Wall clock time and date at job start Tue Mar 31 2020 07:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47103 * 2 1 4 4 C 1.50704 * 109.47053 * 120.00195 * 2 1 3 5 5 C 1.38275 * 119.93150 * 260.00245 * 4 2 1 6 6 C 1.38119 * 120.06843 * 180.02562 * 5 4 2 7 7 C 1.38834 * 119.93028 * 0.02562 * 6 5 4 8 8 N 1.40201 * 120.06708 * 179.97438 * 7 6 5 9 9 C 1.34719 * 126.84558 * 179.97438 * 8 7 6 10 10 N 1.30848 * 108.03769 * 179.97438 * 9 8 7 11 11 C 1.33260 * 109.84056 * 0.02562 * 10 9 8 12 12 N 1.30753 * 109.00330 * 359.97438 * 11 10 9 13 13 C 1.38832 * 119.86808 * 0.25086 * 7 6 5 14 14 C 1.38120 * 119.93127 * 359.49459 * 13 7 6 15 15 N 1.46901 * 109.47148 * 240.00027 * 2 1 3 16 16 C 1.46897 * 110.99995 * 183.95511 * 15 2 1 17 17 C 1.46896 * 110.99950 * 59.99934 * 15 2 1 18 18 C 1.50705 * 109.47112 * 190.00003 * 17 15 2 19 19 O 1.21283 * 120.00038 * 359.97438 * 18 17 15 20 20 N 1.34775 * 120.00058 * 180.02562 * 18 17 15 21 21 C 1.46498 * 120.00187 * 180.02562 * 20 18 17 22 22 C 1.50695 * 109.47414 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99892 * 359.97438 * 22 21 20 24 24 C 1.37872 * 119.99968 * 180.02562 * 22 21 20 25 25 N 1.31516 * 120.00035 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00318 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47204 * 90.00406 * 26 24 22 28 28 H 1.48502 * 109.47411 * 210.00222 * 26 24 22 29 29 H 1.48506 * 109.47098 * 330.00068 * 26 24 22 30 30 H 1.08992 * 109.47276 * 299.99839 * 1 2 3 31 31 H 1.08998 * 109.47057 * 60.00324 * 1 2 3 32 32 H 1.09007 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.97036 * 0.03936 * 5 4 2 34 34 H 1.08001 * 120.03707 * 180.02562 * 6 5 4 35 35 H 1.08005 * 125.97969 * 0.02562 * 9 8 7 36 36 H 1.07997 * 125.50010 * 180.02562 * 11 10 9 37 37 H 1.08007 * 120.03341 * 179.73313 * 13 7 6 38 38 H 1.08001 * 119.96642 * 180.25540 * 14 13 7 39 39 H 1.08997 * 109.47209 * 59.99817 * 16 15 2 40 40 H 1.08997 * 109.47333 * 179.97438 * 16 15 2 41 41 H 1.09005 * 109.46871 * 300.00067 * 16 15 2 42 42 H 1.09001 * 109.47402 * 309.99797 * 17 15 2 43 43 H 1.09002 * 109.47166 * 70.00035 * 17 15 2 44 44 H 0.97004 * 119.99931 * 359.97438 * 20 18 17 45 45 H 1.09001 * 109.46673 * 299.99438 * 21 20 18 46 46 H 1.09002 * 109.47095 * 59.99186 * 21 20 18 47 47 H 0.96997 * 120.00153 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.4584 0.0209 2.3238 6 6 2.9198 -0.6273 3.4528 7 6 2.9560 -2.0147 3.4889 8 7 3.4244 -2.6756 4.6332 9 6 3.5178 -4.0071 4.8157 10 7 4.0011 -4.2190 6.0131 11 6 4.2270 -3.0555 6.6221 12 7 3.8899 -2.0814 5.8177 13 6 2.5329 -2.7462 2.3874 14 6 2.0676 -2.0924 1.2633 15 7 2.0197 -0.6925 -1.1994 16 6 3.4850 -0.7945 -1.1870 17 6 1.5486 -0.0264 -2.4210 18 6 1.8579 -0.8912 -3.6159 19 8 2.4163 -1.9572 -3.4647 20 7 1.5151 -0.4794 -4.8526 21 6 1.8152 -1.3203 -6.0141 22 6 1.3321 -0.6370 -7.2673 23 1 0.8494 0.3272 -7.2048 24 6 1.5055 -1.2430 -8.4935 25 7 1.0835 -0.6468 -9.5872 26 14 2.3399 -2.9108 -8.6015 27 1 1.3183 -3.9832 -8.4944 28 1 3.0457 -3.0279 -9.9028 29 1 3.3190 -3.0472 -7.4933 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.4302 1.1002 2.2952 34 1 3.2521 -0.0555 4.3067 35 1 3.2427 -4.7667 4.0988 36 1 4.6252 -2.9363 7.6189 37 1 2.5640 -3.8256 2.4110 38 1 1.7345 -2.6610 0.4076 39 1 3.8029 -1.3531 -0.3067 40 1 3.8209 -1.3117 -2.0858 41 1 3.9186 0.2052 -1.1591 42 1 0.4722 0.1324 -2.3564 43 1 2.0519 0.9346 -2.5280 44 1 1.0689 0.3733 -4.9735 45 1 2.8916 -1.4798 -6.0786 46 1 1.3114 -2.2809 -5.9071 47 1 1.2058 -1.0730 -10.4499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027365217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:38 Heat of formation + Delta-G solvation = 80.801455 kcal Electronic energy + Delta-G solvation = -28601.108366 eV Core-core repulsion = 24592.681108 eV Total energy + Delta-G solvation = -4008.427258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.34813 -41.11948 -40.33561 -38.23060 -36.09161 -35.13477 -34.37581 -32.75663 -32.42264 -31.83858 -30.72189 -29.83176 -28.33236 -25.74129 -25.15629 -24.50027 -23.88856 -22.69348 -22.20147 -21.45634 -20.88726 -19.43153 -19.16202 -17.92194 -17.39025 -16.90007 -16.89139 -16.72226 -16.60722 -16.13978 -15.89539 -15.64523 -15.38690 -15.14626 -15.14219 -14.74297 -14.53238 -14.40717 -14.21606 -14.08800 -13.87197 -13.62926 -13.32723 -13.10522 -13.03106 -12.79437 -12.67396 -12.53679 -12.32462 -12.02429 -11.92927 -11.85225 -11.63551 -11.57407 -11.20571 -10.99497 -10.90571 -10.65190 -10.02719 -9.85550 -9.27885 -9.26543 -8.38893 -6.45496 -0.34134 0.32263 0.94674 1.15699 1.33327 1.35900 1.47835 1.81901 1.84103 2.28180 2.31552 2.70669 2.96821 3.07082 3.32587 3.38920 3.63396 3.80430 3.93557 3.96964 4.01252 4.23063 4.29478 4.33413 4.36845 4.42860 4.51959 4.59539 4.62133 4.65754 4.82580 4.89000 4.98534 4.99657 5.05401 5.06600 5.14955 5.18264 5.29167 5.34670 5.37125 5.39471 5.55153 5.59361 5.66705 5.91867 6.01270 6.11969 6.16341 6.56283 6.91869 6.92931 7.18227 7.50670 8.75728 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.001845 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.318793 B =15175.178295 C =16026.330778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.122 3.878 3 H 0.068 0.932 4 C -0.078 4.078 5 C -0.088 4.088 6 C -0.121 4.121 7 C 0.127 3.873 8 N -0.335 5.335 9 C 0.262 3.738 10 N -0.564 5.564 11 C 0.203 3.797 12 N -0.347 5.347 13 C -0.130 4.130 14 C -0.071 4.071 15 N -0.528 5.528 16 C 0.025 3.975 17 C 0.042 3.958 18 C 0.500 3.500 19 O -0.578 6.578 20 N -0.709 5.709 21 C 0.235 3.765 22 C -0.546 4.546 23 H 0.060 0.940 24 C 0.026 3.974 25 N -0.931 5.931 26 Si 0.937 3.063 27 H -0.265 1.265 28 H -0.275 1.275 29 H -0.261 1.261 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.256 0.744 36 H 0.251 0.749 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.131 0.869 43 H 0.084 0.916 44 H 0.408 0.592 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 0.916 30.501 30.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.014 3.986 3 H 0.086 0.914 4 C -0.079 4.079 5 C -0.107 4.107 6 C -0.141 4.141 7 C 0.035 3.965 8 N -0.118 5.118 9 C -0.032 4.032 10 N -0.291 5.291 11 C -0.099 4.099 12 N -0.173 5.173 13 C -0.151 4.151 14 C -0.090 4.090 15 N -0.253 5.253 16 C -0.123 4.123 17 C -0.088 4.088 18 C 0.287 3.713 19 O -0.458 6.458 20 N -0.360 5.360 21 C 0.111 3.889 22 C -0.584 4.584 23 H 0.078 0.922 24 C -0.174 4.174 25 N -0.570 5.570 26 Si 0.761 3.239 27 H -0.190 1.190 28 H -0.200 1.200 29 H -0.185 1.185 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.150 0.850 35 H 0.272 0.728 36 H 0.267 0.733 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.149 0.851 43 H 0.102 0.898 44 H 0.243 0.757 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.888 0.119 30.748 30.806 hybrid contribution 0.488 0.333 -0.873 1.054 sum 2.376 0.452 29.875 29.973 Atomic orbital electron populations 1.21938 0.92087 1.03002 1.03140 1.20651 0.96604 0.95217 0.86082 0.91444 1.19917 0.98779 0.94014 0.95153 1.21088 0.97070 1.01182 0.91372 1.20915 1.01459 0.91882 0.99805 1.17794 1.01533 0.92651 0.84504 1.47843 1.46267 1.06175 1.11564 1.26952 0.94512 0.85942 0.95822 1.70676 1.22549 1.29053 1.06805 1.26827 0.96948 0.84556 1.01574 1.78077 1.22306 1.23363 0.93538 1.21041 1.01337 1.01277 0.91429 1.21007 0.96707 0.94313 0.96986 1.61613 1.11121 1.52017 1.00502 1.22434 0.86796 1.00043 1.03033 1.22034 1.04454 0.95045 0.87275 1.21242 0.78189 0.87094 0.84810 1.90608 1.43760 1.25196 1.86201 1.46025 1.60298 1.23734 1.05930 1.19025 0.95016 0.90967 0.83909 1.21324 1.39942 1.06427 0.90684 0.92185 1.25593 0.95397 1.01272 0.95153 1.69982 1.47522 1.40577 0.98953 0.85866 0.79725 0.80144 0.78189 1.19038 1.20014 1.18499 0.90387 0.91028 0.92299 0.83044 0.84966 0.72813 0.73287 0.82867 0.84357 0.90938 0.92316 0.95183 0.85113 0.89778 0.75663 0.97224 0.97228 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.97 71.98 0.65 -1.20 16 2 C 0.12 1.82 2.28 44.17 0.10 1.92 16 3 H 0.07 0.84 8.00 -2.39 -0.02 0.82 16 4 C -0.08 -1.17 3.78 -19.85 -0.08 -1.25 16 5 C -0.09 -1.19 9.66 22.25 0.21 -0.98 16 6 C -0.12 -1.96 9.68 22.38 0.22 -1.74 16 7 C 0.13 2.15 6.70 38.09 0.26 2.41 16 8 N -0.33 -6.08 3.82 -191.26 -0.73 -6.81 16 9 C 0.26 3.91 11.98 180.26 2.16 6.07 16 10 N -0.56 -10.22 11.19 -203.73 -2.28 -12.50 16 11 C 0.20 3.32 13.03 180.75 2.35 5.68 16 12 N -0.35 -6.93 12.06 -61.21 -0.74 -7.67 16 13 C -0.13 -1.86 9.47 22.38 0.21 -1.65 16 14 C -0.07 -1.15 8.05 22.25 0.18 -0.98 16 15 N -0.53 -11.25 3.70 -906.05 -3.35 -14.61 16 16 C 0.02 0.58 8.77 127.69 1.12 1.70 16 17 C 0.04 0.93 5.26 85.56 0.45 1.38 16 18 C 0.50 17.02 7.52 87.66 0.66 17.68 16 19 O -0.58 -24.29 14.33 -3.04 -0.04 -24.33 16 20 N -0.71 -26.58 5.55 -466.79 -2.59 -29.17 16 21 C 0.23 11.19 4.50 85.63 0.38 11.57 16 22 C -0.55 -29.51 9.83 25.60 0.25 -29.26 16 23 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 24 C 0.03 1.45 5.47 84.65 0.46 1.92 16 25 N -0.93 -54.99 13.96 21.45 0.30 -54.69 16 26 Si 0.94 43.58 27.47 68.60 1.88 45.47 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 29 H -0.26 -12.02 6.54 99.48 0.65 -11.37 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.82 6.20 -2.39 -0.01 0.80 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.15 1.37 8.03 -2.91 -0.02 1.34 16 34 H 0.13 2.21 7.74 -2.91 -0.02 2.19 16 35 H 0.26 1.51 7.10 -2.91 -0.02 1.49 16 36 H 0.25 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.15 1.36 6.81 -2.91 -0.02 1.34 16 38 H 0.14 2.56 7.71 -2.91 -0.02 2.53 16 39 H 0.07 1.58 6.11 -2.39 -0.01 1.57 16 40 H 0.06 1.80 5.82 -2.39 -0.01 1.79 16 41 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.13 2.26 5.83 -2.39 -0.01 2.24 16 43 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 44 H 0.41 13.13 8.32 -92.71 -0.77 12.36 16 45 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 46 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 47 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -74.77 386.97 2.22 -72.55 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.18 Total: 18.48 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 9.59 Total: 13.28 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -9.39 Total: -125.44 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.04 Total: -24.33 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.47 kcal Total: -74.77 2.22 -72.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027365217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.349 kcal (2) G-P(sol) polarization free energy of solvation -74.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds