Wall clock time and date at job start Tue Mar 31 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86798 * 120.00298 * 2 1 4 4 H 1.48501 * 109.47147 * 240.00021 * 3 2 1 5 5 H 1.48500 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47391 * 120.00056 * 3 2 1 7 7 C 1.39875 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99831 * 190.69769 * 7 2 1 9 9 C 1.41132 * 119.99887 * 10.70234 * 7 2 1 10 10 C 1.40887 * 120.16036 * 29.29459 * 9 7 2 11 11 C 1.36335 * 119.83812 * 180.25389 * 10 9 7 12 12 C 1.39566 * 120.16194 * 359.50285 * 11 10 9 13 13 N 1.38848 * 119.84356 * 180.26063 * 12 11 10 14 14 S 1.65602 * 120.00554 * 133.73650 * 13 12 11 15 15 O 1.42093 * 106.40308 * 52.15977 * 14 13 12 16 16 O 1.42097 * 106.40422 * 185.08357 * 14 13 12 17 17 C 1.76203 * 107.21284 * 298.61930 * 14 13 12 18 18 C 1.38254 * 120.02944 * 95.36158 * 17 14 13 19 19 C 1.38107 * 119.93034 * 179.97438 * 18 17 14 20 20 C 1.38498 * 120.21795 * 0.02562 * 19 18 17 21 21 C 1.38218 * 119.84829 * 0.02562 * 20 19 18 22 22 C 1.38105 * 120.03409 * 275.08588 * 17 14 13 23 23 C 1.51367 * 109.75683 * 180.02562 * 21 20 19 24 24 C 1.54350 * 105.17103 * 342.81102 * 23 21 20 25 25 C 1.51363 * 130.39061 * 180.02562 * 20 19 18 26 26 C 1.39570 * 120.31670 * 0.22691 * 12 11 10 27 27 C 1.36344 * 120.15700 * 0.02989 * 26 12 11 28 28 H 0.96992 * 119.99886 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.07858 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.92049 * 179.77587 * 11 10 9 31 31 H 0.97003 * 119.99960 * 313.72879 * 13 12 11 32 32 H 1.07990 * 120.03316 * 0.02562 * 18 17 14 33 33 H 1.07998 * 119.88926 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.89047 * 0.02562 * 22 17 14 35 35 H 1.08998 * 110.30382 * 223.88751 * 23 21 20 36 36 H 1.09001 * 110.38833 * 101.77897 * 23 21 20 37 37 H 1.09001 * 110.82304 * 268.12154 * 24 23 21 38 38 H 1.09000 * 110.99148 * 144.65311 * 24 23 21 39 39 H 1.09001 * 110.30619 * 316.08936 * 25 20 19 40 40 H 1.09003 * 110.30267 * 78.23923 * 25 20 19 41 41 H 1.08000 * 119.92028 * 180.02562 * 26 12 11 42 42 H 1.07998 * 120.07845 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2781 2.7464 -0.0006 6 1 3.0969 1.6963 1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 3.0743 -1.2196 0.1731 9 6 1.3211 -2.4228 -0.2281 10 6 0.1602 -2.4390 -1.0262 11 6 -0.5015 -3.6121 -1.2375 12 6 -0.0257 -4.7969 -0.6738 13 7 -0.7018 -5.9888 -0.8976 14 16 0.1392 -7.3511 -1.3211 15 8 1.1665 -7.5060 -0.3517 16 8 -0.8307 -8.3533 -1.5927 17 6 0.9455 -7.0116 -2.8507 18 6 2.2581 -6.5773 -2.8594 19 6 2.8882 -6.3123 -4.0594 20 6 2.2095 -6.4797 -5.2550 21 6 0.8969 -6.9129 -5.2461 22 6 0.2689 -7.1846 -4.0421 23 6 0.3826 -7.0162 -6.6660 24 6 1.3699 -6.1870 -7.5146 25 6 2.6667 -6.2617 -6.6814 26 6 1.1268 -4.7895 0.1134 27 6 1.7958 -3.6228 0.3374 28 1 -0.4849 0.8400 0.0004 29 1 -0.2066 -1.5236 -1.4666 30 1 -1.3936 -3.6254 -1.8461 31 1 -1.6669 -6.0237 -0.8059 32 1 2.7902 -6.4462 -1.9289 33 1 3.9134 -5.9727 -4.0655 34 1 -0.7551 -7.5277 -4.0346 35 1 -0.6211 -6.5969 -6.7361 36 1 0.3815 -8.0554 -6.9948 37 1 1.0290 -5.1560 -7.6085 38 1 1.5137 -6.6368 -8.4970 39 1 3.2224 -5.3274 -6.7618 40 1 3.2817 -7.0981 -7.0135 41 1 1.4895 -5.7102 0.5461 42 1 2.6877 -3.6186 0.9463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029972278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:52 Heat of formation + Delta-G solvation = -35.759922 kcal Electronic energy + Delta-G solvation = -27186.990499 eV Core-core repulsion = 23415.843035 eV Total energy + Delta-G solvation = -3771.147464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.103 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.11919 -38.10101 -36.84583 -35.81945 -35.51120 -34.80762 -32.81888 -31.57765 -29.63642 -29.25783 -28.71673 -27.49984 -24.76753 -23.06379 -21.57068 -21.35008 -20.98789 -20.84321 -18.89613 -17.54582 -17.33255 -17.02479 -16.57807 -15.92172 -15.66801 -15.33724 -15.19803 -14.67174 -14.09220 -13.88464 -13.55566 -13.35620 -13.07926 -12.86796 -12.80540 -12.55134 -12.38215 -12.14640 -11.95596 -11.85698 -11.67067 -11.54344 -11.39851 -11.35812 -11.20377 -11.14757 -11.01343 -10.95457 -10.64449 -10.52468 -10.13689 -9.80608 -9.36182 -9.04345 -8.96157 -8.68787 -7.67321 -7.17171 -6.81960 -4.43323 0.66486 0.98110 1.37365 2.64419 2.99058 3.01983 3.04351 3.10805 3.29310 3.59647 3.86491 4.07006 4.23284 4.33735 4.52144 4.72389 4.78448 4.91760 4.99392 5.16429 5.33864 5.44723 5.48313 5.53774 5.58406 5.58660 5.71324 5.90134 5.95326 6.05453 6.10034 6.19299 6.21801 6.25804 6.42836 6.48823 6.86679 6.90918 6.97873 7.00625 7.18689 7.35118 7.53126 7.90899 7.93118 7.97626 8.18854 8.51916 8.78328 8.85808 10.11594 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.003803 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.103467 B = 7361.459120 C = 8938.658579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.455 4.455 8 H 0.079 0.921 9 C 0.111 3.889 10 C -0.151 4.151 11 C -0.098 4.098 12 C -0.008 4.008 13 N -1.031 6.031 14 S 2.682 3.318 15 O -0.956 6.956 16 O -0.978 6.978 17 C -0.663 4.663 18 C -0.006 4.006 19 C -0.128 4.128 20 C -0.048 4.048 21 C -0.127 4.127 22 C -0.007 4.007 23 C -0.080 4.080 24 C -0.121 4.121 25 C -0.089 4.089 26 C -0.111 4.111 27 C -0.207 4.207 28 H 0.282 0.718 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.412 0.588 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -8.652 -12.011 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.108 3.892 10 C -0.171 4.171 11 C -0.120 4.120 12 C -0.104 4.104 13 N -0.783 5.783 14 S 2.775 3.225 15 O -0.946 6.946 16 O -0.968 6.968 17 C -0.749 4.749 18 C -0.025 4.025 19 C -0.147 4.147 20 C -0.048 4.048 21 C -0.127 4.127 22 C -0.027 4.027 23 C -0.117 4.117 24 C -0.158 4.158 25 C -0.126 4.126 26 C -0.132 4.132 27 C -0.228 4.228 28 H 0.093 0.907 29 H 0.140 0.860 30 H 0.110 0.890 31 H 0.247 0.753 32 H 0.162 0.838 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.142 0.858 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.310 -9.349 -11.577 14.939 hybrid contribution 0.017 1.344 -0.445 1.416 sum 1.327 -8.006 -12.022 14.504 Atomic orbital electron populations 1.69805 1.07449 1.29369 1.35564 1.25928 0.94871 1.01355 0.92313 0.86294 0.80006 0.80028 0.79986 1.18858 1.20306 1.18933 1.19570 0.96070 0.90563 1.42283 0.90288 1.17733 0.91350 0.92178 0.87990 1.21002 0.98493 0.96373 1.01218 1.20463 0.99324 0.92717 0.99484 1.16791 0.99457 0.84565 1.09576 1.52329 1.18326 1.25072 1.82603 1.02535 0.73395 0.72560 0.74002 1.93532 1.58683 1.85024 1.57320 1.93527 1.60742 1.56538 1.86034 1.30863 1.06928 1.17259 1.19845 1.20893 0.92221 0.90332 0.99064 1.20742 1.00554 1.02229 0.91169 1.20873 0.94360 0.94498 0.95057 1.20610 0.95432 1.01798 0.94899 1.20238 0.98984 0.93318 0.90129 1.21031 0.99650 1.00838 0.90210 1.22301 0.94457 1.00884 0.98173 1.21164 0.98326 1.02716 0.90352 1.21015 0.95892 0.99093 0.97186 1.20719 1.03084 0.92878 1.06073 0.90735 0.86013 0.89004 0.75260 0.83774 0.85344 0.85013 0.90481 0.90207 0.90687 0.90424 0.90110 0.89781 0.85787 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.69 10.86 55.54 0.60 -19.08 16 2 C 0.07 1.75 5.25 -17.34 -0.09 1.66 16 3 Si 0.91 17.93 29.57 -169.99 -5.03 12.90 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 7 C -0.45 -11.47 9.04 -37.87 -0.34 -11.81 16 8 H 0.08 1.90 7.87 -52.48 -0.41 1.49 16 9 C 0.11 2.80 5.55 -106.79 -0.59 2.20 16 10 C -0.15 -3.68 8.59 -39.27 -0.34 -4.02 16 11 C -0.10 -2.14 9.90 -39.77 -0.39 -2.54 16 12 C -0.01 -0.17 6.13 -83.69 -0.51 -0.68 16 13 N -1.03 -17.94 5.72 32.51 0.19 -17.76 16 14 S 2.68 46.13 5.63 -107.50 -0.61 45.52 16 15 O -0.96 -18.45 14.26 -57.17 -0.82 -19.26 16 16 O -0.98 -17.74 17.42 -57.17 -1.00 -18.73 16 17 C -0.66 -10.78 5.82 -39.62 -0.23 -11.01 16 18 C -0.01 -0.09 9.53 -39.62 -0.38 -0.47 16 19 C -0.13 -1.80 10.04 -39.53 -0.40 -2.19 16 20 C -0.05 -0.62 6.14 -104.21 -0.64 -1.26 16 21 C -0.13 -1.68 6.14 -104.21 -0.64 -2.32 16 22 C -0.01 -0.11 9.52 -39.54 -0.38 -0.49 16 23 C -0.08 -0.78 6.77 -26.85 -0.18 -0.96 16 24 C -0.12 -1.01 7.08 -25.33 -0.18 -1.19 16 25 C -0.09 -0.84 6.77 -26.86 -0.18 -1.02 16 26 C -0.11 -2.44 9.15 -39.77 -0.36 -2.80 16 27 C -0.21 -4.88 9.74 -39.26 -0.38 -5.26 16 28 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 29 H 0.12 3.08 6.25 -52.49 -0.33 2.75 16 30 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.41 6.11 8.95 -34.47 -0.31 5.80 16 32 H 0.14 2.28 7.51 -52.49 -0.39 1.88 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.13 1.74 7.73 -52.49 -0.41 1.33 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.12 2.64 5.67 -52.49 -0.30 2.35 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -29.87 361.24 -12.52 -42.39 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.09 Total: 12.73 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: -6.22 Total: -44.15 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.79 Total: -36.84 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.81 Total: -38.00 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: 46.13 SS G_CDS: -0.61 Total: 45.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.87 -12.52 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029972278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.630 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds