Wall clock time and date at job start Tue Mar 31 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47493 * 2 1 4 4 C 1.50699 * 109.46894 * 240.00234 * 2 1 3 5 5 C 1.38279 * 119.93404 * 285.87492 * 4 2 1 6 6 C 1.38123 * 120.06846 * 179.72715 * 5 4 2 7 7 C 1.38843 * 119.92901 * 0.52386 * 6 5 4 8 8 N 1.40198 * 120.06231 * 179.76628 * 7 6 5 9 9 C 1.34728 * 126.84453 * 359.69915 * 8 7 6 10 10 N 1.30848 * 108.03152 * 179.88704 * 9 8 7 11 11 C 1.33267 * 109.84377 * 0.37921 * 10 9 8 12 12 N 1.30748 * 108.99828 * 359.76111 * 11 10 9 13 13 C 1.38834 * 119.86781 * 359.75170 * 7 6 5 14 14 C 1.38114 * 119.93247 * 359.97438 * 13 7 6 15 15 N 1.46899 * 109.47153 * 120.00532 * 2 1 3 16 16 C 1.46902 * 110.99682 * 302.20901 * 15 2 1 17 17 C 1.46893 * 111.00202 * 178.25934 * 15 2 1 18 18 C 1.50700 * 109.47452 * 190.00029 * 17 15 2 19 19 O 1.21284 * 119.99650 * 359.97438 * 18 17 15 20 20 N 1.34774 * 120.00484 * 179.97438 * 18 17 15 21 21 C 1.46496 * 120.00150 * 179.97438 * 20 18 17 22 22 C 1.50704 * 109.46971 * 179.97438 * 21 20 18 23 23 H 1.07995 * 120.00079 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99680 * 179.97438 * 22 21 20 25 25 N 1.31509 * 120.00218 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99649 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47434 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47131 * 120.00093 * 26 24 22 29 29 H 1.48501 * 109.47114 * 239.99887 * 26 24 22 30 30 H 1.08998 * 109.46882 * 300.00124 * 1 2 3 31 31 H 1.09008 * 109.46944 * 59.99399 * 1 2 3 32 32 H 1.08999 * 109.46972 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.96574 * 0.02562 * 5 4 2 34 34 H 1.07999 * 120.03890 * 180.29289 * 6 5 4 35 35 H 1.07997 * 125.97902 * 0.02562 * 9 8 7 36 36 H 1.07998 * 125.49824 * 179.74585 * 11 10 9 37 37 H 1.07994 * 120.03004 * 180.02562 * 13 7 6 38 38 H 1.08003 * 119.96747 * 180.02562 * 14 13 7 39 39 H 1.09000 * 109.46805 * 66.99399 * 16 15 2 40 40 H 1.08990 * 109.47463 * 306.98894 * 16 15 2 41 41 H 1.09000 * 109.47330 * 186.98600 * 16 15 2 42 42 H 1.09007 * 109.47108 * 309.99875 * 17 15 2 43 43 H 1.09001 * 109.47529 * 69.99464 * 17 15 2 44 44 H 0.97000 * 119.99664 * 359.97438 * 20 18 17 45 45 H 1.09004 * 109.47322 * 299.99531 * 21 20 18 46 46 H 1.08998 * 109.47589 * 59.99864 * 21 20 18 47 47 H 0.97001 * 120.00143 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.9532 -2.0885 -1.3123 6 6 2.4076 -2.7420 -2.4411 7 6 2.9541 -2.0145 -3.4899 8 7 3.4206 -2.6754 -4.6349 9 6 3.4119 -4.0035 -4.8611 10 7 3.9304 -4.2164 -6.0435 11 6 4.2875 -3.0575 -6.5962 12 7 3.9955 -2.0851 -5.7723 13 6 3.0373 -0.6314 -3.4024 14 6 2.5761 0.0168 -2.2734 15 7 2.0197 -0.6926 1.1994 16 6 1.5059 -0.0577 2.4204 17 6 3.4875 -0.7484 1.2127 18 6 3.9453 -1.6685 2.3149 19 8 3.1291 -2.2228 3.0202 20 7 5.2617 -1.8755 2.5169 21 6 5.7066 -2.7695 3.5887 22 6 7.2125 -2.8278 3.6014 23 1 7.7811 -2.2558 2.8833 24 6 7.8642 -3.6107 4.5307 25 7 7.1718 -4.3060 5.4062 26 14 9.7307 -3.6835 4.5460 27 1 10.2689 -2.8169 3.4669 28 1 10.2338 -3.2086 5.8600 29 1 10.1733 -5.0833 4.3231 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.5313 -2.6540 -0.4946 34 1 2.3412 -3.8179 -2.5064 35 1 3.0398 -4.7597 -4.1858 36 1 4.7445 -2.9405 -7.5677 37 1 3.4616 -0.0630 -4.2168 38 1 2.6402 1.0927 -2.2050 39 1 0.4270 -0.2013 2.4782 40 1 1.7299 1.0087 2.3974 41 1 1.9797 -0.5097 3.2919 42 1 3.8456 -1.1237 0.2539 43 1 3.8876 0.2510 1.3840 44 1 5.9144 -1.4324 1.9525 45 1 5.3491 -2.3935 4.5473 46 1 5.3062 -3.7688 3.4181 47 1 7.6302 -4.8571 6.0597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027365213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:35 Heat of formation + Delta-G solvation = 96.649782 kcal Electronic energy + Delta-G solvation = -29111.885464 eV Core-core repulsion = 25104.145442 eV Total energy + Delta-G solvation = -4007.740023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.60915 -40.22285 -38.95279 -37.20520 -34.46645 -34.07280 -32.35592 -31.98883 -31.64229 -31.09453 -29.47580 -28.03518 -26.77400 -25.24742 -24.01987 -23.79858 -22.46275 -21.81736 -21.47056 -20.20169 -19.62538 -18.71274 -17.17704 -16.51901 -16.40986 -16.13330 -15.88911 -15.57499 -15.20913 -15.04543 -14.58602 -14.53857 -14.45709 -14.26260 -13.78567 -13.67942 -13.47795 -13.32534 -13.02876 -12.62194 -12.57272 -12.31973 -12.11521 -11.93814 -11.87188 -11.68097 -11.36011 -11.17277 -11.15745 -10.96508 -10.87419 -10.83138 -10.43412 -10.32861 -10.21198 -9.39648 -9.33746 -9.03874 -8.75242 -8.55844 -8.30629 -7.87511 -6.18698 -4.25443 0.37468 1.02252 1.67666 1.86654 2.57555 3.21955 3.29226 3.32011 3.36363 3.36863 3.62443 3.92275 4.07674 4.20648 4.33487 4.46253 4.48942 4.58798 4.70713 4.97196 4.99057 5.06206 5.17589 5.20173 5.21994 5.29219 5.34756 5.49630 5.57976 5.59307 5.62713 5.66931 5.69205 5.75616 5.90167 5.97433 6.04676 6.11106 6.21895 6.31164 6.35746 6.70471 6.90829 7.04505 7.30264 7.43486 7.50093 7.65630 7.65854 7.95341 8.61940 8.77385 9.10441 9.41545 10.91496 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008155 B = 0.002862 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3432.591338 B = 9779.465442 C =12489.159111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.119 3.881 3 H 0.050 0.950 4 C -0.080 4.080 5 C -0.062 4.062 6 C -0.132 4.132 7 C 0.142 3.858 8 N -0.326 5.326 9 C 0.262 3.738 10 N -0.540 5.540 11 C 0.204 3.796 12 N -0.316 5.316 13 C -0.112 4.112 14 C -0.094 4.094 15 N -0.514 5.514 16 C 0.020 3.980 17 C 0.032 3.968 18 C 0.500 3.500 19 O -0.539 6.539 20 N -0.715 5.715 21 C 0.252 3.748 22 C -0.543 4.543 23 H 0.063 0.937 24 C 0.064 3.936 25 N -0.885 5.885 26 Si 0.902 3.098 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.223 0.777 36 H 0.222 0.778 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.070 0.930 40 H 0.019 0.981 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.389 0.611 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 9.004 -19.144 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 H 0.068 0.932 4 C -0.081 4.081 5 C -0.081 4.081 6 C -0.153 4.153 7 C 0.049 3.951 8 N -0.110 5.110 9 C -0.033 4.033 10 N -0.265 5.265 11 C -0.099 4.099 12 N -0.142 5.142 13 C -0.132 4.132 14 C -0.113 4.113 15 N -0.238 5.238 16 C -0.128 4.128 17 C -0.099 4.099 18 C 0.284 3.716 19 O -0.417 6.417 20 N -0.364 5.364 21 C 0.131 3.869 22 C -0.581 4.581 23 H 0.081 0.919 24 C -0.140 4.140 25 N -0.523 5.523 26 Si 0.730 3.270 27 H -0.196 1.196 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.240 0.760 36 H 0.238 0.762 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.088 0.912 40 H 0.037 0.963 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.221 0.779 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.938 8.414 -18.786 24.313 hybrid contribution 1.746 0.787 -0.073 1.916 sum -11.193 9.201 -18.860 23.783 Atomic orbital electron populations 1.21870 0.92925 1.03197 1.01897 1.20614 0.96083 0.94646 0.87528 0.93184 1.19935 0.98613 0.94124 0.95390 1.20994 0.96749 0.93954 0.96385 1.20885 1.01349 1.00239 0.92833 1.17606 1.00465 0.92353 0.84639 1.47764 1.43982 1.05977 1.13236 1.26244 0.96319 0.85752 0.94956 1.70643 1.19858 1.28466 1.07581 1.26166 0.98133 0.85180 1.00395 1.78112 1.18999 1.22309 0.94797 1.20823 1.01214 0.91818 0.99324 1.20958 0.97667 1.00185 0.92504 1.61698 1.07336 1.53071 1.01718 1.22570 1.01325 0.95614 0.93248 1.22052 0.89007 0.98950 0.99913 1.20248 0.83319 0.82938 0.85119 1.90633 1.52892 1.50055 1.48097 1.46467 1.05624 1.48089 1.36232 1.19077 0.94314 0.88722 0.84763 1.21266 0.90835 1.28853 1.17164 0.91919 1.24947 0.99014 0.95000 0.95036 1.69979 1.35703 1.28372 1.18201 0.86380 0.84636 0.77994 0.78022 1.19648 1.20788 1.20758 0.91806 0.92112 0.91295 0.83542 0.84953 0.76043 0.76167 0.84567 0.85072 0.91169 0.96287 0.89008 0.88453 0.92533 0.77887 0.95636 0.95553 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.82 37.16 0.33 -0.81 16 2 C 0.12 1.13 2.25 -68.87 -0.16 0.97 16 3 H 0.05 0.44 7.94 -51.93 -0.41 0.02 16 4 C -0.08 -0.74 3.44 -104.59 -0.36 -1.10 16 5 C -0.06 -0.61 8.64 -39.61 -0.34 -0.95 16 6 C -0.13 -1.21 9.47 -39.40 -0.37 -1.59 16 7 C 0.14 1.45 6.70 -83.59 -0.56 0.89 16 8 N -0.33 -3.53 3.82 -11.80 -0.05 -3.57 16 9 C 0.26 2.50 11.98 -90.37 -1.08 1.42 16 10 N -0.54 -5.88 11.19 -15.75 -0.18 -6.06 16 11 C 0.20 2.01 13.03 -91.76 -1.20 0.81 16 12 N -0.32 -3.63 12.06 29.30 0.35 -3.27 16 13 C -0.11 -1.08 9.68 -39.41 -0.38 -1.46 16 14 C -0.09 -0.81 9.66 -39.61 -0.38 -1.19 16 15 N -0.51 -6.42 3.86 -237.73 -0.92 -7.34 16 16 C 0.02 0.25 8.61 60.07 0.52 0.77 16 17 C 0.03 0.44 5.18 -4.98 -0.03 0.41 16 18 C 0.50 9.50 7.45 -10.99 -0.08 9.42 16 19 O -0.54 -12.23 14.40 5.55 0.08 -12.15 16 20 N -0.72 -14.68 5.55 -61.47 -0.34 -15.02 16 21 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 22 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 23 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 26 Si 0.90 20.78 29.54 -169.99 -5.02 15.75 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.06 0.49 6.53 -51.93 -0.34 0.15 16 31 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.15 1.55 7.90 -52.49 -0.41 1.14 16 34 H 0.13 0.91 6.81 -52.49 -0.36 0.56 16 35 H 0.22 1.23 7.10 -52.49 -0.37 0.86 16 36 H 0.22 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.14 1.30 7.74 -52.49 -0.41 0.90 16 38 H 0.13 0.87 7.99 -52.48 -0.42 0.45 16 39 H 0.07 0.78 6.67 -51.93 -0.35 0.43 16 40 H 0.02 0.21 8.11 -51.93 -0.42 -0.22 16 41 H 0.09 1.47 5.78 -51.93 -0.30 1.16 16 42 H 0.10 1.25 6.35 -51.92 -0.33 0.92 16 43 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 44 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -34.30 391.93 -10.49 -44.79 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.52 Total: 5.26 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.54 Total: 0.85 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.39 Total: -60.42 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.30 -10.49 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027365213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.439 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds