Wall clock time and date at job start Tue Mar 31 2020 07:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47103 * 2 1 4 4 C 1.50704 * 109.47053 * 120.00195 * 2 1 3 5 5 C 1.38275 * 119.93150 * 260.00245 * 4 2 1 6 6 C 1.38119 * 120.06843 * 180.02562 * 5 4 2 7 7 C 1.38834 * 119.93028 * 0.02562 * 6 5 4 8 8 N 1.40201 * 120.06708 * 179.97438 * 7 6 5 9 9 C 1.34719 * 126.84558 * 179.97438 * 8 7 6 10 10 N 1.30848 * 108.03769 * 179.97438 * 9 8 7 11 11 C 1.33260 * 109.84056 * 0.02562 * 10 9 8 12 12 N 1.30753 * 109.00330 * 359.97438 * 11 10 9 13 13 C 1.38832 * 119.86808 * 0.25086 * 7 6 5 14 14 C 1.38120 * 119.93127 * 359.49459 * 13 7 6 15 15 N 1.46901 * 109.47148 * 240.00027 * 2 1 3 16 16 C 1.46897 * 110.99995 * 183.95511 * 15 2 1 17 17 C 1.46896 * 110.99950 * 59.99934 * 15 2 1 18 18 C 1.50705 * 109.47112 * 190.00003 * 17 15 2 19 19 O 1.21283 * 120.00038 * 359.97438 * 18 17 15 20 20 N 1.34775 * 120.00058 * 180.02562 * 18 17 15 21 21 C 1.46498 * 120.00187 * 180.02562 * 20 18 17 22 22 C 1.50695 * 109.47414 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99892 * 359.97438 * 22 21 20 24 24 C 1.37872 * 119.99968 * 180.02562 * 22 21 20 25 25 N 1.31516 * 120.00035 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00318 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47204 * 90.00406 * 26 24 22 28 28 H 1.48502 * 109.47411 * 210.00222 * 26 24 22 29 29 H 1.48506 * 109.47098 * 330.00068 * 26 24 22 30 30 H 1.08992 * 109.47276 * 299.99839 * 1 2 3 31 31 H 1.08998 * 109.47057 * 60.00324 * 1 2 3 32 32 H 1.09007 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.97036 * 0.03936 * 5 4 2 34 34 H 1.08001 * 120.03707 * 180.02562 * 6 5 4 35 35 H 1.08005 * 125.97969 * 0.02562 * 9 8 7 36 36 H 1.07997 * 125.50010 * 180.02562 * 11 10 9 37 37 H 1.08007 * 120.03341 * 179.73313 * 13 7 6 38 38 H 1.08001 * 119.96642 * 180.25540 * 14 13 7 39 39 H 1.08997 * 109.47209 * 59.99817 * 16 15 2 40 40 H 1.08997 * 109.47333 * 179.97438 * 16 15 2 41 41 H 1.09005 * 109.46871 * 300.00067 * 16 15 2 42 42 H 1.09001 * 109.47402 * 309.99797 * 17 15 2 43 43 H 1.09002 * 109.47166 * 70.00035 * 17 15 2 44 44 H 0.97004 * 119.99931 * 359.97438 * 20 18 17 45 45 H 1.09001 * 109.46673 * 299.99438 * 21 20 18 46 46 H 1.09002 * 109.47095 * 59.99186 * 21 20 18 47 47 H 0.96997 * 120.00153 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.4584 0.0209 2.3238 6 6 2.9198 -0.6273 3.4528 7 6 2.9560 -2.0147 3.4889 8 7 3.4244 -2.6756 4.6332 9 6 3.5178 -4.0071 4.8157 10 7 4.0011 -4.2190 6.0131 11 6 4.2270 -3.0555 6.6221 12 7 3.8899 -2.0814 5.8177 13 6 2.5329 -2.7462 2.3874 14 6 2.0676 -2.0924 1.2633 15 7 2.0197 -0.6925 -1.1994 16 6 3.4850 -0.7945 -1.1870 17 6 1.5486 -0.0264 -2.4210 18 6 1.8579 -0.8912 -3.6159 19 8 2.4163 -1.9572 -3.4647 20 7 1.5151 -0.4794 -4.8526 21 6 1.8152 -1.3203 -6.0141 22 6 1.3321 -0.6370 -7.2673 23 1 0.8494 0.3272 -7.2048 24 6 1.5055 -1.2430 -8.4935 25 7 1.0835 -0.6468 -9.5872 26 14 2.3399 -2.9108 -8.6015 27 1 1.3183 -3.9832 -8.4944 28 1 3.0457 -3.0279 -9.9028 29 1 3.3190 -3.0472 -7.4933 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.4302 1.1002 2.2952 34 1 3.2521 -0.0555 4.3067 35 1 3.2427 -4.7667 4.0988 36 1 4.6252 -2.9363 7.6189 37 1 2.5640 -3.8256 2.4110 38 1 1.7345 -2.6610 0.4076 39 1 3.8029 -1.3531 -0.3067 40 1 3.8209 -1.3117 -2.0858 41 1 3.9186 0.2052 -1.1591 42 1 0.4722 0.1324 -2.3564 43 1 2.0519 0.9346 -2.5280 44 1 1.0689 0.3733 -4.9735 45 1 2.8916 -1.4798 -6.0786 46 1 1.3114 -2.2809 -5.9071 47 1 1.2058 -1.0730 -10.4499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027365217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:39 Heat of formation + Delta-G solvation = 101.945476 kcal Electronic energy + Delta-G solvation = -28600.191492 eV Core-core repulsion = 24592.681108 eV Total energy + Delta-G solvation = -4007.510384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.71648 -40.29775 -39.15344 -37.29274 -34.55963 -34.20210 -32.39538 -32.10530 -31.67715 -31.20629 -29.53654 -28.73124 -27.00967 -24.97418 -24.23803 -23.88055 -22.40346 -21.74033 -21.53747 -20.33523 -19.78950 -18.80894 -17.51554 -16.51751 -16.46460 -16.23969 -15.97673 -15.62459 -15.43376 -15.14125 -14.62727 -14.57975 -14.55847 -14.32778 -14.03998 -13.79123 -13.58983 -13.33028 -13.14485 -12.71536 -12.67402 -12.59870 -12.32866 -12.21048 -11.93100 -11.76704 -11.44675 -11.32145 -11.17711 -11.03569 -10.88931 -10.75076 -10.54017 -10.32209 -10.00145 -9.52961 -9.41733 -9.21751 -8.80649 -8.63316 -8.40253 -8.14926 -6.24482 -4.26947 0.28335 0.93777 1.58202 1.76197 2.46611 3.19256 3.24873 3.26805 3.31507 3.39149 3.52229 3.80979 3.97948 4.17621 4.29599 4.30752 4.37597 4.49331 4.62494 4.88999 4.94529 4.99964 5.09402 5.11087 5.12495 5.20133 5.27594 5.37279 5.45623 5.54476 5.59626 5.61537 5.62097 5.69250 5.80806 5.94401 5.97924 6.01899 6.14195 6.23251 6.27524 6.61137 6.73438 6.87941 6.97145 7.04297 7.20578 7.36540 7.54882 8.11156 8.48629 8.72447 8.92034 9.35696 10.87426 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.001845 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.318793 B =15175.178295 C =16026.330778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.118 3.882 3 H 0.052 0.948 4 C -0.073 4.073 5 C -0.094 4.094 6 C -0.112 4.112 7 C 0.139 3.861 8 N -0.325 5.325 9 C 0.261 3.739 10 N -0.540 5.540 11 C 0.203 3.797 12 N -0.316 5.316 13 C -0.134 4.134 14 C -0.063 4.063 15 N -0.515 5.515 16 C 0.017 3.983 17 C 0.031 3.969 18 C 0.502 3.498 19 O -0.541 6.541 20 N -0.708 5.708 21 C 0.223 3.777 22 C -0.545 4.545 23 H 0.079 0.921 24 C 0.078 3.922 25 N -0.892 5.892 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.261 1.261 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.223 0.777 36 H 0.222 0.778 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.018 0.982 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.395 0.605 45 H 0.024 0.976 46 H 0.021 0.979 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 0.819 28.899 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.070 0.930 4 C -0.074 4.074 5 C -0.113 4.113 6 C -0.132 4.132 7 C 0.047 3.953 8 N -0.109 5.109 9 C -0.034 4.034 10 N -0.266 5.266 11 C -0.099 4.099 12 N -0.142 5.142 13 C -0.155 4.155 14 C -0.082 4.082 15 N -0.239 5.239 16 C -0.131 4.131 17 C -0.100 4.100 18 C 0.286 3.714 19 O -0.419 6.419 20 N -0.357 5.357 21 C 0.100 3.900 22 C -0.582 4.582 23 H 0.097 0.903 24 C -0.126 4.126 25 N -0.529 5.529 26 Si 0.704 3.296 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.185 1.185 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.239 0.761 36 H 0.239 0.761 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.037 0.963 42 H 0.123 0.877 43 H 0.079 0.921 44 H 0.229 0.771 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.010 -0.008 29.119 29.188 hybrid contribution 0.469 0.339 -0.449 0.733 sum 2.479 0.331 28.670 28.779 Atomic orbital electron populations 1.21934 0.92971 1.03372 1.02055 1.20595 0.96007 0.94843 0.87541 0.93025 1.19880 0.98514 0.94053 0.94969 1.20943 0.97962 1.00223 0.92150 1.20820 1.01112 0.91761 0.99496 1.17604 1.01127 0.92303 0.84261 1.47770 1.45893 1.05687 1.11560 1.26231 0.95808 0.85740 0.95638 1.70642 1.21502 1.28485 1.05944 1.26172 0.97941 0.85084 1.00699 1.78127 1.21025 1.22218 0.92826 1.20871 1.02242 1.00140 0.92220 1.21034 0.96114 0.94030 0.97000 1.61682 1.11596 1.50878 0.99761 1.22606 0.86089 0.99810 1.04574 1.22093 1.02645 0.95729 0.89565 1.20307 0.79757 0.87096 0.84251 1.90617 1.42405 1.23235 1.85669 1.46175 1.59584 1.23585 1.06352 1.19463 0.96309 0.90976 0.83220 1.21096 1.40734 1.07052 0.89366 0.90280 1.24799 0.94684 0.97796 0.95346 1.69879 1.45951 1.38818 0.98288 0.86811 0.80576 0.84219 0.78033 1.19831 1.20926 1.18535 0.91920 0.91667 0.91192 0.85058 0.84600 0.76075 0.76150 0.85020 0.83306 0.91466 0.88871 0.96317 0.87651 0.92143 0.77127 0.95820 0.96156 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.97 37.16 0.33 -0.81 16 2 C 0.12 1.05 2.28 -68.86 -0.16 0.89 16 3 H 0.05 0.42 8.00 -51.93 -0.42 0.01 16 4 C -0.07 -0.63 3.78 -104.59 -0.40 -1.02 16 5 C -0.09 -0.74 9.66 -39.61 -0.38 -1.12 16 6 C -0.11 -0.98 9.68 -39.40 -0.38 -1.36 16 7 C 0.14 1.26 6.70 -83.59 -0.56 0.70 16 8 N -0.33 -3.11 3.82 -11.81 -0.05 -3.16 16 9 C 0.26 2.13 11.98 -90.38 -1.08 1.05 16 10 N -0.54 -5.19 11.19 -15.75 -0.18 -5.37 16 11 C 0.20 1.76 13.03 -91.76 -1.20 0.57 16 12 N -0.32 -3.26 12.06 29.30 0.35 -2.91 16 13 C -0.13 -1.06 9.47 -39.40 -0.37 -1.43 16 14 C -0.06 -0.55 8.05 -39.61 -0.32 -0.87 16 15 N -0.51 -6.01 3.70 -237.73 -0.88 -6.89 16 16 C 0.02 0.21 8.77 60.06 0.53 0.73 16 17 C 0.03 0.38 5.26 -4.98 -0.03 0.35 16 18 C 0.50 8.80 7.52 -10.98 -0.08 8.72 16 19 O -0.54 -11.41 14.33 5.55 0.08 -11.33 16 20 N -0.71 -13.51 5.55 -61.47 -0.34 -13.85 16 21 C 0.22 5.30 4.50 -5.20 -0.02 5.28 16 22 C -0.54 -14.61 9.83 -34.44 -0.34 -14.94 16 23 H 0.08 2.20 7.84 -52.48 -0.41 1.79 16 24 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 25 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 26 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.49 6.20 -51.93 -0.32 0.16 16 32 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.13 0.79 8.03 -52.49 -0.42 0.37 16 34 H 0.14 1.18 7.74 -52.49 -0.41 0.77 16 35 H 0.22 0.90 7.10 -52.48 -0.37 0.53 16 36 H 0.22 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 0.72 6.81 -52.48 -0.36 0.36 16 38 H 0.15 1.44 7.71 -52.49 -0.40 1.03 16 39 H 0.07 0.77 6.11 -51.93 -0.32 0.45 16 40 H 0.09 1.44 5.82 -51.93 -0.30 1.13 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.11 1.09 5.83 -51.93 -0.30 0.78 16 43 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 44 H 0.40 6.57 8.32 -40.82 -0.34 6.23 16 45 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 46 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -34.20 386.97 -10.05 -44.25 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.42 Total: 3.51 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -4.56 Total: -1.21 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.32 Total: -57.50 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.20 -10.05 -44.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027365217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.196 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds