 2.37461 2.88342 3.08730 3.09697 3.39328 3.76856 3.86994 3.98147 4.02014 4.19407 4.24333 4.30867 4.37113 4.46630 4.49397 4.50723 4.57492 4.62593 4.72293 4.76411 4.88547 4.92334 5.02220 5.06476 5.13417 5.22033 5.25501 5.27168 5.34407 5.59870 5.66904 5.73347 5.76122 5.77724 5.83004 5.96802 5.98822 6.06564 6.27188 6.29910 6.52539 6.68145 6.86782 7.07629 7.37146 8.87511 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015729 B = 0.002966 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.750987 B = 9439.178831 C =10116.462294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.201 3.799 10 N -0.543 5.543 11 C 0.072 3.928 12 C 0.060 3.940 13 N -0.528 5.528 14 C 0.179 3.821 15 H 0.091 0.909 16 C 0.494 3.506 17 O -0.529 6.529 18 O -0.501 6.501 19 C -0.193 4.193 20 C 0.089 3.911 21 N -0.584 5.584 22 H 0.430 0.570 23 C 0.079 3.921 24 C -0.136 4.136 25 C -0.103 4.103 26 C -0.149 4.149 27 C -0.077 4.077 28 C -0.106 4.106 29 C 0.071 3.929 30 C 0.069 3.931 31 H 0.265 0.735 32 H 0.001 0.999 33 H 0.010 0.990 34 H 0.021 0.979 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.425 0.575 39 H 0.178 0.822 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.126 0.874 44 H 0.042 0.958 45 H 0.099 0.901 46 H 0.028 0.972 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.505 -18.579 8.110 28.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.267 5.267 11 C -0.056 4.056 12 C -0.068 4.068 13 N -0.254 5.254 14 C 0.070 3.930 15 H 0.108 0.892 16 C 0.336 3.664 17 O -0.418 6.418 18 O -0.314 6.314 19 C -0.201 4.201 20 C -0.040 4.040 21 N -0.187 5.187 22 H 0.270 0.730 23 C -0.028 4.028 24 C -0.156 4.156 25 C -0.122 4.122 26 C -0.168 4.168 27 C -0.096 4.096 28 C -0.111 4.111 29 C -0.056 4.056 30 C -0.060 4.060 31 H 0.074 0.926 32 H 0.019 0.981 33 H 0.028 0.972 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.287 0.713 39 H 0.195 0.805 40 H 0.157 0.843 41 H 0.167 0.833 42 H 0.159 0.841 43 H 0.144 0.856 44 H 0.061 0.939 45 H 0.117 0.883 46 H 0.046 0.954 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.099 -18.164 8.304 28.334 hybrid contribution 0.199 1.802 -0.625 1.918 sum 20.297 -16.362 7.679 27.178 Atomic orbital electron populations 1.70059 1.07512 1.27827 1.51247 1.25790 0.95579 1.02730 0.94585 0.85588 0.78733 0.79265 0.78295 1.20241 1.20472 1.19218 1.21964 0.93328 0.92915 1.50981 0.92655 1.19385 0.91210 0.86732 0.95254 1.62656 1.17496 1.44000 1.02502 1.21839 0.93663 0.96609 0.93520 1.22380 0.94678 0.96713 0.93023 1.61763 1.18249 1.41991 1.03414 1.19097 0.90641 0.95134 0.88172 0.89195 1.23233 0.79760 0.77577 0.85783 1.90677 1.70718 1.37941 1.42466 1.84495 1.43328 1.51904 1.51656 1.19416 1.08793 0.93699 0.98222 1.21842 0.94736 0.99716 0.87669 1.41792 1.44617 1.08568 1.23737 0.73033 1.18537 1.01333 0.84646 0.98301 1.20337 1.01300 0.94181 0.99812 1.21172 0.99504 0.93736 0.97790 1.20945 0.99512 1.00895 0.95439 1.20440 0.98215 0.91439 0.99500 1.19073 1.01853 0.94190 0.95936 1.22283 0.93324 0.97140 0.92867 1.21924 0.94757 0.96553 0.92725 0.92619 0.98064 0.97200 0.96079 0.91904 0.88563 0.94009 0.71348 0.80529 0.84308 0.83305 0.84052 0.85640 0.93929 0.88254 0.95378 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.71 5.46 84.66 0.46 1.17 16 3 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.55 -31.28 7.66 25.60 0.20 -31.08 16 8 H 0.06 3.13 5.82 -2.91 -0.02 3.12 16 9 C 0.20 10.83 5.14 85.55 0.44 11.27 16 10 N -0.54 -24.09 4.92 -900.26 -4.43 -28.52 16 11 C 0.07 3.01 5.32 86.31 0.46 3.47 16 12 C 0.06 2.00 5.21 86.31 0.45 2.45 16 13 N -0.53 -16.10 4.00 -879.29 -3.51 -19.62 16 14 C 0.18 4.54 2.50 43.43 0.11 4.65 16 15 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 16 C 0.49 12.61 7.32 71.24 0.52 13.13 16 17 O -0.53 -17.02 14.59 21.98 0.32 -16.70 16 18 O -0.50 -9.18 13.34 -51.38 -0.69 -9.86 16 19 C -0.19 -4.57 4.68 -18.63 -0.09 -4.65 16 20 C 0.09 1.96 9.24 83.00 0.77 2.73 16 21 N -0.58 -10.33 6.07 -187.61 -1.14 -11.46 16 22 H 0.43 5.02 8.96 -92.71 -0.83 4.19 16 23 C 0.08 1.54 7.28 39.03 0.28 1.83 16 24 C -0.14 -2.10 10.08 22.37 0.23 -1.87 16 25 C -0.10 -1.41 10.01 22.30 0.22 -1.19 16 26 C -0.15 -2.25 9.97 22.04 0.22 -2.03 16 27 C -0.08 -1.46 10.05 22.23 0.22 -1.24 16 28 C -0.11 -2.32 6.35 -20.20 -0.13 -2.45 16 29 C 0.07 2.15 4.98 86.31 0.43 2.58 16 30 C 0.07 2.70 5.24 86.31 0.45 3.15 16 31 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.00 0.07 8.12 -2.39 -0.02 0.05 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.02 0.99 6.78 -2.39 -0.02 0.97 16 35 H 0.06 2.62 8.12 -2.38 -0.02 2.60 16 36 H 0.10 3.28 5.30 -2.39 -0.01 3.27 16 37 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.43 4.19 9.10 -74.06 -0.67 3.52 16 39 H 0.18 4.04 7.34 -2.91 -0.02 4.02 16 40 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.10 2.60 5.09 -2.39 -0.01 2.59 16 46 H 0.03 1.22 6.62 -2.39 -0.02 1.20 16 47 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -72.35 376.05 -2.37 -74.72 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.48 Total: 18.28 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 5.25 Total: 1.91 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -8.80 Total: -115.14 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.36 Total: -26.56 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -72.35 -2.37 -74.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020745404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.846 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds