Wall clock time and date at job start Tue Mar 31 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38035 * 120.05993 * 2 1 4 4 C 1.38307 * 120.12062 * 180.02562 * 3 2 1 5 5 C 1.38339 * 120.23727 * 359.97438 * 4 3 2 6 6 C 1.37999 * 120.12438 * 359.74180 * 5 4 3 7 7 C 1.39307 * 120.05946 * 180.02562 * 2 1 3 8 8 C 1.48416 * 120.12126 * 359.96122 * 7 2 1 9 9 N 1.30759 * 126.41424 * 359.67756 * 8 7 2 10 10 O 1.21290 * 110.09978 * 180.26482 * 9 8 7 11 11 C 1.33666 * 110.02735 * 0.02562 * 10 9 8 12 12 C 1.50701 * 126.44047 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46594 * 269.95399 * 12 11 10 14 14 C 1.46953 * 111.00019 * 293.79397 * 13 12 11 15 15 C 1.53056 * 109.36340 * 176.81143 * 14 13 12 16 16 N 1.46961 * 109.36262 * 58.40609 * 15 14 13 17 17 C 1.46896 * 110.99910 * 176.81029 * 16 15 14 18 18 C 1.50702 * 109.47105 * 293.79690 * 17 16 15 19 19 H 1.07997 * 120.00054 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99983 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99608 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00022 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47082 * 90.00206 * 22 20 18 24 24 H 1.48502 * 109.47351 * 210.00168 * 22 20 18 25 25 H 1.48499 * 109.47036 * 330.00269 * 22 20 18 26 26 C 1.46957 * 110.88082 * 300.68013 * 16 15 14 27 27 C 1.46961 * 110.99786 * 169.99901 * 13 12 11 28 28 N 1.30971 * 107.12431 * 359.97438 * 11 10 9 29 29 H 1.09001 * 109.47586 * 269.97676 * 1 2 3 30 30 H 1.09001 * 109.47174 * 29.98542 * 1 2 3 31 31 H 1.09008 * 109.47204 * 149.98018 * 1 2 3 32 32 H 1.08000 * 119.94490 * 0.03903 * 3 2 1 33 33 H 1.07996 * 119.88018 * 179.97438 * 4 3 2 34 34 H 1.08006 * 119.93342 * 180.02562 * 5 4 3 35 35 H 1.08000 * 120.06659 * 180.27597 * 6 5 4 36 36 H 1.09000 * 109.47232 * 29.95002 * 12 11 10 37 37 H 1.08994 * 109.47880 * 149.95396 * 12 11 10 38 38 H 1.08997 * 109.49166 * 296.78033 * 14 13 12 39 39 H 1.09001 * 109.48480 * 56.84846 * 14 13 12 40 40 H 1.08991 * 109.48954 * 298.43650 * 15 14 13 41 41 H 1.08995 * 109.50374 * 178.37678 * 15 14 13 42 42 H 1.08996 * 109.47424 * 53.79831 * 17 16 15 43 43 H 1.09003 * 109.47032 * 173.80511 * 17 16 15 44 44 H 0.97007 * 119.99351 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.48295 * 299.35122 * 26 16 15 46 46 H 1.08992 * 109.48987 * 179.28952 * 26 16 15 47 47 H 1.09004 * 109.48990 * 303.15723 * 27 13 12 48 48 H 1.08996 * 109.49042 * 63.21625 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1947 0.0000 4 6 3.5815 1.1962 -0.0005 5 6 4.2794 0.0017 -0.0005 6 6 3.5982 -1.1984 0.0054 7 6 2.2048 -1.2057 -0.0005 8 6 1.4667 -2.4934 -0.0002 9 7 0.1678 -2.6435 0.0064 10 8 -0.1154 -3.8229 0.0098 11 6 0.9988 -4.5613 0.0061 12 6 1.0753 -6.0663 0.0079 13 7 1.1071 -6.5533 1.3936 14 6 2.3467 -6.1426 2.0677 15 6 2.3056 -6.5997 3.5278 16 7 2.1415 -8.0593 3.5770 17 6 2.1733 -8.5462 4.9626 18 6 3.5466 -8.3235 5.5418 19 1 4.3184 -7.8657 4.9410 20 6 3.8178 -8.7043 6.8390 21 7 5.0161 -8.5095 7.3446 22 14 2.4831 -9.4969 7.8781 23 1 2.5264 -10.9705 7.6995 24 1 2.7063 -9.1648 9.3081 25 1 1.1554 -8.9856 7.4526 26 6 0.9020 -8.4700 2.9028 27 6 0.9430 -8.0128 1.4428 28 7 2.0117 -3.7310 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8899 -0.5142 32 1 1.6585 2.1300 0.0006 33 1 4.1185 2.1331 -0.0010 34 1 5.3594 0.0086 -0.0005 35 1 4.1440 -2.1303 0.0099 36 1 0.2023 -6.4751 -0.5008 37 1 1.9799 -6.3849 -0.5100 38 1 3.2010 -6.5990 1.5677 39 1 2.4393 -5.0573 2.0289 40 1 1.4674 -6.1222 4.0349 41 1 3.2362 -6.3217 4.0225 42 1 1.4367 -8.0040 5.5553 43 1 1.9405 -9.6110 4.9789 44 1 5.2069 -8.7777 8.2571 45 1 0.0477 -8.0137 3.4029 46 1 0.8093 -9.5553 2.9416 47 1 0.0122 -8.2910 0.9483 48 1 1.7812 -8.4904 0.9356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027208727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:59 Heat of formation + Delta-G solvation = 120.863655 kcal Electronic energy + Delta-G solvation = -29234.039140 eV Core-core repulsion = 25292.775020 eV Total energy + Delta-G solvation = -3941.264120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.64626 -39.68388 -39.02917 -36.14606 -35.49650 -33.71482 -32.69131 -32.17001 -30.97655 -30.57770 -29.25252 -27.40767 -26.91674 -24.91211 -24.24633 -23.32776 -22.67532 -22.20031 -21.14250 -20.68393 -19.35296 -18.25859 -17.87715 -16.81910 -16.79087 -16.02053 -15.76512 -15.43278 -15.03308 -14.95281 -14.47963 -14.43509 -14.16651 -14.01370 -13.76007 -13.67025 -13.52033 -13.16251 -12.95850 -12.56560 -12.48993 -12.30032 -12.07228 -11.92487 -11.82633 -11.62223 -11.50872 -11.42723 -11.02939 -10.96037 -10.87627 -10.67535 -10.50904 -10.42142 -10.11984 -9.85711 -9.28695 -9.08552 -8.85864 -8.58217 -8.47573 -7.41651 -6.06355 -4.03926 0.46681 1.06229 1.15432 2.26897 2.62600 3.27674 3.27937 3.35414 3.37464 3.51180 3.73361 3.95227 4.41069 4.50782 4.57562 4.64995 4.71210 4.76546 4.92048 4.98328 5.05757 5.14217 5.21623 5.25499 5.37733 5.40234 5.41500 5.47739 5.55348 5.57149 5.65223 5.66406 5.76250 5.79519 5.93659 6.00004 6.02343 6.14766 6.20255 6.23177 6.25659 6.41878 6.59709 6.61357 6.77989 6.85974 6.91872 7.05743 7.57014 7.86513 8.00522 8.01155 8.63750 9.01582 9.55259 11.06690 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.002448 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.254567 B =11436.738651 C =12708.047509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.049 4.049 3 C -0.127 4.127 4 C -0.097 4.097 5 C -0.130 4.130 6 C -0.069 4.069 7 C -0.027 4.027 8 C 0.215 3.785 9 N -0.374 5.374 10 O 0.081 5.919 11 C 0.206 3.794 12 C 0.142 3.858 13 N -0.538 5.538 14 C 0.055 3.945 15 C 0.068 3.932 16 N -0.529 5.529 17 C 0.163 3.837 18 C -0.510 4.510 19 H 0.080 0.920 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.268 1.268 26 C 0.053 3.947 27 C 0.064 3.936 28 N -0.471 5.471 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.094 0.906 42 H -0.011 1.011 43 H 0.025 0.975 44 H 0.264 0.736 45 H 0.033 0.967 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 14.672 -19.584 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.116 4.116 5 C -0.148 4.148 6 C -0.089 4.089 7 C -0.029 4.029 8 C -0.054 4.054 9 N -0.083 5.083 10 O 0.024 5.976 11 C -0.015 4.015 12 C 0.013 3.987 13 N -0.264 5.264 14 C -0.073 4.073 15 C -0.060 4.060 16 N -0.254 5.254 17 C 0.037 3.963 18 C -0.548 4.548 19 H 0.098 0.902 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.702 3.298 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.193 1.193 26 C -0.076 4.076 27 C -0.063 4.063 28 N -0.205 5.205 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.112 0.888 42 H 0.007 0.993 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.728 15.372 -19.410 26.253 hybrid contribution -0.602 -0.550 0.822 1.158 sum -9.330 14.823 -18.588 25.540 Atomic orbital electron populations 1.21166 0.90359 1.03922 1.03204 1.19984 0.96657 0.91744 0.96711 1.20967 0.94295 0.97170 1.02101 1.21327 0.94213 0.98397 0.97678 1.21125 1.00390 0.91917 1.01372 1.21252 0.92345 0.99281 0.96017 1.17286 0.92471 0.86787 1.06328 1.23849 0.86943 0.93469 1.01149 1.74947 1.16217 0.95578 1.21522 1.85299 1.35374 1.11924 1.65037 1.28562 0.79937 0.98518 0.94513 1.20522 1.04552 0.80792 0.92873 1.62170 1.38551 1.13714 1.12012 1.22369 0.89186 1.00057 0.95654 1.22017 1.02146 0.88410 0.93457 1.62133 1.32828 1.11075 1.19350 1.20154 0.97802 0.94827 0.83560 1.21022 0.95665 1.40500 0.97645 0.90171 1.24903 0.95274 0.95551 0.97610 1.69898 1.20330 1.48009 1.15653 0.86863 0.82901 0.80147 0.79859 1.20133 1.21217 1.19260 1.22125 0.92540 1.00024 0.92932 1.22186 1.00945 0.85037 0.98134 1.72020 1.29510 0.98769 1.20215 0.90722 0.91503 0.88953 0.85385 0.85519 0.85163 0.84529 0.87015 0.89715 0.93269 0.90781 0.95338 0.88777 0.99296 0.95718 0.92655 0.94887 0.90517 0.90376 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.19 36.00 0.33 -0.94 16 2 C -0.05 -0.53 5.91 -104.30 -0.62 -1.14 16 3 C -0.13 -1.12 9.69 -39.63 -0.38 -1.50 16 4 C -0.10 -0.79 10.04 -39.52 -0.40 -1.18 16 5 C -0.13 -1.16 10.03 -39.63 -0.40 -1.56 16 6 C -0.07 -0.77 9.70 -39.26 -0.38 -1.15 16 7 C -0.03 -0.33 5.88 -104.89 -0.62 -0.95 16 8 C 0.22 2.93 7.67 -156.12 -1.20 1.74 16 9 N -0.37 -5.04 8.73 30.97 0.27 -4.77 16 10 O 0.08 1.04 11.29 18.05 0.20 1.25 16 11 C 0.21 2.51 7.12 -12.99 -0.09 2.42 16 12 C 0.14 1.42 5.59 -4.97 -0.03 1.39 16 13 N -0.54 -7.07 4.70 -235.91 -1.11 -8.18 16 14 C 0.05 0.86 5.44 -3.77 -0.02 0.84 16 15 C 0.07 1.32 5.43 -3.76 -0.02 1.30 16 16 N -0.53 -10.82 4.70 -235.92 -1.11 -11.92 16 17 C 0.16 3.91 3.79 -4.98 -0.02 3.89 16 18 C -0.51 -14.38 9.03 -34.44 -0.31 -14.69 16 19 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 22 Si 0.87 21.43 27.47 -169.99 -4.67 16.77 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 26 C 0.05 0.85 5.61 -3.77 -0.02 0.83 16 27 C 0.06 0.80 5.61 -3.77 -0.02 0.78 16 28 N -0.47 -6.42 10.47 -9.88 -0.10 -6.52 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.09 1.03 5.19 -51.92 -0.27 0.76 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 35 H 0.14 1.50 7.88 -52.49 -0.41 1.09 16 36 H 0.11 0.78 8.03 -51.93 -0.42 0.36 16 37 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.18 6.59 -51.93 -0.34 0.84 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 2.04 6.79 -51.93 -0.35 1.69 16 42 H -0.01 -0.26 7.18 -51.93 -0.37 -0.64 16 43 H 0.02 0.59 7.45 -51.93 -0.39 0.20 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 47 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -32.36 385.28 -11.40 -43.75 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.17 Total: -1.41 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -4.29 Total: -8.05 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -1.28 Total: -58.12 kcal Atomic # 8 Polarization: 1.04 SS G_CDS: 0.20 Total: 1.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.36 -11.40 -43.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027208727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.618 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds