Wall clock time and date at job start Tue Mar 31 2020 06:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38408 * 119.91915 * 2 1 4 4 C 1.38362 * 120.31708 * 179.97438 * 3 2 1 5 5 C 1.37943 * 120.15734 * 359.78714 * 4 3 2 6 6 C 1.39701 * 119.83966 * 0.44525 * 5 4 3 7 7 N 1.36764 * 120.15829 * 179.81331 * 6 5 4 8 8 C 1.31194 * 119.99878 * 314.72442 * 7 6 5 9 9 N 1.33789 * 127.10444 * 359.97438 * 8 7 6 10 10 C 1.31368 * 112.46032 * 180.02562 * 9 8 7 11 11 S 1.76199 * 123.84843 * 180.02562 * 10 9 8 12 12 N 1.36959 * 112.29534 * 359.97438 * 10 9 8 13 13 C 1.36931 * 127.13165 * 180.02562 * 12 10 9 14 14 H 1.08007 * 119.99888 * 120.16224 * 13 12 10 15 15 C 1.38923 * 120.00658 * 300.15894 * 13 12 10 16 16 N 1.31454 * 119.99739 * 353.10766 * 15 13 12 17 17 Si 1.86795 * 120.00333 * 173.10446 * 15 13 12 18 18 H 1.48504 * 109.47061 * 60.00478 * 17 15 13 19 19 H 1.48498 * 109.47071 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47277 * 300.00541 * 17 15 13 21 21 C 1.46927 * 105.72816 * 0.02562 * 12 10 9 22 22 C 1.52421 * 110.56688 * 118.42595 * 21 12 10 23 23 C 1.53087 * 109.58836 * 64.47669 * 22 21 12 24 24 C 1.53006 * 109.41195 * 59.09243 * 23 22 21 25 25 C 1.53007 * 109.51774 * 299.50669 * 24 23 22 26 26 C 1.52424 * 110.56351 * 241.55604 * 21 12 10 27 27 C 1.37899 * 119.91696 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46656 * 270.02258 * 1 2 3 29 29 H 1.08996 * 109.47117 * 30.02061 * 1 2 3 30 30 H 1.08997 * 109.47492 * 150.02372 * 1 2 3 31 31 H 1.07991 * 119.84316 * 359.97438 * 3 2 1 32 32 H 1.07991 * 119.92028 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.08343 * 180.25487 * 5 4 3 34 34 H 1.40992 * 100.00340 * 359.97438 * 11 10 9 35 35 H 0.96993 * 120.00223 * 179.97438 * 16 15 13 36 36 H 1.08999 * 109.45123 * 184.51488 * 22 21 12 37 37 H 1.09000 * 109.44868 * 304.44136 * 22 21 12 38 38 H 1.09003 * 109.48176 * 299.11023 * 23 22 21 39 39 H 1.09003 * 109.48952 * 179.07937 * 23 22 21 40 40 H 1.09005 * 109.46699 * 179.48927 * 24 23 22 41 41 H 1.09006 * 109.46570 * 59.51806 * 24 23 22 42 42 H 1.09011 * 109.47712 * 300.50618 * 25 24 23 43 43 H 1.09000 * 109.49176 * 180.48390 * 25 24 23 44 44 H 1.08998 * 109.45758 * 55.55198 * 26 21 12 45 45 H 1.09001 * 109.44982 * 175.50120 * 26 21 12 46 46 H 1.07999 * 120.08366 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1996 0.0000 4 6 3.5810 1.2092 0.0005 5 6 4.2822 0.0214 0.0055 6 6 3.5921 -1.1933 0.0006 7 7 4.2808 -2.3748 0.0016 8 6 5.3054 -2.5376 -0.8015 9 7 5.7960 -1.6499 -1.6740 10 6 6.8317 -2.1152 -2.3347 11 16 7.7095 -1.1977 -3.5563 12 7 7.1519 -3.3945 -1.9649 13 6 8.1710 -4.1662 -2.4557 14 1 8.9398 -4.5318 -1.7910 15 6 8.2161 -4.4791 -3.8085 16 7 7.2134 -4.1511 -4.5927 17 14 9.7015 -5.3659 -4.5131 18 1 9.8620 -6.6778 -3.8360 19 1 9.5050 -5.5806 -5.9692 20 1 10.9186 -4.5438 -4.2942 21 6 6.1751 -3.7669 -0.9325 22 6 5.3447 -4.9616 -1.3870 23 6 6.2501 -6.1861 -1.5436 24 6 6.9273 -6.4921 -0.2061 25 6 7.7767 -5.2939 0.2228 26 6 6.8779 -4.0655 0.3867 27 6 2.1948 -1.1952 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6536 2.1326 -0.0004 32 1 4.1131 2.1489 0.0001 33 1 5.3622 0.0303 0.0101 34 1 6.9770 0.0068 -3.5312 35 1 7.2450 -4.3692 -5.5373 36 1 4.5748 -5.1719 -0.6447 37 1 4.8739 -4.7336 -2.3433 38 1 7.0103 -5.9821 -2.2977 39 1 5.6521 -7.0433 -1.8528 40 1 7.5653 -7.3694 -0.3143 41 1 6.1667 -6.6874 0.5499 42 1 8.5318 -5.0929 -0.5372 43 1 8.2657 -5.5157 1.1714 44 1 7.4847 -3.2079 0.6770 45 1 6.1334 -4.2613 1.1584 46 1 1.6548 -2.1305 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036383707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:55 Heat of formation + Delta-G solvation = 82.499954 kcal Electronic energy + Delta-G solvation = -28644.530809 eV Core-core repulsion = 25046.637323 eV Total energy + Delta-G solvation = -3597.893485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.141 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.83980 -38.68320 -36.44484 -35.01414 -33.47773 -31.79305 -30.91493 -30.25041 -30.11362 -28.21822 -26.28970 -25.19126 -24.06707 -22.10962 -21.89008 -21.12882 -20.92401 -18.98648 -18.84824 -17.95997 -16.32263 -15.98694 -15.51814 -15.19952 -15.12059 -14.69006 -14.32178 -14.04092 -13.80670 -13.51514 -13.32080 -13.30879 -13.02949 -12.53674 -12.37503 -12.08296 -11.93852 -11.86201 -11.62313 -11.52735 -11.44536 -11.39807 -11.26485 -11.02554 -10.77802 -10.65182 -10.49441 -10.41632 -10.11747 -10.09205 -9.75753 -9.61646 -9.28291 -9.07442 -8.45139 -8.15751 -7.78360 -7.50013 -6.83064 -6.56944 -4.70761 1.49816 1.95700 2.02513 2.45881 2.94574 2.96173 3.01374 3.02240 3.71764 4.05195 4.32950 4.57114 4.61245 4.78984 5.27784 5.31401 5.35893 5.38838 5.56521 5.67321 5.69329 5.75550 5.80623 5.91642 6.03815 6.05430 6.09067 6.13303 6.14158 6.16424 6.19565 6.28706 6.32580 6.43630 6.55966 6.62622 6.67880 6.72360 6.81490 6.89820 6.93968 7.06333 7.12709 7.14452 7.20050 7.32184 7.38369 7.73208 8.00741 8.44447 8.74044 9.16047 9.23322 10.18519 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014370 B = 0.004099 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.040035 B = 6829.619280 C = 7868.938621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.081 4.081 3 C -0.164 4.164 4 C -0.107 4.107 5 C -0.145 4.145 6 C 0.166 3.834 7 N -0.571 5.571 8 C 0.392 3.608 9 N -0.667 5.667 10 C 0.393 3.607 11 S 0.015 5.985 12 N -0.370 5.370 13 C -0.334 4.334 14 H 0.110 0.890 15 C 0.062 3.938 16 N -0.816 5.816 17 Si 0.920 3.080 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.263 1.263 21 C 0.142 3.858 22 C -0.079 4.079 23 C -0.130 4.130 24 C -0.108 4.108 25 C -0.134 4.134 26 C -0.089 4.089 27 C -0.140 4.140 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.283 0.717 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 0.844 3.252 3.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.082 4.082 3 C -0.183 4.183 4 C -0.126 4.126 5 C -0.167 4.167 6 C 0.062 3.938 7 N -0.297 5.297 8 C 0.114 3.886 9 N -0.414 5.414 10 C 0.018 3.982 11 S 0.173 5.827 12 N -0.064 5.064 13 C -0.462 4.462 14 H 0.127 0.873 15 C -0.153 4.153 16 N -0.445 5.445 17 Si 0.744 3.256 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.188 1.188 21 C 0.051 3.949 22 C -0.118 4.118 23 C -0.167 4.167 24 C -0.146 4.146 25 C -0.171 4.171 26 C -0.128 4.128 27 C -0.161 4.161 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.125 0.875 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.647 1.189 2.869 3.173 hybrid contribution -0.074 -0.187 -0.137 0.244 sum -0.722 1.002 2.732 2.998 Atomic orbital electron populations 1.20709 0.92008 1.02048 1.01602 1.19596 0.95210 0.93078 1.00282 1.20708 0.94076 0.96644 1.06902 1.20857 0.94052 0.97384 1.00259 1.21661 0.99778 0.92312 1.02901 1.18635 0.92443 0.89456 0.93297 1.69209 1.11368 1.22347 1.26784 1.22665 0.88714 0.89868 0.87344 1.70754 1.17256 1.33448 1.19894 1.25411 0.93752 0.85914 0.93089 1.86862 1.38140 1.12236 1.45462 1.43733 1.24025 1.07437 1.31196 1.19334 1.01944 1.32376 0.92594 0.87304 1.25804 0.97537 0.95287 0.96661 1.69887 1.28831 1.39060 1.06735 0.86069 0.81018 0.80044 0.78435 1.19052 1.20228 1.18778 1.20530 0.89624 0.93894 0.90826 1.21213 0.96634 0.92880 1.01061 1.21754 1.00255 0.95796 0.98881 1.21412 0.98451 0.97269 0.97445 1.21926 0.99289 0.94371 1.01515 1.21352 0.98673 0.98299 0.94524 1.20755 0.92633 0.97017 1.05678 0.91788 0.92160 0.92015 0.87425 0.87399 0.86594 0.95377 0.90636 0.91634 0.91972 0.87545 0.93608 0.92853 0.93326 0.88625 0.93173 0.92508 0.90865 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 36.01 0.36 -1.02 16 2 C -0.08 -1.37 5.87 -104.68 -0.61 -1.99 16 3 C -0.16 -2.73 9.69 -39.47 -0.38 -3.11 16 4 C -0.11 -1.90 10.03 -39.64 -0.40 -2.30 16 5 C -0.15 -3.00 8.73 -39.14 -0.34 -3.35 16 6 C 0.17 3.60 6.09 -84.56 -0.51 3.09 16 7 N -0.57 -12.93 10.53 -8.36 -0.09 -13.01 16 8 C 0.39 8.88 6.35 -155.74 -0.99 7.89 16 9 N -0.67 -15.52 9.04 -10.11 -0.09 -15.61 16 10 C 0.39 8.77 7.55 -87.87 -0.66 8.11 16 11 S 0.01 0.29 24.51 -107.50 -2.63 -2.35 16 12 N -0.37 -7.97 2.34 -102.96 -0.24 -8.21 16 13 C -0.33 -6.94 5.73 -15.02 -0.09 -7.02 16 14 H 0.11 2.17 5.19 -52.48 -0.27 1.90 16 15 C 0.06 1.30 4.12 -17.46 -0.07 1.22 16 16 N -0.82 -18.29 12.43 55.50 0.69 -17.60 16 17 Si 0.92 16.47 29.56 -169.99 -5.02 11.44 16 18 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 19 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 21 C 0.14 2.93 0.83 -133.11 -0.11 2.82 16 22 C -0.08 -1.58 4.97 -26.98 -0.13 -1.71 16 23 C -0.13 -2.34 5.65 -26.68 -0.15 -2.49 16 24 C -0.11 -1.70 5.91 -26.72 -0.16 -1.86 16 25 C -0.13 -2.18 5.64 -26.68 -0.15 -2.33 16 26 C -0.09 -1.64 4.97 -26.98 -0.13 -1.77 16 27 C -0.14 -2.74 9.64 -39.15 -0.38 -3.12 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.12 2.52 7.15 -52.48 -0.38 2.14 16 34 H 0.08 1.49 9.55 96.90 0.93 2.41 16 35 H 0.28 6.08 8.31 -40.82 -0.34 5.74 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.11 2.13 4.71 -51.93 -0.24 1.89 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.66 4.16 -51.92 -0.22 1.45 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 374.19 15.07 5.64 5.64 Total: -1.00 -24.83 374.19 -11.90 -36.73 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.23 Total: 11.89 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -4.92 Total: -8.93 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.27 Total: -54.43 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.02 Total: 11.44 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.63 Total: -2.35 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -24.83 -11.90 -36.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036383707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.233 kcal (2) G-P(sol) polarization free energy of solvation -24.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds