Wall clock time and date at job start Tue Mar 31 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46743 * 2 1 4 4 S 1.81394 * 109.47052 * 239.99524 * 2 1 3 5 5 C 1.76198 * 102.99827 * 65.00391 * 4 2 1 6 6 C 1.39202 * 119.71341 * 179.97438 * 5 4 2 7 7 C 1.38268 * 119.09738 * 179.76128 * 6 5 4 8 8 C 1.38909 * 118.50820 * 0.52411 * 7 6 5 9 9 C 1.38029 * 119.34156 * 359.45191 * 8 7 6 10 10 N 1.31956 * 120.85962 * 0.30632 * 9 8 7 11 11 C 1.50705 * 109.46570 * 119.99730 * 2 1 3 12 12 O 1.21289 * 119.99634 * 94.26917 * 11 2 1 13 13 N 1.34776 * 119.99938 * 274.25875 * 11 2 1 14 14 C 1.46499 * 119.99735 * 185.38155 * 13 11 2 15 15 C 1.50707 * 109.47163 * 90.00144 * 14 13 11 16 16 H 1.08000 * 119.99825 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99890 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00067 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00107 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47391 * 89.99891 * 19 17 15 21 21 H 1.48499 * 109.47362 * 209.99930 * 19 17 15 22 22 H 1.48501 * 109.47377 * 329.99855 * 19 17 15 23 23 C 1.39924 * 120.00109 * 5.37996 * 13 11 2 24 24 C 1.38868 * 120.07183 * 291.69571 * 23 13 11 25 25 C 1.38114 * 119.92866 * 179.76160 * 24 23 13 26 26 C 1.38279 * 120.06877 * 0.49131 * 25 24 23 27 27 C 1.38288 * 120.14451 * 359.76357 * 26 25 24 28 28 C 1.38114 * 120.06458 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.47317 * 60.00322 * 1 2 3 30 30 H 1.09006 * 109.46880 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47446 * 300.00277 * 1 2 3 32 32 H 1.07999 * 120.45186 * 359.97438 * 6 5 4 33 33 H 1.08003 * 120.74596 * 180.25245 * 7 6 5 34 34 H 1.08004 * 120.32888 * 179.73052 * 8 7 6 35 35 H 1.08000 * 119.56747 * 180.27238 * 9 8 7 36 36 H 1.09003 * 109.46910 * 209.99655 * 14 13 11 37 37 H 1.08996 * 109.47348 * 330.00515 * 14 13 11 38 38 H 0.96992 * 120.00037 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.03291 * 359.97438 * 24 23 13 40 40 H 1.08004 * 119.96464 * 180.25430 * 25 24 23 41 41 H 1.08000 * 119.93025 * 179.73965 * 26 25 24 42 42 H 1.07998 * 119.96872 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.03105 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 -1.4810 5 6 1.5828 0.1845 -2.7921 6 6 1.8681 -0.1578 -4.1109 7 6 1.4246 0.6647 -5.1300 8 6 0.7172 1.8124 -4.7955 9 6 0.4693 2.0908 -3.4665 10 7 0.9003 1.2853 -2.5143 11 6 2.0323 -0.7104 1.2306 12 8 2.3081 -1.8904 1.1794 13 7 2.1751 -0.0344 2.3878 14 6 2.7734 -0.6929 3.5516 15 6 4.2655 -0.4816 3.5366 16 1 4.7223 0.0868 2.7399 17 6 5.0472 -1.0130 4.5404 18 7 6.3493 -0.8290 4.5270 19 14 4.2569 -1.9955 5.9186 20 1 4.2068 -3.4301 5.5382 21 1 5.0577 -1.8402 7.1595 22 1 2.8779 -1.4973 6.1540 23 6 1.7520 1.2963 2.4775 24 6 2.4211 2.2882 1.7726 25 6 1.9979 3.6001 1.8595 26 6 0.9155 3.9277 2.6553 27 6 0.2504 2.9430 3.3626 28 6 0.6653 1.6285 3.2757 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.4254 -1.0553 -4.3351 33 1 1.6275 0.4225 -6.1628 34 1 0.3608 2.4780 -5.5678 35 1 -0.0841 2.9798 -3.2025 36 1 2.3554 -0.2679 4.4643 37 1 2.5574 -1.7607 3.5159 38 1 6.8992 -1.2031 5.2329 39 1 3.2693 2.0336 1.1545 40 1 2.5153 4.3714 1.3083 41 1 0.5891 4.9548 2.7248 42 1 -0.5944 3.2021 3.9836 43 1 0.1457 0.8600 3.8287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028205741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:33 Heat of formation + Delta-G solvation = 42.947105 kcal Electronic energy + Delta-G solvation = -27055.007770 eV Core-core repulsion = 23384.991960 eV Total energy + Delta-G solvation = -3670.015809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.17370 -40.02505 -38.23521 -35.04218 -33.41996 -32.65030 -32.17545 -31.35857 -30.74387 -29.64925 -27.77439 -24.69377 -23.86182 -23.69414 -22.60858 -22.34221 -21.93241 -19.27194 -18.34447 -16.98975 -16.93000 -16.58942 -16.44520 -16.13349 -15.69044 -15.15719 -14.84844 -14.40288 -14.33661 -14.20942 -13.96789 -13.82023 -13.56419 -13.21539 -13.10760 -12.75473 -12.47118 -12.35175 -12.14054 -11.92794 -11.78635 -11.63663 -11.34350 -11.10931 -10.88203 -10.59862 -10.25213 -10.20410 -10.13151 -9.86402 -9.67100 -9.60596 -9.52285 -8.73573 -8.65835 -8.59638 -7.82145 -7.50685 -6.11896 -4.11690 0.84553 1.08162 1.37592 1.50070 1.58601 2.22890 3.09329 3.27001 3.32442 3.34414 3.54997 3.58231 3.95847 4.36337 4.37765 4.63284 4.68122 4.90520 4.94477 5.03389 5.08081 5.12134 5.15048 5.20906 5.29470 5.29984 5.51257 5.61421 5.74937 5.75960 5.78575 5.86768 5.96330 5.97637 6.18996 6.20622 6.43052 6.50446 6.61528 6.67758 6.69746 6.85263 7.00679 7.23060 7.52535 7.62292 8.03936 8.39193 8.66204 8.90521 9.46575 11.01226 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.003838 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.045262 B = 7293.158372 C = 8634.855687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 H 0.123 0.877 4 S 0.000 6.000 5 C 0.113 3.887 6 C -0.154 4.154 7 C -0.058 4.058 8 C -0.189 4.189 9 C 0.114 3.886 10 N -0.488 5.488 11 C 0.537 3.463 12 O -0.513 6.513 13 N -0.548 5.548 14 C 0.218 3.782 15 C -0.532 4.532 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.893 5.893 19 Si 0.874 3.126 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.266 1.266 23 C 0.160 3.840 24 C -0.119 4.119 25 C -0.106 4.106 26 C -0.130 4.130 27 C -0.109 4.109 28 C -0.126 4.126 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.156 0.844 36 H 0.035 0.965 37 H 0.043 0.957 38 H 0.266 0.734 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.957 9.261 -14.891 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.236 4.236 3 H 0.141 0.859 4 S 0.243 5.757 5 C -0.135 4.135 6 C -0.181 4.181 7 C -0.086 4.086 8 C -0.212 4.212 9 C -0.046 4.046 10 N -0.201 5.201 11 C 0.323 3.677 12 O -0.389 6.389 13 N -0.276 5.276 14 C 0.099 3.901 15 C -0.570 4.570 16 H 0.094 0.906 17 C -0.127 4.127 18 N -0.531 5.531 19 Si 0.700 3.300 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.190 1.190 23 C 0.068 3.932 24 C -0.138 4.138 25 C -0.124 4.124 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.174 0.826 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.126 7.636 -13.814 21.182 hybrid contribution -0.573 0.658 0.009 0.873 sum -14.700 8.294 -13.805 21.805 Atomic orbital electron populations 1.21935 0.90467 1.03138 1.04018 1.23600 1.01686 1.04349 0.93928 0.85922 1.86223 1.67366 1.28137 0.93981 1.23563 0.97067 0.95973 0.96943 1.21637 1.02905 1.01948 0.91563 1.21469 0.94396 0.93286 0.99435 1.22030 1.02270 0.98990 0.97951 1.22741 0.95499 0.97401 0.88971 1.68157 1.11400 1.03696 1.36870 1.19503 0.78004 0.86955 0.83260 1.90715 1.49393 1.15001 1.83752 1.45473 1.59189 1.09816 1.13114 1.19863 0.94595 0.93804 0.81832 1.21239 0.89247 1.35351 1.11161 0.90561 1.24802 0.94675 0.95550 0.97652 1.69883 1.04175 1.45204 1.33871 0.86887 0.79769 0.81370 0.81950 1.19733 1.20897 1.19030 1.17679 0.93385 0.84534 0.97618 1.21373 0.99004 0.92556 1.00887 1.20978 0.96887 0.95626 0.98946 1.21072 0.96732 0.99085 0.97917 1.20945 0.99994 0.92372 0.99487 1.21253 0.96164 0.97032 1.00096 0.89782 0.91677 0.91368 0.84340 0.84557 0.84874 0.82650 0.94732 0.93867 0.92446 0.85760 0.85997 0.86265 0.86012 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.96 37.16 0.33 -1.65 16 2 C -0.10 -1.76 1.99 -27.88 -0.06 -1.82 16 3 H 0.12 2.05 5.27 -51.93 -0.27 1.78 16 4 S 0.00 0.00 20.65 -107.50 -2.22 -2.22 16 5 C 0.11 1.54 6.85 -16.92 -0.12 1.42 16 6 C -0.15 -1.70 9.84 -39.21 -0.39 -2.09 16 7 C -0.06 -0.50 10.17 -39.32 -0.40 -0.90 16 8 C -0.19 -1.54 10.10 -39.41 -0.40 -1.94 16 9 C 0.11 1.12 11.17 -17.58 -0.20 0.93 16 10 N -0.49 -6.31 7.45 -12.11 -0.09 -6.40 16 11 C 0.54 11.40 6.70 -10.98 -0.07 11.32 16 12 O -0.51 -12.65 15.71 5.55 0.09 -12.56 16 13 N -0.55 -11.73 2.50 -114.73 -0.29 -12.02 16 14 C 0.22 5.40 4.22 -5.19 -0.02 5.38 16 15 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 16 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 17 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 18 N -0.89 -27.57 13.96 55.43 0.77 -26.79 16 19 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 23 C 0.16 2.88 4.00 -83.70 -0.34 2.55 16 24 C -0.12 -1.98 7.83 -39.39 -0.31 -2.29 16 25 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 26 C -0.13 -1.57 10.04 -39.55 -0.40 -1.97 16 27 C -0.11 -1.39 10.04 -39.61 -0.40 -1.78 16 28 C -0.13 -1.94 9.41 -39.39 -0.37 -2.31 16 29 H 0.08 1.14 5.96 -51.93 -0.31 0.83 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.95 7.31 -51.93 -0.38 0.57 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.03 0.82 6.92 -51.93 -0.36 0.46 16 37 H 0.04 1.12 6.78 -51.93 -0.35 0.77 16 38 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.12 2.19 7.71 -52.49 -0.40 1.79 16 40 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -34.36 374.20 -10.20 -44.57 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.47 Total: 3.45 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.96 Total: -10.56 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.40 Total: -45.22 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.22 Total: -2.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.36 -10.20 -44.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028205741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.514 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds