Wall clock time and date at job start Tue Mar 31 2020 07:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00272 * 2 1 4 4 H 1.48496 * 109.47315 * 240.00075 * 3 2 1 5 5 H 1.48506 * 109.46887 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47000 * 119.99789 * 3 2 1 7 7 C 1.37874 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47330 * 185.27712 * 9 7 2 11 11 C 1.46899 * 110.99910 * 62.13338 * 10 9 7 12 12 C 1.50703 * 109.46964 * 66.05206 * 11 10 9 13 13 N 1.29841 * 118.31696 * 359.97438 * 12 11 10 14 14 C 1.35649 * 121.61926 * 180.02562 * 13 12 11 15 15 C 1.39645 * 121.64718 * 180.02562 * 14 13 12 16 16 C 1.37665 * 119.68629 * 179.97438 * 15 14 13 17 17 C 1.38885 * 120.81998 * 359.97438 * 16 15 14 18 18 C 1.37770 * 120.56762 * 0.27718 * 17 16 15 19 19 C 1.39334 * 119.51730 * 359.49606 * 18 17 16 20 20 C 1.47043 * 121.94059 * 180.24439 * 19 18 17 21 21 O 1.21735 * 121.29439 * 0.18626 * 20 19 18 22 22 N 1.35337 * 117.40693 * 180.19114 * 20 19 18 23 23 H 0.97003 * 119.69773 * 180.02562 * 22 20 19 24 24 C 1.46900 * 110.99887 * 298.18626 * 10 9 7 25 25 C 1.53005 * 109.46940 * 287.90615 * 24 10 9 26 26 H 1.08996 * 109.87470 * 57.55860 * 25 24 10 27 27 C 1.54102 * 109.87868 * 178.56436 * 25 24 10 28 28 C 1.54809 * 104.18949 * 121.44800 * 27 25 24 29 29 C 1.54994 * 102.09170 * 20.88008 * 28 27 25 30 30 O 1.43743 * 109.87558 * 296.39196 * 25 24 10 31 31 H 0.97006 * 119.99353 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47483 * 65.27687 * 9 7 2 33 33 H 1.08998 * 109.46971 * 305.27528 * 9 7 2 34 34 H 1.09002 * 109.47707 * 306.05377 * 11 10 9 35 35 H 1.08994 * 109.47059 * 186.04668 * 11 10 9 36 36 H 1.08005 * 120.15542 * 359.95967 * 15 14 13 37 37 H 1.08001 * 119.59029 * 179.97438 * 16 15 14 38 38 H 1.08003 * 119.71620 * 179.97438 * 17 16 15 39 39 H 1.07996 * 120.23456 * 179.72182 * 18 17 16 40 40 H 1.09006 * 109.47122 * 47.89950 * 24 10 9 41 41 H 1.08998 * 109.47454 * 167.90447 * 24 10 9 42 42 H 1.08995 * 110.48827 * 240.12996 * 27 25 24 43 43 H 1.09009 * 110.48624 * 2.64345 * 27 25 24 44 44 H 1.09000 * 110.90773 * 139.07749 * 28 27 25 45 45 H 1.08998 * 110.91132 * 262.68462 * 28 27 25 46 46 H 1.09001 * 110.61668 * 81.47558 * 29 28 27 47 47 H 1.08995 * 110.62137 * 204.31494 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2004 -3.6128 0.1285 11 6 2.9300 -3.5389 1.4014 12 6 1.9705 -3.7528 2.5436 13 7 0.7188 -3.9581 2.2662 14 6 -0.2023 -4.1579 3.2417 15 6 -1.5486 -4.3793 2.9441 16 6 -2.4491 -4.5780 3.9662 17 6 -2.0357 -4.5617 5.2920 18 6 -0.7139 -4.3402 5.6110 19 6 0.2145 -4.1416 4.5912 20 6 1.6388 -3.9061 4.8708 21 8 2.0632 -3.8790 6.0114 22 7 2.4593 -3.7207 3.8107 23 1 3.4052 -3.5630 3.9569 24 6 3.1289 -3.6464 -1.0093 25 6 2.3856 -4.1188 -2.2604 26 1 1.5402 -3.4603 -2.4599 27 6 3.3426 -4.1231 -3.4682 28 6 3.3242 -5.5903 -3.9617 29 6 1.9957 -6.1178 -3.3625 30 8 1.9252 -5.4678 -2.0752 31 1 -0.4849 0.8402 0.0004 32 1 0.6974 -2.5991 -0.9331 33 1 0.5550 -2.5168 0.8392 34 1 3.3956 -2.5580 1.4969 35 1 3.6997 -4.3102 1.4242 36 1 -1.8818 -4.3944 1.9168 37 1 -3.4901 -4.7487 3.7342 38 1 -2.7575 -4.7192 6.0798 39 1 -0.3991 -4.3242 6.6440 40 1 3.5300 -2.6474 -1.1805 41 1 3.9463 -4.3337 -0.7911 42 1 2.9770 -3.4540 -4.2471 43 1 4.3476 -3.8349 -3.1597 44 1 3.3044 -5.6343 -5.0506 45 1 4.1759 -6.1443 -3.5668 46 1 1.1508 -5.8262 -3.9864 47 1 2.0300 -7.2010 -3.2469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032514558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:58 Heat of formation + Delta-G solvation = -15.479731 kcal Electronic energy + Delta-G solvation = -30559.385460 eV Core-core repulsion = 26514.490385 eV Total energy + Delta-G solvation = -4044.895074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.19634 -39.11718 -38.08998 -37.73502 -36.01499 -33.26896 -32.50369 -31.78042 -31.07262 -30.64961 -29.18450 -27.52942 -26.13502 -24.42770 -24.00623 -23.00005 -21.84287 -21.56115 -20.70815 -19.72374 -19.00820 -18.39341 -17.22055 -16.41163 -16.08619 -15.70860 -15.49552 -15.44100 -14.98883 -14.74944 -14.67884 -14.49089 -14.12437 -13.77872 -13.58722 -13.38966 -13.33696 -12.98404 -12.42876 -12.37816 -12.14067 -11.75476 -11.53033 -11.48047 -11.38629 -11.12798 -11.00235 -10.90959 -10.76502 -10.68130 -10.46489 -10.30488 -10.09094 -10.02724 -9.93616 -9.71916 -9.13173 -9.07397 -8.92001 -8.36998 -7.66303 -7.17420 -6.03464 -4.13311 0.84629 1.09027 2.53800 2.90704 3.07096 3.22969 3.29577 3.30732 4.27211 4.30002 4.32957 4.36220 4.50828 4.80085 4.84427 4.98431 5.07181 5.10156 5.22955 5.26115 5.27491 5.41826 5.49914 5.56516 5.59500 5.67580 5.82721 5.89455 5.90255 5.90886 5.97820 6.06733 6.16691 6.17627 6.24757 6.26703 6.44631 6.51787 6.58254 6.61753 6.69493 6.78523 7.04398 7.24716 7.44706 7.59271 7.95548 7.99466 8.02883 8.22483 8.35167 8.47923 8.99823 9.52370 11.00281 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008186 B = 0.004286 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.600376 B = 6531.369538 C = 8166.526738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.559 4.559 8 H 0.053 0.947 9 C 0.179 3.821 10 N -0.508 5.508 11 C 0.102 3.898 12 C 0.409 3.591 13 N -0.469 5.469 14 C 0.169 3.831 15 C -0.105 4.105 16 C -0.077 4.077 17 C -0.153 4.153 18 C -0.044 4.044 19 C -0.211 4.211 20 C 0.554 3.446 21 O -0.531 6.531 22 N -0.652 5.652 23 H 0.414 0.586 24 C 0.062 3.938 25 C 0.088 3.912 26 H 0.076 0.924 27 C -0.151 4.151 28 C -0.154 4.154 29 C 0.042 3.958 30 O -0.352 6.352 31 H 0.262 0.738 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -10.787 -0.252 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.598 4.598 8 H 0.071 0.929 9 C 0.054 3.946 10 N -0.231 5.231 11 C -0.029 4.029 12 C 0.141 3.859 13 N -0.188 5.188 14 C 0.058 3.942 15 C -0.124 4.124 16 C -0.097 4.097 17 C -0.171 4.171 18 C -0.064 4.064 19 C -0.217 4.217 20 C 0.347 3.653 21 O -0.408 6.408 22 N -0.295 5.295 23 H 0.252 0.748 24 C -0.066 4.066 25 C 0.030 3.970 26 H 0.094 0.906 27 C -0.189 4.189 28 C -0.192 4.192 29 C -0.036 4.036 30 O -0.271 6.271 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.617 -11.260 -0.089 11.376 hybrid contribution 1.641 2.201 0.548 2.799 sum 3.258 -9.060 0.459 9.639 Atomic orbital electron populations 1.69940 1.05874 1.26739 1.49428 1.24900 0.94681 0.98765 0.95026 0.86843 0.79825 0.83942 0.78482 1.20262 1.21231 1.20475 1.21766 0.92948 0.92617 1.52517 0.92896 1.20069 0.91378 0.83678 0.99474 1.62340 1.15471 1.47690 0.97602 1.20959 0.92174 1.01527 0.88258 1.23088 0.92099 0.86974 0.83707 1.68976 0.98500 1.20411 1.30957 1.19115 0.94503 0.93031 0.87536 1.20933 0.90438 1.00478 1.00559 1.21244 0.99615 0.96375 0.92419 1.21058 0.95513 1.03892 0.96637 1.20901 0.92293 0.94635 0.98526 1.20582 0.93226 1.12365 0.95497 1.18369 0.86661 0.76220 0.84037 1.90848 1.77915 1.51813 1.20232 1.44466 1.13913 1.64147 1.07002 0.74808 1.22168 0.94062 0.99570 0.90849 1.22739 0.96034 0.84492 0.93697 0.90619 1.22980 1.01015 0.96603 0.98352 1.23107 0.98992 0.96425 1.00666 1.23467 0.95829 0.97915 0.86353 1.89048 1.86642 1.24091 1.27336 0.92827 0.95463 0.91373 0.90443 0.89536 0.84063 0.85287 0.85577 0.85130 0.92173 0.92509 0.90927 0.90713 0.90983 0.90972 0.92861 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 13.29 55.43 0.74 -24.35 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.88 20.57 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.56 -14.12 7.33 -34.44 -0.25 -14.38 16 8 H 0.05 1.28 5.96 -52.48 -0.31 0.97 16 9 C 0.18 4.29 4.57 -4.97 -0.02 4.27 16 10 N -0.51 -9.95 4.27 -237.51 -1.01 -10.96 16 11 C 0.10 1.71 5.18 -4.97 -0.03 1.69 16 12 C 0.41 7.31 7.36 -155.22 -1.14 6.17 16 13 N -0.47 -9.36 7.07 -8.19 -0.06 -9.42 16 14 C 0.17 3.14 6.63 -84.51 -0.56 2.58 16 15 C -0.10 -1.72 10.03 -39.27 -0.39 -2.11 16 16 C -0.08 -1.02 10.00 -39.55 -0.40 -1.41 16 17 C -0.15 -1.96 10.02 -39.51 -0.40 -2.35 16 18 C -0.04 -0.67 9.68 -39.34 -0.38 -1.05 16 19 C -0.21 -3.73 5.89 -104.78 -0.62 -4.35 16 20 C 0.55 9.92 7.99 -12.44 -0.10 9.82 16 21 O -0.53 -10.28 17.48 5.16 0.09 -10.19 16 22 N -0.65 -10.34 5.27 -10.46 -0.06 -10.40 16 23 H 0.41 5.21 8.75 -40.82 -0.36 4.85 16 24 C 0.06 1.07 4.27 -3.82 -0.02 1.05 16 25 C 0.09 1.48 3.43 -26.15 -0.09 1.39 16 26 H 0.08 1.47 6.68 -51.93 -0.35 1.12 16 27 C -0.15 -1.96 6.64 -25.20 -0.17 -2.13 16 28 C -0.15 -1.70 7.15 -24.72 -0.18 -1.88 16 29 C 0.04 0.53 7.72 38.21 0.29 0.83 16 30 O -0.35 -6.08 11.12 -35.23 -0.39 -6.47 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.03 0.72 6.61 -51.93 -0.34 0.38 16 33 H 0.07 1.80 5.61 -51.93 -0.29 1.51 16 34 H 0.08 1.35 6.54 -51.93 -0.34 1.01 16 35 H 0.09 1.16 7.86 -51.93 -0.41 0.76 16 36 H 0.14 2.28 8.06 -52.48 -0.42 1.86 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.13 1.81 7.83 -52.49 -0.41 1.40 16 40 H 0.06 1.11 6.20 -51.93 -0.32 0.78 16 41 H 0.06 0.86 7.81 -51.93 -0.41 0.46 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.90 7.70 -51.92 -0.40 0.50 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -32.13 379.46 -10.99 -43.11 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.45 Total: 7.49 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -4.54 Total: -0.09 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.39 Total: -55.12 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.30 Total: -16.66 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.13 -10.99 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032514558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.634 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds