Wall clock time and date at job start Tue Mar 31 2020 06:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00090 * 2 1 4 4 H 1.48504 * 109.46937 * 239.72488 * 3 2 1 5 5 H 1.48502 * 109.46778 * 359.72342 * 3 2 1 6 6 H 1.48496 * 109.46937 * 119.72378 * 3 2 1 7 7 C 1.37874 * 119.99974 * 179.72085 * 2 1 3 8 8 H 1.08005 * 120.00370 * 180.27622 * 7 2 1 9 9 C 1.50702 * 119.99922 * 0.27783 * 7 2 1 10 10 N 1.46501 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.34256 * 125.14395 * 124.71995 * 10 9 7 12 12 C 1.38268 * 107.82703 * 179.84338 * 11 10 9 13 13 C 1.46743 * 126.83641 * 180.15804 * 12 11 10 14 14 C 1.35251 * 120.00078 * 312.71684 * 13 12 11 15 15 C 1.41546 * 120.00061 * 348.71702 * 14 13 12 16 16 O 1.21675 * 119.99610 * 353.14293 * 15 14 13 17 17 O 1.34953 * 119.99665 * 173.14168 * 15 14 13 18 18 C 1.46737 * 106.32383 * 0.41316 * 12 11 10 19 19 C 1.48253 * 126.50872 * 179.75214 * 18 12 11 20 20 C 1.39427 * 120.12538 * 324.96813 * 19 18 12 21 21 C 1.37975 * 119.86836 * 179.97438 * 20 19 18 22 22 C 1.38346 * 120.12879 * 359.97438 * 21 20 19 23 23 C 1.38308 * 120.26332 * 0.02562 * 22 21 20 24 24 N 1.48016 * 119.94275 * 179.97438 * 23 22 21 25 25 O 1.21805 * 119.99775 * 0.02562 * 24 23 22 26 26 O 1.21799 * 120.00288 * 180.02562 * 24 23 22 27 27 C 1.38028 * 120.12212 * 359.74667 * 23 22 21 28 28 N 1.31371 * 106.98206 * 359.74457 * 18 12 11 29 29 H 0.96996 * 120.00342 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47401 * 299.99632 * 9 7 2 31 31 H 1.09003 * 109.47438 * 59.99893 * 9 7 2 32 32 H 1.08002 * 126.08504 * 359.97438 * 11 10 9 33 33 H 1.08001 * 119.99486 * 132.71644 * 13 12 11 34 34 H 1.08001 * 120.00286 * 168.71888 * 14 13 12 35 35 H 0.96706 * 113.99580 * 179.97438 * 17 15 14 36 36 H 1.08003 * 120.06269 * 0.02562 * 20 19 18 37 37 H 1.08006 * 119.93361 * 180.02562 * 21 20 19 38 38 H 1.08005 * 119.86927 * 180.02562 * 22 21 20 39 39 H 1.07993 * 120.06736 * 180.25439 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1079 1.6935 -1.2092 5 1 1.2841 2.7464 -0.0068 6 1 3.0978 1.6993 1.2158 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1941 0.0103 9 6 1.2509 -2.4991 0.0058 10 7 2.2029 -3.6127 0.0120 11 6 2.2264 -4.6044 0.9166 12 6 3.2613 -5.4581 0.5821 13 6 3.6567 -6.6811 1.2901 14 6 3.7932 -6.6695 2.6357 15 6 3.7915 -5.4398 3.3366 16 8 3.7931 -4.3894 2.7223 17 8 3.7882 -5.4324 4.6861 18 6 3.8895 -4.8942 -0.6182 19 6 5.0503 -5.4533 -1.3516 20 6 6.0739 -6.0957 -0.6563 21 6 7.1516 -6.6145 -1.3442 22 6 7.2173 -6.4987 -2.7213 23 6 6.2049 -5.8626 -3.4164 24 7 6.2827 -5.7422 -4.8896 25 8 7.2376 -6.2037 -5.4887 26 8 5.3920 -5.1818 -5.5028 27 6 5.1197 -5.3438 -2.7393 28 7 3.2278 -3.8000 -0.9195 29 1 -0.4850 -0.8400 0.0004 30 1 0.6206 -2.5548 0.8933 31 1 0.6280 -2.5591 -0.8866 32 1 1.5549 -4.7166 1.7550 33 1 3.8386 -7.5905 0.7366 34 1 3.9036 -7.5984 3.1753 35 1 3.7876 -4.5468 5.0745 36 1 6.0230 -6.1877 0.4186 37 1 7.9449 -7.1127 -0.8067 38 1 8.0626 -6.9067 -3.2556 39 1 4.3277 -4.8509 -3.2834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033778920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:25 Heat of formation + Delta-G solvation = 28.390676 kcal Electronic energy + Delta-G solvation = -28748.711678 eV Core-core repulsion = 24434.052778 eV Total energy + Delta-G solvation = -4314.658900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.105 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.21301 -40.88936 -39.91932 -39.27856 -36.59556 -36.14074 -34.56153 -33.60208 -32.85503 -32.08020 -30.56509 -29.24160 -26.97145 -26.56538 -24.68026 -24.06419 -22.77637 -22.42239 -21.08403 -20.32821 -19.14144 -18.75500 -18.58412 -18.03210 -17.56110 -17.34739 -16.80558 -16.52463 -15.75901 -15.48369 -15.27157 -14.86046 -14.60423 -14.05171 -13.93275 -13.81606 -13.58035 -13.46889 -12.86856 -12.61716 -12.45748 -12.28277 -11.97924 -11.84352 -11.59407 -11.46527 -11.25435 -11.22447 -11.16751 -10.84590 -10.64794 -10.37589 -10.20687 -10.04271 -9.78410 -9.66285 -9.12170 -8.67306 -8.48634 -7.60521 -6.67255 -4.41942 -0.26149 0.54845 0.81946 1.23333 1.32333 2.46842 2.73427 3.01749 3.12773 3.33838 3.35977 3.42183 3.46401 3.54762 4.08989 4.25555 4.34169 4.50464 4.62439 4.67602 4.85717 4.94967 5.06222 5.08435 5.18532 5.32901 5.43581 5.51858 5.57573 5.70399 5.88716 5.96572 6.03894 6.09521 6.31212 6.37094 6.38508 6.53025 6.55006 6.83771 7.43652 7.52953 7.59442 8.03662 8.15526 8.21982 8.50539 9.25551 10.70717 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.007411 B = 0.004146 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.026044 B = 6751.168283 C = 9644.935526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.026 3.974 3 Si 1.076 2.924 4 H -0.284 1.284 5 H -0.279 1.279 6 H -0.286 1.286 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.243 3.757 10 N -0.303 5.303 11 C 0.132 3.868 12 C -0.258 4.258 13 C 0.073 3.927 14 C -0.246 4.246 15 C 0.498 3.502 16 O -0.495 6.495 17 O -0.520 6.520 18 C 0.092 3.908 19 C 0.017 3.983 20 C -0.051 4.051 21 C -0.115 4.115 22 C -0.060 4.060 23 C -0.042 4.042 24 N 0.030 4.970 25 O -0.165 6.165 26 O -0.156 6.156 27 C -0.033 4.033 28 N -0.251 5.251 29 H 0.266 0.734 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.166 0.834 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.405 0.595 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.757 -17.723 4.390 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.179 4.179 3 Si 0.902 3.098 4 H -0.210 1.210 5 H -0.204 1.204 6 H -0.212 1.212 7 C -0.646 4.646 8 H 0.083 0.917 9 C 0.125 3.875 10 N -0.079 5.079 11 C -0.020 4.020 12 C -0.270 4.270 13 C 0.053 3.947 14 C -0.266 4.266 15 C 0.344 3.656 16 O -0.385 6.385 17 O -0.331 6.331 18 C -0.073 4.073 19 C 0.014 3.986 20 C -0.071 4.071 21 C -0.134 4.134 22 C -0.079 4.079 23 C -0.125 4.125 24 N 0.549 4.451 25 O -0.380 6.380 26 O -0.373 6.373 27 C -0.053 4.053 28 N -0.072 5.072 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.183 0.817 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.261 0.739 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.246 -15.068 3.934 18.642 hybrid contribution 0.142 -1.699 0.671 1.833 sum 10.388 -16.768 4.605 20.255 Atomic orbital electron populations 1.70866 1.06769 1.30377 1.45696 1.25916 0.96248 1.02795 0.92918 0.83432 0.74869 0.74514 0.76969 1.20999 1.20391 1.21198 1.22027 0.95383 0.90100 1.57054 0.91728 1.19929 0.86337 0.82909 0.98312 1.48815 1.22435 1.18758 1.17875 1.22629 0.98475 0.87551 0.93369 1.19744 1.04480 1.01862 1.00953 1.21766 0.85221 0.95329 0.92378 1.21165 1.14507 0.96455 0.94466 1.19866 0.74050 0.90997 0.80652 1.91170 1.44898 1.34457 1.67933 1.85059 1.86690 1.38728 1.22590 1.21350 0.96354 0.94906 0.94694 1.17621 0.92843 0.97636 0.90466 1.21701 0.91394 0.92666 1.01326 1.21093 0.98995 1.00799 0.92473 1.21085 0.97002 0.95041 0.94804 1.20976 1.00981 1.10904 0.79663 1.43616 0.99756 0.98155 1.03566 1.94506 1.24563 1.49406 1.69525 1.94588 1.32246 1.42144 1.68283 1.21170 0.96184 0.94053 0.93908 1.77345 1.00267 1.15797 1.13837 0.92333 0.93581 0.94268 0.81698 0.84752 0.84434 0.73913 0.83765 0.83197 0.82948 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 13.65 55.43 0.76 -25.12 16 2 C 0.03 0.73 5.46 -17.82 -0.10 0.63 16 3 Si 1.08 24.94 29.90 -169.99 -5.08 19.86 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.61 -16.83 9.21 -34.44 -0.32 -17.14 16 8 H 0.06 1.90 7.81 -52.48 -0.41 1.48 16 9 C 0.24 5.91 5.52 -5.19 -0.03 5.88 16 10 N -0.30 -6.60 3.62 -61.93 -0.22 -6.83 16 11 C 0.13 2.37 8.51 -16.48 -0.14 2.23 16 12 C -0.26 -4.02 4.60 -103.02 -0.47 -4.50 16 13 C 0.07 0.78 8.37 -37.21 -0.31 0.47 16 14 C -0.25 -2.52 9.96 -39.39 -0.39 -2.91 16 15 C 0.50 6.47 7.70 31.99 0.25 6.72 16 16 O -0.50 -8.63 13.09 -19.40 -0.25 -8.88 16 17 O -0.52 -5.54 13.54 -41.19 -0.56 -6.10 16 18 C 0.09 1.60 6.94 -80.51 -0.56 1.04 16 19 C 0.02 0.24 5.84 -104.91 -0.61 -0.38 16 20 C -0.05 -0.52 9.17 -39.24 -0.36 -0.88 16 21 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 22 C -0.06 -0.57 9.55 -39.52 -0.38 -0.95 16 23 C -0.04 -0.55 6.85 -80.00 -0.55 -1.09 16 24 N 0.03 0.44 4.45 33.94 0.15 0.59 16 25 O -0.17 -2.39 18.44 -29.46 -0.54 -2.94 16 26 O -0.16 -2.56 18.44 -29.46 -0.54 -3.10 16 27 C -0.03 -0.46 9.27 -39.23 -0.36 -0.83 16 28 N -0.25 -5.43 12.27 34.60 0.42 -5.01 16 29 H 0.27 7.43 7.22 -40.82 -0.29 7.14 16 30 H 0.05 1.09 7.91 -51.93 -0.41 0.68 16 31 H 0.04 0.99 8.01 -51.93 -0.42 0.57 16 32 H 0.17 2.61 7.95 -52.49 -0.42 2.20 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.40 3.08 8.98 45.56 0.41 3.49 16 36 H 0.14 1.30 6.86 -52.48 -0.36 0.94 16 37 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.15 1.15 7.60 -52.48 -0.40 0.75 16 39 H 0.16 2.45 7.61 -52.49 -0.40 2.05 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -34.47 359.82 -7.94 -42.41 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -2.76 Total: 2.69 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -4.73 Total: -13.00 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 1.11 Total: -36.36 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.90 Total: -21.02 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.47 -7.94 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033778920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.803 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds