Wall clock time and date at job start Tue Mar 31 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30836 * 125.90218 * 2 1 4 4 N 1.40086 * 108.20289 * 180.25795 * 3 2 1 5 5 C 1.46502 * 126.04045 * 179.74059 * 4 3 2 6 6 C 1.50697 * 109.46997 * 269.97635 * 5 4 3 7 7 H 1.08008 * 120.00215 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00017 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00035 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00150 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47438 * 89.99554 * 10 8 6 12 12 H 1.48501 * 109.47330 * 209.99923 * 10 8 6 13 13 H 1.48508 * 109.46788 * 329.99810 * 10 8 6 14 14 C 1.34950 * 107.92863 * 359.71666 * 4 3 2 15 15 C 1.50700 * 126.13135 * 179.97438 * 14 4 3 16 16 C 1.35318 * 107.74148 * 0.02562 * 14 4 3 17 17 C 1.50706 * 126.03688 * 180.02562 * 16 14 4 18 18 C 1.52997 * 109.47243 * 90.00068 * 17 16 14 19 19 C 1.50697 * 109.47368 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00107 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00102 * 180.02562 * 19 18 17 22 22 C 1.46504 * 119.99987 * 180.02562 * 21 19 18 23 23 C 1.50707 * 109.46935 * 179.97438 * 22 21 19 24 24 C 1.38227 * 119.62059 * 95.01845 * 23 22 21 25 25 C 1.38627 * 119.15702 * 179.74122 * 24 23 22 26 26 C 1.38669 * 118.42389 * 0.47826 * 25 24 23 27 27 C 1.38186 * 119.16143 * 359.49762 * 26 25 24 28 28 N 1.31856 * 119.61137 * 274.99275 * 23 22 21 29 29 H 1.08999 * 109.47320 * 270.22089 * 1 2 3 30 30 H 1.09002 * 109.46439 * 30.21344 * 1 2 3 31 31 H 1.08993 * 109.47238 * 150.21258 * 1 2 3 32 32 H 1.09007 * 109.46855 * 29.96687 * 5 4 3 33 33 H 1.08996 * 109.47580 * 149.96955 * 5 4 3 34 34 H 0.96994 * 119.99651 * 180.02562 * 9 8 6 35 35 H 1.08990 * 109.46983 * 270.02605 * 15 14 4 36 36 H 1.09004 * 109.46830 * 30.02741 * 15 14 4 37 37 H 1.09004 * 109.47281 * 150.01964 * 15 14 4 38 38 H 1.08997 * 109.47447 * 330.00002 * 17 16 14 39 39 H 1.09003 * 109.46893 * 209.99957 * 17 16 14 40 40 H 1.09000 * 109.47452 * 59.99619 * 18 17 16 41 41 H 1.09007 * 109.47010 * 300.00278 * 18 17 16 42 42 H 0.97003 * 120.00414 * 359.97438 * 21 19 18 43 43 H 1.08997 * 109.47679 * 59.99430 * 22 21 19 44 44 H 1.09003 * 109.46652 * 299.99390 * 22 21 19 45 45 H 1.07998 * 120.41916 * 359.95342 * 24 23 22 46 46 H 1.08008 * 120.78688 * 180.22921 * 25 24 23 47 47 H 1.08002 * 120.42244 * 179.78279 * 26 25 24 48 48 H 1.07996 * 119.61757 * 180.25243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6339 -0.0060 5 6 4.7901 1.5004 -0.0134 6 6 5.1883 1.7946 -1.4367 7 1 4.6187 1.3775 -2.2541 8 6 6.2798 2.5963 -1.6955 9 7 6.6276 2.8527 -2.9377 10 14 7.2654 3.3171 -0.2819 11 1 8.3549 2.3795 0.0907 12 1 7.8513 4.6164 -0.6988 13 1 6.3732 3.5286 0.8863 14 6 3.6142 -0.7156 -0.0032 15 6 4.8349 -1.5993 -0.0082 16 6 2.3271 -1.1331 0.0037 17 6 1.8597 -2.5658 0.0094 18 6 1.7081 -3.0471 1.4538 19 6 1.2402 -4.4796 1.4595 20 8 1.0475 -5.0588 0.4115 21 7 1.0360 -5.1171 2.6292 22 6 0.5817 -6.5099 2.6348 23 6 0.4322 -6.9839 4.0576 24 6 -0.8044 -6.9218 4.6720 25 6 -0.9320 -7.3653 5.9792 26 6 0.1960 -7.8476 6.6257 27 6 1.3991 -7.8796 5.9469 28 7 1.4827 -7.4534 4.7016 29 1 -0.3634 0.0040 1.0276 30 1 -0.3632 0.8881 -0.5172 31 1 -0.3633 -0.8918 -0.5105 32 1 4.5590 2.4341 0.4996 33 1 5.6119 0.9989 0.4976 34 1 7.3957 3.4164 -3.1197 35 1 5.1237 -1.8140 -1.0370 36 1 5.6538 -1.0905 0.5004 37 1 4.6101 -2.5324 0.5085 38 1 2.5908 -3.1886 -0.5062 39 1 0.8986 -2.6365 -0.4999 40 1 0.9771 -2.4244 1.9695 41 1 2.6693 -2.9763 1.9631 42 1 1.1905 -4.6541 3.4675 43 1 1.3129 -7.1328 2.1196 44 1 -0.3793 -6.5806 2.1251 45 1 -1.6609 -6.5358 4.1394 46 1 -1.8866 -7.3323 6.4835 47 1 0.1340 -8.1981 7.6454 48 1 2.2814 -8.2576 6.4419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024049995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:07 Heat of formation + Delta-G solvation = 56.442862 kcal Electronic energy + Delta-G solvation = -28168.011383 eV Core-core repulsion = 24223.953768 eV Total energy + Delta-G solvation = -3944.057615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.83172 -40.65872 -39.55142 -35.35356 -34.42553 -33.37619 -32.97754 -32.48242 -32.01018 -30.44839 -29.28129 -27.70109 -26.30122 -26.08387 -24.04606 -23.70643 -22.39435 -21.83475 -20.48582 -18.85996 -18.66523 -17.72996 -17.12038 -17.01831 -16.79503 -16.27609 -15.74076 -15.65118 -15.38195 -14.69989 -14.30269 -14.12382 -14.07086 -13.87316 -13.63362 -13.31646 -13.21322 -13.02710 -12.85634 -12.69571 -12.41232 -12.32230 -12.20832 -12.06874 -11.95937 -11.87113 -11.50191 -11.31661 -10.99554 -10.76817 -10.68018 -10.44436 -10.20738 -10.09253 -9.94218 -9.69441 -9.65781 -9.51380 -9.30592 -8.78415 -8.22674 -7.50364 -6.26159 -4.29206 0.47873 0.73718 2.60166 2.68494 2.89680 3.13439 3.21429 3.22448 3.31577 3.46605 3.51931 3.71863 4.15886 4.21259 4.33707 4.52972 4.57652 4.73029 4.97108 5.01021 5.09002 5.17808 5.20071 5.25160 5.31044 5.35238 5.42934 5.59834 5.61253 5.63464 5.74943 5.80284 5.91802 5.95861 5.96732 6.02879 6.11384 6.15042 6.22539 6.30590 6.37669 6.47467 6.51900 6.81641 6.94681 7.28919 7.29216 7.43781 7.45684 7.86594 8.12063 8.31633 8.60422 8.79388 9.28992 10.86393 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.001902 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.211312 B =14719.527964 C =15343.716289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.054 3.946 3 N -0.294 5.294 4 N -0.325 5.325 5 C 0.230 3.770 6 C -0.540 4.540 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.886 5.886 10 Si 0.873 3.127 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.097 3.903 15 C -0.087 4.087 16 C -0.265 4.265 17 C -0.011 4.011 18 C -0.132 4.132 19 C 0.516 3.484 20 O -0.537 6.537 21 N -0.730 5.730 22 C 0.172 3.828 23 C 0.108 3.892 24 C -0.154 4.154 25 C -0.076 4.076 26 C -0.168 4.168 27 C 0.100 3.900 28 N -0.470 5.470 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.269 0.731 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.401 0.599 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.100 -21.168 20.296 32.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 N -0.118 5.118 4 N -0.104 5.104 5 C 0.111 3.889 6 C -0.578 4.578 7 H 0.098 0.902 8 C -0.126 4.126 9 N -0.523 5.523 10 Si 0.699 3.301 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.188 1.188 14 C -0.034 4.034 15 C -0.146 4.146 16 C -0.277 4.277 17 C -0.050 4.050 18 C -0.172 4.172 19 C 0.303 3.697 20 O -0.413 6.413 21 N -0.384 5.384 22 C 0.047 3.953 23 C -0.030 4.030 24 C -0.174 4.174 25 C -0.102 4.102 26 C -0.188 4.188 27 C -0.058 4.058 28 N -0.179 5.179 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.235 0.765 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.155 0.845 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.116 -20.107 18.953 30.586 hybrid contribution -0.035 -0.108 1.579 1.584 sum -13.151 -20.215 20.532 31.673 Atomic orbital electron populations 1.20039 0.87881 1.02610 1.01828 1.21970 0.96190 0.90705 1.02182 1.77276 0.87141 1.22628 1.24735 1.48776 1.05450 1.04013 1.52163 1.19961 0.79460 0.89795 0.99694 1.21163 1.13962 1.32378 0.90313 0.90151 1.24815 0.96641 0.95336 0.95770 1.69876 1.26905 1.37069 1.18435 0.86903 0.80871 0.79549 0.82815 1.19649 1.20471 1.18849 1.20782 0.96288 0.85386 1.00978 1.20376 0.93507 0.97182 1.03507 1.19358 0.91260 0.95198 1.21907 1.19409 1.01797 0.90747 0.93094 1.21744 1.03051 0.91062 1.01382 1.21052 0.76435 0.89269 0.82916 1.90709 1.50842 1.68355 1.31402 1.46015 1.70264 1.12797 1.09302 1.20064 1.01582 0.83273 0.90333 1.21254 0.89306 0.96214 0.96198 1.22066 0.98798 1.00653 0.95897 1.21652 0.99213 0.95001 0.94350 1.22244 0.94014 1.00923 1.01665 1.22834 0.97579 0.95243 0.90096 1.67535 1.32059 1.08986 1.09316 0.91572 0.91474 0.91082 0.93309 0.93971 0.92126 0.90070 0.91212 0.90866 0.91218 0.91097 0.88963 0.89018 0.76523 0.89657 0.89817 0.84385 0.84522 0.84548 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.26 36.01 0.37 -0.54 16 2 C 0.05 1.02 7.22 -82.40 -0.59 0.42 16 3 N -0.29 -6.67 12.58 33.67 0.42 -6.24 16 4 N -0.32 -7.43 3.60 -58.31 -0.21 -7.64 16 5 C 0.23 5.56 5.07 -5.19 -0.03 5.54 16 6 C -0.54 -15.26 9.94 -34.44 -0.34 -15.61 16 7 H 0.08 2.58 8.06 -52.48 -0.42 2.15 16 8 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 9 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 10 Si 0.87 20.28 27.47 -169.99 -4.67 15.61 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 14 C 0.10 1.89 6.93 -82.26 -0.57 1.32 16 15 C -0.09 -1.41 9.72 36.01 0.35 -1.06 16 16 C -0.27 -4.67 5.35 -105.05 -0.56 -5.23 16 17 C -0.01 -0.16 4.41 -27.88 -0.12 -0.29 16 18 C -0.13 -1.46 5.68 -27.89 -0.16 -1.62 16 19 C 0.52 5.97 7.83 -10.99 -0.09 5.88 16 20 O -0.54 -8.20 15.98 5.56 0.09 -8.11 16 21 N -0.73 -6.48 5.55 -61.47 -0.34 -6.82 16 22 C 0.17 1.47 5.98 -5.19 -0.03 1.44 16 23 C 0.11 0.84 6.15 -82.58 -0.51 0.33 16 24 C -0.15 -0.89 9.72 -39.44 -0.38 -1.28 16 25 C -0.08 -0.36 10.18 -39.28 -0.40 -0.76 16 26 C -0.17 -0.79 10.11 -39.44 -0.40 -1.19 16 27 C 0.10 0.63 11.18 -17.55 -0.20 0.43 16 28 N -0.47 -4.11 10.27 -9.47 -0.10 -4.20 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.87 7.25 -51.93 -0.38 0.49 16 32 H 0.05 1.20 7.20 -51.93 -0.37 0.82 16 33 H 0.04 0.94 6.48 -51.93 -0.34 0.60 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.11 7.08 -51.93 -0.37 0.74 16 37 H 0.07 0.95 7.77 -51.93 -0.40 0.55 16 38 H 0.07 1.04 7.73 -51.93 -0.40 0.63 16 39 H 0.07 1.01 7.21 -51.93 -0.37 0.64 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.40 2.86 8.46 -40.82 -0.35 2.52 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 45 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 47 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 48 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 406.03 15.07 6.12 6.12 Total: -1.00 -35.64 406.03 -8.89 -44.52 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.21 Total: 2.61 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.76 Total: -10.09 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.55 Total: -50.66 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.64 -8.89 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.967 kcal (2) G-P(sol) polarization free energy of solvation -35.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds