Wall clock time and date at job start Tue Mar 31 2020 07:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47493 * 2 1 4 4 C 1.50699 * 109.46894 * 240.00234 * 2 1 3 5 5 C 1.38279 * 119.93404 * 285.87492 * 4 2 1 6 6 C 1.38123 * 120.06846 * 179.72715 * 5 4 2 7 7 C 1.38843 * 119.92901 * 0.52386 * 6 5 4 8 8 N 1.40198 * 120.06231 * 179.76628 * 7 6 5 9 9 C 1.34728 * 126.84453 * 359.69915 * 8 7 6 10 10 N 1.30848 * 108.03152 * 179.88704 * 9 8 7 11 11 C 1.33267 * 109.84377 * 0.37921 * 10 9 8 12 12 N 1.30748 * 108.99828 * 359.76111 * 11 10 9 13 13 C 1.38834 * 119.86781 * 359.75170 * 7 6 5 14 14 C 1.38114 * 119.93247 * 359.97438 * 13 7 6 15 15 N 1.46899 * 109.47153 * 120.00532 * 2 1 3 16 16 C 1.46902 * 110.99682 * 302.20901 * 15 2 1 17 17 C 1.46893 * 111.00202 * 178.25934 * 15 2 1 18 18 C 1.50700 * 109.47452 * 190.00029 * 17 15 2 19 19 O 1.21284 * 119.99650 * 359.97438 * 18 17 15 20 20 N 1.34774 * 120.00484 * 179.97438 * 18 17 15 21 21 C 1.46496 * 120.00150 * 179.97438 * 20 18 17 22 22 C 1.50704 * 109.46971 * 179.97438 * 21 20 18 23 23 H 1.07995 * 120.00079 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99680 * 179.97438 * 22 21 20 25 25 N 1.31509 * 120.00218 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99649 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47434 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47131 * 120.00093 * 26 24 22 29 29 H 1.48501 * 109.47114 * 239.99887 * 26 24 22 30 30 H 1.08998 * 109.46882 * 300.00124 * 1 2 3 31 31 H 1.09008 * 109.46944 * 59.99399 * 1 2 3 32 32 H 1.08999 * 109.46972 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.96574 * 0.02562 * 5 4 2 34 34 H 1.07999 * 120.03890 * 180.29289 * 6 5 4 35 35 H 1.07997 * 125.97902 * 0.02562 * 9 8 7 36 36 H 1.07998 * 125.49824 * 179.74585 * 11 10 9 37 37 H 1.07994 * 120.03004 * 180.02562 * 13 7 6 38 38 H 1.08003 * 119.96747 * 180.02562 * 14 13 7 39 39 H 1.09000 * 109.46805 * 66.99399 * 16 15 2 40 40 H 1.08990 * 109.47463 * 306.98894 * 16 15 2 41 41 H 1.09000 * 109.47330 * 186.98600 * 16 15 2 42 42 H 1.09007 * 109.47108 * 309.99875 * 17 15 2 43 43 H 1.09001 * 109.47529 * 69.99464 * 17 15 2 44 44 H 0.97000 * 119.99664 * 359.97438 * 20 18 17 45 45 H 1.09004 * 109.47322 * 299.99531 * 21 20 18 46 46 H 1.08998 * 109.47589 * 59.99864 * 21 20 18 47 47 H 0.97001 * 120.00143 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.9532 -2.0885 -1.3123 6 6 2.4076 -2.7420 -2.4411 7 6 2.9541 -2.0145 -3.4899 8 7 3.4206 -2.6754 -4.6349 9 6 3.4119 -4.0035 -4.8611 10 7 3.9304 -4.2164 -6.0435 11 6 4.2875 -3.0575 -6.5962 12 7 3.9955 -2.0851 -5.7723 13 6 3.0373 -0.6314 -3.4024 14 6 2.5761 0.0168 -2.2734 15 7 2.0197 -0.6926 1.1994 16 6 1.5059 -0.0577 2.4204 17 6 3.4875 -0.7484 1.2127 18 6 3.9453 -1.6685 2.3149 19 8 3.1291 -2.2228 3.0202 20 7 5.2617 -1.8755 2.5169 21 6 5.7066 -2.7695 3.5887 22 6 7.2125 -2.8278 3.6014 23 1 7.7811 -2.2558 2.8833 24 6 7.8642 -3.6107 4.5307 25 7 7.1718 -4.3060 5.4062 26 14 9.7307 -3.6835 4.5460 27 1 10.2689 -2.8169 3.4669 28 1 10.2338 -3.2086 5.8600 29 1 10.1733 -5.0833 4.3231 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.5313 -2.6540 -0.4946 34 1 2.3412 -3.8179 -2.5064 35 1 3.0398 -4.7597 -4.1858 36 1 4.7445 -2.9405 -7.5677 37 1 3.4616 -0.0630 -4.2168 38 1 2.6402 1.0927 -2.2050 39 1 0.4270 -0.2013 2.4782 40 1 1.7299 1.0087 2.3974 41 1 1.9797 -0.5097 3.2919 42 1 3.8456 -1.1237 0.2539 43 1 3.8876 0.2510 1.3840 44 1 5.9144 -1.4324 1.9525 45 1 5.3491 -2.3935 4.5473 46 1 5.3062 -3.7688 3.4181 47 1 7.6302 -4.8571 6.0597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027365213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:34 Heat of formation + Delta-G solvation = 75.490428 kcal Electronic energy + Delta-G solvation = -29112.803003 eV Core-core repulsion = 25104.145442 eV Total energy + Delta-G solvation = -4008.657561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.33997 -41.13887 -40.25734 -38.23549 -36.09434 -35.13387 -34.33286 -32.73864 -32.48664 -31.81331 -30.52448 -29.40720 -28.10790 -26.33651 -24.93183 -24.50398 -24.22576 -22.64779 -22.17466 -21.37883 -20.89876 -19.42442 -18.92466 -17.71695 -17.28500 -17.20611 -16.89135 -16.71387 -16.61305 -16.28016 -16.01824 -15.42727 -15.30299 -15.13879 -15.02878 -14.66424 -14.45237 -14.17624 -14.08705 -14.04570 -13.75384 -13.70210 -13.33602 -13.00806 -12.86221 -12.79559 -12.73518 -12.62814 -12.34705 -12.22466 -11.99368 -11.88361 -11.60085 -11.45560 -11.19883 -10.98334 -10.81132 -10.61945 -10.03115 -9.78183 -9.29019 -9.24951 -8.29643 -6.45675 -0.34222 0.32661 0.94818 1.16443 1.42372 1.43027 1.56352 1.82868 1.84925 2.26843 2.44995 2.69614 3.05368 3.10254 3.33224 3.39367 3.64685 3.80871 3.93508 3.96865 4.01644 4.19908 4.28634 4.36629 4.37145 4.41789 4.52941 4.58617 4.62962 4.68084 4.88224 4.96376 4.99318 5.05253 5.12522 5.15964 5.20478 5.26326 5.35630 5.38229 5.40045 5.50174 5.55568 5.66829 5.71039 5.86048 5.95560 6.00840 6.18046 6.66007 6.92550 6.96767 7.24038 7.54989 8.82603 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008155 B = 0.002862 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3432.591338 B = 9779.465442 C =12489.159111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.123 3.877 3 H 0.069 0.931 4 C -0.082 4.082 5 C -0.072 4.072 6 C -0.132 4.132 7 C 0.128 3.872 8 N -0.335 5.335 9 C 0.261 3.739 10 N -0.564 5.564 11 C 0.203 3.797 12 N -0.345 5.345 13 C -0.119 4.119 14 C -0.085 4.085 15 N -0.530 5.530 16 C 0.025 3.975 17 C 0.050 3.950 18 C 0.497 3.503 19 O -0.579 6.579 20 N -0.713 5.713 21 C 0.271 3.729 22 C -0.555 4.555 23 H 0.081 0.919 24 C 0.005 3.995 25 N -0.930 5.930 26 Si 0.981 3.019 27 H -0.255 1.255 28 H -0.278 1.278 29 H -0.279 1.279 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.254 0.746 36 H 0.252 0.748 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.405 0.595 45 H -0.013 1.013 46 H -0.014 1.014 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 10.685 -20.966 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.083 4.083 5 C -0.091 4.091 6 C -0.153 4.153 7 C 0.036 3.964 8 N -0.118 5.118 9 C -0.033 4.033 10 N -0.291 5.291 11 C -0.099 4.099 12 N -0.171 5.171 13 C -0.139 4.139 14 C -0.104 4.104 15 N -0.255 5.255 16 C -0.123 4.123 17 C -0.081 4.081 18 C 0.284 3.716 19 O -0.459 6.459 20 N -0.363 5.363 21 C 0.148 3.852 22 C -0.593 4.593 23 H 0.099 0.901 24 C -0.195 4.195 25 N -0.568 5.568 26 Si 0.805 3.195 27 H -0.178 1.178 28 H -0.204 1.204 29 H -0.205 1.205 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.270 0.730 36 H 0.268 0.732 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.100 0.900 44 H 0.240 0.760 45 H 0.005 0.995 46 H 0.004 0.996 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.177 10.137 -20.650 26.028 hybrid contribution 1.395 0.242 0.474 1.493 sum -10.782 10.380 -20.176 25.121 Atomic orbital electron populations 1.21862 0.91916 1.02876 1.02947 1.20686 0.96808 0.95079 0.85830 0.91289 1.19974 0.98798 0.93904 0.95656 1.20977 0.97334 0.94437 0.96354 1.21034 1.00755 1.01218 0.92260 1.17807 1.00954 0.92816 0.84796 1.47846 1.44271 1.06412 1.13317 1.26923 0.95333 0.86007 0.95047 1.70674 1.20864 1.29112 1.08414 1.26836 0.97275 0.84604 1.01190 1.78059 1.20183 1.23384 0.95468 1.20939 1.01453 0.91766 0.99753 1.21133 0.96469 1.01278 0.91513 1.61633 1.06408 1.54550 1.02873 1.22455 1.01662 0.96344 0.91844 1.21880 0.90160 0.98409 0.97655 1.21258 0.82102 0.82681 0.85594 1.90620 1.53793 1.51674 1.49859 1.46220 1.06999 1.47708 1.35422 1.18474 0.94361 0.87579 0.84825 1.21647 0.91100 1.28967 1.17540 0.90072 1.26024 1.04700 0.94349 0.94413 1.70133 1.38193 1.29344 1.19170 0.85160 0.77645 0.78220 0.78500 1.17804 1.20397 1.20471 0.91358 0.90429 0.92351 0.84716 0.83218 0.73036 0.73213 0.84764 0.82661 0.89945 0.94206 0.93003 0.86990 0.90016 0.75978 0.99507 0.99562 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.82 71.98 0.63 -1.26 16 2 C 0.12 1.98 2.25 44.17 0.10 2.08 16 3 H 0.07 0.90 7.94 -2.39 -0.02 0.88 16 4 C -0.08 -1.34 3.44 -19.84 -0.07 -1.41 16 5 C -0.07 -1.33 8.64 22.25 0.19 -1.13 16 6 C -0.13 -2.25 9.47 22.39 0.21 -2.04 16 7 C 0.13 2.46 6.70 38.09 0.26 2.71 16 8 N -0.33 -6.90 3.82 -191.26 -0.73 -7.63 16 9 C 0.26 4.67 11.98 180.26 2.16 6.83 16 10 N -0.56 -11.72 11.19 -203.73 -2.28 -14.00 16 11 C 0.20 3.79 13.03 180.75 2.35 6.14 16 12 N -0.34 -7.62 12.06 -61.21 -0.74 -8.36 16 13 C -0.12 -2.10 9.68 22.38 0.22 -1.88 16 14 C -0.09 -1.22 9.66 22.25 0.21 -1.01 16 15 N -0.53 -12.40 3.86 -906.06 -3.50 -15.90 16 16 C 0.02 0.59 8.61 127.69 1.10 1.69 16 17 C 0.05 1.28 5.18 85.56 0.44 1.72 16 18 C 0.50 19.07 7.45 87.66 0.65 19.72 16 19 O -0.58 -27.39 14.40 -3.04 -0.04 -27.43 16 20 N -0.71 -29.58 5.55 -466.79 -2.59 -32.17 16 21 C 0.27 14.71 5.43 85.64 0.46 15.17 16 22 C -0.55 -30.05 9.28 25.60 0.24 -29.81 16 23 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 24 C 0.00 0.26 5.46 84.66 0.46 0.73 16 25 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 26 Si 0.98 42.28 29.54 68.60 2.03 44.31 16 27 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 28 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 29 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 30 H 0.07 0.88 6.53 -2.39 -0.02 0.86 16 31 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.13 2.81 7.90 -2.91 -0.02 2.79 16 34 H 0.15 1.86 6.81 -2.91 -0.02 1.84 16 35 H 0.25 2.37 7.10 -2.91 -0.02 2.35 16 36 H 0.25 2.54 8.06 -2.91 -0.02 2.51 16 37 H 0.13 2.40 7.74 -2.91 -0.02 2.37 16 38 H 0.16 1.44 7.99 -2.91 -0.02 1.42 16 39 H 0.08 1.73 6.67 -2.39 -0.02 1.72 16 40 H 0.04 0.77 8.11 -2.39 -0.02 0.75 16 41 H 0.05 1.68 5.78 -2.39 -0.01 1.67 16 42 H 0.11 2.59 6.35 -2.38 -0.02 2.58 16 43 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 44 H 0.41 14.02 8.32 -92.71 -0.77 13.25 16 45 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 46 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -77.47 391.93 2.29 -75.18 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.23 Total: 23.33 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 9.63 Total: 18.24 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -9.55 Total: -133.62 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.04 Total: -27.43 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -77.47 2.29 -75.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027365213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.668 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds