Wall clock time and date at job start Tue Mar 31 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46977 * 2 1 4 4 S 1.81401 * 109.46911 * 119.99329 * 2 1 3 5 5 C 1.76193 * 103.00274 * 295.00183 * 4 2 1 6 6 C 1.39203 * 119.71332 * 180.02562 * 5 4 2 7 7 C 1.38267 * 119.09744 * 180.02562 * 6 5 4 8 8 C 1.38913 * 118.50826 * 359.97438 * 7 6 5 9 9 C 1.38030 * 119.34181 * 0.25122 * 8 7 6 10 10 N 1.31957 * 120.86162 * 359.45919 * 9 8 7 11 11 C 1.50694 * 109.46961 * 239.99528 * 2 1 3 12 12 O 1.21285 * 119.99964 * 265.18586 * 11 2 1 13 13 N 1.34780 * 120.00148 * 85.19271 * 11 2 1 14 14 C 1.46505 * 119.99534 * 4.74441 * 13 11 2 15 15 C 1.50695 * 109.47204 * 90.00589 * 14 13 11 16 16 H 1.08006 * 120.00087 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00310 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99716 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00392 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46943 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47194 * 119.99581 * 19 17 15 22 22 H 1.48493 * 109.47115 * 239.99743 * 19 17 15 23 23 C 1.39919 * 120.00148 * 184.74284 * 13 11 2 24 24 C 1.38873 * 120.07245 * 292.72455 * 23 13 11 25 25 C 1.38114 * 119.92665 * 179.78997 * 24 23 13 26 26 C 1.38279 * 120.07313 * 0.48687 * 25 24 23 27 27 C 1.38281 * 120.14196 * 359.74453 * 26 25 24 28 28 C 1.38118 * 120.06856 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47317 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46985 * 300.00613 * 1 2 3 31 31 H 1.09000 * 109.46734 * 60.00136 * 1 2 3 32 32 H 1.08004 * 120.45095 * 359.97390 * 6 5 4 33 33 H 1.07995 * 120.74912 * 180.02562 * 7 6 5 34 34 H 1.08004 * 120.32928 * 179.97438 * 8 7 6 35 35 H 1.08009 * 119.56964 * 179.72253 * 9 8 7 36 36 H 1.09000 * 109.46406 * 210.00167 * 14 13 11 37 37 H 1.08997 * 109.47099 * 329.99853 * 14 13 11 38 38 H 0.97000 * 120.00323 * 180.02562 * 18 17 15 39 39 H 1.07996 * 120.03225 * 0.02836 * 24 23 13 40 40 H 1.07995 * 119.96195 * 180.23347 * 25 24 23 41 41 H 1.08000 * 119.93201 * 179.72098 * 26 25 24 42 42 H 1.08002 * 119.96777 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.03454 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8550 1.4813 5 6 1.5827 0.1848 2.7922 6 6 1.8680 -0.1573 4.1110 7 6 1.4283 0.6676 5.1298 8 6 0.7154 1.8120 4.7954 9 6 0.4640 2.0880 3.4666 10 7 0.9006 1.2858 2.5142 11 6 2.0323 -0.7105 -1.2304 12 8 2.3176 -1.8881 -1.1766 13 7 2.1647 -0.0373 -2.3905 14 6 1.9203 1.4066 -2.4314 15 6 3.2053 2.1418 -2.1501 16 1 4.1133 1.5888 -1.9594 17 6 3.2219 3.5204 -2.1350 18 7 2.1162 4.1938 -2.3667 19 14 4.8146 4.4317 -1.7856 20 1 5.9064 3.4511 -1.5588 21 1 5.1562 5.2940 -2.9452 22 1 4.6472 5.2744 -0.5744 23 6 2.5356 -0.7174 -3.5556 24 6 3.8064 -1.2664 -3.6663 25 6 4.1678 -1.9410 -4.8161 26 6 3.2694 -2.0612 -5.8603 27 6 2.0049 -1.5116 -5.7552 28 6 1.6356 -0.8399 -4.6062 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.4246 -1.0553 4.3354 33 1 1.6350 0.4280 6.1624 34 1 0.3576 2.4768 5.5677 35 1 -0.0938 2.9745 3.2026 36 1 1.5513 1.6847 -3.4186 37 1 1.1780 1.6710 -1.6783 38 1 2.1279 5.1637 -2.3565 39 1 4.5099 -1.1694 -2.8527 40 1 5.1546 -2.3714 -4.9013 41 1 3.5560 -2.5853 -6.7602 42 1 1.3052 -1.6075 -6.5723 43 1 0.6480 -0.4105 -4.5248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028205740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:27 Heat of formation + Delta-G solvation = 34.802530 kcal Electronic energy + Delta-G solvation = -26913.905184 eV Core-core repulsion = 23243.536199 eV Total energy + Delta-G solvation = -3670.368985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -39.98803 -39.82886 -38.02279 -35.13163 -33.09757 -32.68258 -32.15429 -31.17210 -30.52460 -29.37421 -27.14417 -24.51992 -23.66968 -23.50784 -23.15842 -22.12639 -21.77365 -19.15255 -17.94036 -17.04497 -16.69830 -16.26750 -16.14442 -16.06049 -15.50622 -15.03037 -14.79606 -14.47828 -14.16568 -14.10034 -13.92856 -13.57601 -13.20565 -13.04471 -12.96740 -12.63341 -12.29044 -12.16724 -11.95418 -11.64679 -11.51482 -11.42915 -11.25907 -11.05502 -10.85443 -10.78374 -10.25781 -10.01147 -9.93619 -9.85047 -9.65482 -9.43181 -9.26526 -8.65862 -8.59756 -8.51944 -7.73100 -7.33573 -6.23480 -4.30650 1.03790 1.27749 1.54152 1.77253 1.82112 2.42373 3.15874 3.19921 3.28427 3.33548 3.70947 3.75907 4.18610 4.31656 4.58875 4.81161 5.05427 5.08166 5.11035 5.13116 5.26445 5.28983 5.31129 5.35721 5.46814 5.67694 5.70819 5.80994 5.95979 5.96147 6.01333 6.03860 6.14307 6.23087 6.39315 6.43175 6.61729 6.63927 6.81513 6.86737 6.92119 7.10041 7.21425 7.56391 7.71693 7.85897 7.95895 8.04998 8.66350 8.81834 9.37097 10.83579 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.004290 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.755295 B = 6525.051439 C = 8383.164775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.142 0.858 4 S -0.018 6.018 5 C 0.118 3.882 6 C -0.157 4.157 7 C -0.060 4.060 8 C -0.190 4.190 9 C 0.118 3.882 10 N -0.481 5.481 11 C 0.542 3.458 12 O -0.545 6.545 13 N -0.553 5.553 14 C 0.234 3.766 15 C -0.540 4.540 16 H 0.062 0.938 17 C 0.069 3.931 18 N -0.888 5.888 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.173 3.827 24 C -0.102 4.102 25 C -0.114 4.114 26 C -0.134 4.134 27 C -0.115 4.115 28 C -0.124 4.124 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.265 0.735 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.421 -6.731 7.163 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.224 4.224 3 H 0.160 0.840 4 S 0.226 5.774 5 C -0.131 4.131 6 C -0.184 4.184 7 C -0.088 4.088 8 C -0.213 4.213 9 C -0.043 4.043 10 N -0.194 5.194 11 C 0.329 3.671 12 O -0.423 6.423 13 N -0.280 5.280 14 C 0.116 3.884 15 C -0.578 4.578 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.526 5.526 19 Si 0.722 3.278 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.082 3.918 24 C -0.122 4.122 25 C -0.133 4.133 26 C -0.152 4.152 27 C -0.133 4.133 28 C -0.144 4.144 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.882 -7.989 6.230 10.533 hybrid contribution 0.367 2.005 0.994 2.268 sum -2.515 -5.984 7.225 9.712 Atomic orbital electron populations 1.21943 0.90623 1.02559 1.04370 1.23439 1.01205 1.05429 0.92293 0.84043 1.85782 1.68317 1.28468 0.94878 1.23470 0.97109 0.95902 0.96623 1.21595 1.03236 1.01921 0.91626 1.21430 0.94676 0.93406 0.99286 1.22032 1.02334 0.99016 0.97964 1.22797 0.95266 0.97379 0.88838 1.68198 1.10980 1.03433 1.36784 1.19665 0.77428 0.86265 0.83717 1.90667 1.50958 1.15983 1.84722 1.45805 1.65809 1.11036 1.05368 1.19704 0.97785 0.71597 0.99307 1.21450 0.95219 0.91361 1.49782 0.91936 1.24889 0.96650 0.97306 0.94590 1.69919 1.26603 1.07648 1.48390 0.86469 0.83437 0.79807 0.78048 1.19535 1.20713 1.20761 1.17561 0.92515 0.94521 0.87248 1.21254 0.95229 0.97755 0.97923 1.20952 0.99440 0.99435 0.93468 1.21023 0.94244 1.01258 0.98703 1.20896 0.96593 0.98583 0.97259 1.21194 0.99222 1.00053 0.93883 0.92166 0.89778 0.91012 0.84545 0.84710 0.84926 0.82522 0.94095 0.93427 0.92485 0.86175 0.86270 0.86487 0.86191 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.82 37.16 0.33 -2.00 16 2 C -0.09 -1.79 1.84 -27.88 -0.05 -1.85 16 3 H 0.14 3.10 6.43 -51.92 -0.33 2.76 16 4 S -0.02 -0.31 20.64 -107.50 -2.22 -2.53 16 5 C 0.12 1.87 6.85 -16.92 -0.12 1.75 16 6 C -0.16 -2.01 9.84 -39.21 -0.39 -2.40 16 7 C -0.06 -0.63 10.17 -39.32 -0.40 -1.03 16 8 C -0.19 -2.01 10.10 -39.41 -0.40 -2.40 16 9 C 0.12 1.53 11.17 -17.57 -0.20 1.34 16 10 N -0.48 -7.83 7.45 -12.11 -0.09 -7.92 16 11 C 0.54 11.67 6.67 -10.99 -0.07 11.59 16 12 O -0.54 -12.54 15.71 5.55 0.09 -12.45 16 13 N -0.55 -12.06 2.51 -114.74 -0.29 -12.34 16 14 C 0.23 5.58 4.73 -5.19 -0.02 5.56 16 15 C -0.54 -14.18 9.08 -34.44 -0.31 -14.49 16 16 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -24.28 13.29 55.43 0.74 -23.55 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C 0.17 3.55 4.85 -83.70 -0.41 3.14 16 24 C -0.10 -1.98 9.33 -39.39 -0.37 -2.35 16 25 C -0.11 -1.84 10.04 -39.61 -0.40 -2.23 16 26 C -0.13 -1.95 10.04 -39.55 -0.40 -2.35 16 27 C -0.11 -1.74 10.04 -39.61 -0.40 -2.14 16 28 C -0.12 -2.23 9.65 -39.39 -0.38 -2.61 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.39 5.96 -51.93 -0.31 1.08 16 31 H 0.07 1.23 7.23 -51.93 -0.38 0.85 16 32 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.04 1.03 7.83 -51.93 -0.41 0.62 16 37 H 0.05 1.15 5.35 -51.93 -0.28 0.87 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 40 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -30.70 378.74 -10.64 -41.34 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.48 Total: 6.61 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -4.07 Total: -10.74 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.36 Total: -43.81 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.22 Total: -2.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.70 -10.64 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028205740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.141 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds