Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30924 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48504 * 109.46826 * 275.40361 * 3 2 1 5 5 H 1.48497 * 109.47122 * 35.40364 * 3 2 1 6 6 H 1.48498 * 109.46907 * 155.40789 * 3 2 1 7 7 C 1.39871 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00185 * 341.80932 * 7 2 1 9 9 C 1.41032 * 119.99770 * 161.81735 * 7 2 1 10 10 C 1.40819 * 120.22129 * 330.01747 * 9 7 2 11 11 C 1.36305 * 119.98528 * 180.25876 * 10 9 7 12 12 C 1.39481 * 120.45653 * 359.45280 * 11 10 9 13 13 O 1.35689 * 119.77524 * 180.28161 * 12 11 10 14 14 C 1.38968 * 120.45491 * 0.55400 * 12 11 10 15 15 C 1.38156 * 119.99991 * 359.72439 * 14 12 11 16 16 O 1.35654 * 120.22784 * 180.02562 * 15 14 12 17 17 C 1.42898 * 116.99843 * 359.97438 * 16 15 14 18 18 H 1.08998 * 109.48351 * 54.97884 * 17 16 15 19 19 O 1.42904 * 109.47892 * 294.93975 * 17 16 15 20 20 C 1.42907 * 114.09736 * 178.85736 * 19 17 16 21 21 H 1.08996 * 109.49438 * 301.17687 * 20 19 17 22 22 C 1.52994 * 109.48279 * 181.14518 * 20 19 17 23 23 O 1.42896 * 109.47545 * 65.05856 * 22 20 19 24 24 C 1.53090 * 109.41222 * 61.16255 * 20 19 17 25 25 H 1.09001 * 109.57794 * 62.32789 * 24 20 19 26 26 O 1.42899 * 109.52226 * 182.48595 * 24 20 19 27 27 C 1.53177 * 109.16279 * 302.39103 * 24 20 19 28 28 H 1.09000 * 109.54900 * 297.11112 * 27 24 20 29 29 O 1.42905 * 109.54450 * 176.84881 * 27 24 20 30 30 C 1.53092 * 109.48035 * 175.00263 * 17 16 15 31 31 H 1.09004 * 109.52635 * 57.68395 * 30 17 16 32 32 O 1.42901 * 109.52247 * 297.55831 * 30 17 16 33 33 H 0.96999 * 120.00212 * 0.02562 * 1 2 3 34 34 H 1.08000 * 120.00594 * 359.97438 * 10 9 7 35 35 H 1.07999 * 119.77016 * 179.69784 * 11 10 9 36 36 H 0.96705 * 114.00217 * 270.27446 * 13 12 11 37 37 H 1.08001 * 119.99769 * 179.75103 * 14 12 11 38 38 H 1.09003 * 109.47390 * 185.05999 * 22 20 19 39 39 H 1.09005 * 109.47190 * 305.06061 * 22 20 19 40 40 H 0.96701 * 114.00763 * 180.02562 * 23 22 20 41 41 H 0.96700 * 114.00260 * 179.68586 * 26 24 20 42 42 H 0.96701 * 114.00150 * 180.44398 * 29 27 24 43 43 H 0.96704 * 113.99574 * 60.00008 * 32 30 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.3765 2.1123 -1.3939 5 1 1.5024 2.6170 0.8111 6 1 3.5932 1.4099 0.5826 7 6 2.0086 -1.2113 0.0005 8 1 1.5091 -2.1231 0.2929 9 6 3.3661 -1.2419 -0.3806 10 6 3.8612 -0.3117 -1.3147 11 6 5.1728 -0.3490 -1.6836 12 6 6.0353 -1.2971 -1.1333 13 8 7.3398 -1.3181 -1.5062 14 6 5.5666 -2.2240 -0.2101 15 6 4.2393 -2.2069 0.1730 16 8 3.7770 -3.1091 1.0743 17 6 4.7186 -4.0526 1.5892 18 1 5.5697 -3.5214 2.0152 19 8 5.1677 -4.9029 0.5321 20 6 6.1372 -5.8725 0.9352 21 1 7.0070 -5.3654 1.3525 22 6 6.5634 -6.7024 -0.2774 23 8 7.2384 -5.8626 -1.2160 24 6 5.5259 -6.7932 1.9946 25 1 4.6807 -7.3321 1.5665 26 8 6.5110 -7.7271 2.4414 27 6 5.0472 -5.9482 3.1792 28 1 5.8998 -5.4488 3.6392 29 8 4.4091 -6.7912 4.1407 30 6 4.0504 -4.9002 2.6749 31 1 3.1752 -5.4001 2.2598 32 8 3.6506 -4.0592 3.7588 33 1 -0.4850 0.8400 -0.0004 34 1 3.2007 0.4282 -1.7422 35 1 5.5477 0.3629 -2.4039 36 1 7.5210 -1.8798 -2.2722 37 1 6.2400 -2.9574 0.2083 38 1 7.2340 -7.4990 0.0451 39 1 5.6818 -7.1378 -0.7478 40 1 7.5374 -6.3232 -2.0120 41 1 6.1934 -8.3400 3.1185 42 1 4.0745 -6.3202 4.9162 43 1 3.0216 -3.3683 3.5093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035465491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = -292.706723 kcal Electronic energy + Delta-G solvation = -31940.870719 eV Core-core repulsion = 27338.112231 eV Total energy + Delta-G solvation = -4602.758488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.133 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -40.69156 -38.96675 -37.59184 -37.51055 -36.51500 -36.17995 -35.57975 -35.21091 -33.27238 -31.08300 -30.39098 -29.80231 -28.97341 -26.24942 -24.63584 -23.84579 -22.39870 -21.53931 -20.94288 -20.64863 -18.67421 -18.06447 -17.66579 -17.55666 -17.42935 -17.24036 -16.63202 -16.24461 -15.61600 -15.44935 -15.21521 -14.92718 -14.67753 -14.39428 -14.11748 -13.96115 -13.80542 -13.66976 -13.06360 -12.90977 -12.88943 -12.68769 -12.47491 -12.44709 -11.91090 -11.74828 -11.54012 -11.19595 -11.00149 -10.84740 -10.73873 -10.29181 -10.28048 -10.12610 -10.10675 -10.07447 -9.90672 -9.60283 -9.42777 -9.20004 -7.66588 -7.29631 -6.99893 -4.43220 2.39214 2.53197 3.06268 3.08535 3.18400 3.29883 3.44831 3.61881 3.84568 3.87925 3.94617 4.34256 4.38707 4.59359 4.63670 4.77285 4.82694 4.95526 5.06792 5.12594 5.18273 5.31551 5.34257 5.40635 5.51174 5.57425 5.75427 5.95964 6.08352 6.42333 6.64507 6.79510 6.95243 7.04654 7.19511 7.21362 7.29487 7.47036 7.52336 7.56535 7.66216 7.80978 8.03896 8.30333 8.49133 8.69930 8.80146 10.01829 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012321 B = 0.004394 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.951860 B = 6371.055689 C = 8039.136020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.083 3.917 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.428 4.428 8 H 0.095 0.905 9 C 0.082 3.918 10 C -0.211 4.211 11 C -0.113 4.113 12 C -0.010 4.010 13 O -0.501 6.501 14 C -0.156 4.156 15 C 0.028 3.972 16 O -0.279 6.279 17 C 0.225 3.775 18 H 0.065 0.935 19 O -0.367 6.367 20 C 0.106 3.894 21 H 0.078 0.922 22 C 0.093 3.907 23 O -0.560 6.560 24 C 0.091 3.909 25 H 0.079 0.921 26 O -0.553 6.553 27 C 0.086 3.914 28 H 0.076 0.924 29 O -0.559 6.559 30 C 0.063 3.937 31 H 0.083 0.917 32 O -0.560 6.560 33 H 0.286 0.714 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.360 0.640 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.380 0.620 41 H 0.390 0.610 42 H 0.394 0.606 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 -12.397 3.647 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.456 4.456 8 H 0.113 0.887 9 C 0.078 3.922 10 C -0.231 4.231 11 C -0.131 4.131 12 C -0.055 4.055 13 O -0.308 6.308 14 C -0.176 4.176 15 C -0.016 4.016 16 O -0.194 6.194 17 C 0.129 3.871 18 H 0.082 0.918 19 O -0.288 6.288 20 C 0.048 3.952 21 H 0.096 0.904 22 C 0.015 3.985 23 O -0.365 6.365 24 C 0.031 3.969 25 H 0.097 0.903 26 O -0.360 6.360 27 C 0.026 3.974 28 H 0.094 0.906 29 O -0.366 6.366 30 C 0.002 3.998 31 H 0.101 0.899 32 O -0.369 6.369 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.212 0.788 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.226 0.774 41 H 0.239 0.761 42 H 0.243 0.757 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 9.100 -11.966 3.972 15.549 hybrid contribution -0.418 0.512 -0.184 0.686 sum 8.681 -11.454 3.788 14.863 Atomic orbital electron populations 1.69728 1.08010 1.30313 1.34749 1.26155 0.94745 1.01593 0.91074 0.86358 0.81412 0.79843 0.79001 1.19522 1.21660 1.16687 1.19280 0.92665 0.96237 1.37431 0.88673 1.17142 0.92754 0.90651 0.91613 1.20419 0.95243 1.04212 1.03222 1.20617 0.93485 0.98903 1.00133 1.17661 0.83496 1.00773 1.03588 1.84805 1.23875 1.70666 1.51483 1.20996 0.94211 1.00270 1.02089 1.18672 0.91531 0.95291 0.96075 1.86068 1.35746 1.40261 1.57338 1.23743 0.91398 0.85966 0.86008 0.91755 1.88142 1.59232 1.46568 1.34820 1.21781 0.91177 0.88716 0.93539 0.90435 1.22013 0.96231 0.91435 0.88863 1.86572 1.77834 1.38991 1.33138 1.22352 0.91811 0.90658 0.92084 0.90298 1.86401 1.39223 1.48556 1.61774 1.22499 0.94035 0.89890 0.90927 0.90633 1.86308 1.78542 1.37426 1.34371 1.22963 0.98701 0.91283 0.86808 0.89886 1.86242 1.67570 1.48748 1.34380 0.90367 0.87134 0.88068 0.78763 0.87049 0.91021 0.92673 0.77365 0.76051 0.75667 0.74693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.93 13.93 55.54 0.77 -20.16 16 2 C 0.08 2.14 5.40 -17.33 -0.09 2.05 16 3 Si 0.91 20.50 24.52 -169.99 -4.17 16.33 16 4 H -0.27 -5.88 6.71 56.52 0.38 -5.50 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.24 -5.72 6.86 56.52 0.39 -5.33 16 7 C -0.43 -11.40 9.18 -37.91 -0.35 -11.75 16 8 H 0.10 2.68 7.90 -52.49 -0.41 2.27 16 9 C 0.08 2.08 5.11 -106.65 -0.55 1.54 16 10 C -0.21 -5.12 7.10 -39.30 -0.28 -5.40 16 11 C -0.11 -2.54 9.91 -39.81 -0.39 -2.94 16 12 C -0.01 -0.23 6.72 -38.85 -0.26 -0.49 16 13 O -0.50 -9.99 13.48 -18.77 -0.25 -10.24 16 14 C -0.16 -3.55 8.55 -39.34 -0.34 -3.88 16 15 C 0.03 0.66 6.60 -38.40 -0.25 0.41 16 16 O -0.28 -6.02 8.99 -46.43 -0.42 -6.44 16 17 C 0.23 3.91 2.20 37.21 0.08 3.99 16 18 H 0.07 1.13 7.36 -51.93 -0.38 0.75 16 19 O -0.37 -6.34 8.53 -62.37 -0.53 -6.87 16 20 C 0.11 1.45 2.65 -26.69 -0.07 1.38 16 21 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 22 C 0.09 1.08 6.65 37.15 0.25 1.33 16 23 O -0.56 -7.20 13.63 -40.00 -0.54 -7.75 16 24 C 0.09 1.05 2.78 -26.59 -0.07 0.97 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 O -0.55 -5.53 12.68 -41.48 -0.53 -6.05 16 27 C 0.09 1.03 2.94 -26.55 -0.08 0.95 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 O -0.56 -5.90 12.94 -51.73 -0.67 -6.57 16 30 C 0.06 0.90 3.05 -26.59 -0.08 0.82 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 O -0.56 -7.77 12.94 -52.37 -0.68 -8.45 16 33 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 34 H 0.11 2.62 4.74 -52.49 -0.25 2.37 16 35 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.36 5.55 9.06 45.56 0.41 5.96 16 37 H 0.11 2.41 5.70 -52.49 -0.30 2.11 16 38 H 0.07 0.70 7.62 -51.93 -0.40 0.30 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.38 2.88 9.12 45.56 0.42 3.30 16 41 H 0.39 2.74 8.72 45.56 0.40 3.14 16 42 H 0.39 3.29 8.72 45.56 0.40 3.68 16 43 H 0.40 5.33 8.69 45.56 0.40 5.72 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -32.76 355.84 -5.57 -38.32 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -1.43 Total: 23.53 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.49 Total: -11.02 kcal Atomic # 7 Polarization: -20.93 SS G_CDS: 0.77 Total: -20.16 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -3.62 Total: -52.37 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.17 Total: 16.33 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.76 -5.57 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035465491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.383 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds