Wall clock time and date at job start Tue Mar 31 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52265 * 109.72325 * 2 1 4 4 C 1.53343 * 106.50444 * 314.34321 * 3 2 1 5 5 C 1.50001 * 112.61526 * 318.43351 * 4 3 2 6 6 C 1.34344 * 118.55861 * 182.23889 * 5 4 3 7 7 C 1.50940 * 120.29491 * 5.31923 * 6 5 4 8 8 C 1.53278 * 108.35144 * 137.15820 * 7 6 5 9 9 C 1.50439 * 109.73932 * 50.12125 * 8 7 6 10 10 O 1.21474 * 119.07981 * 145.73106 * 9 8 7 11 11 C 1.40269 * 121.83799 * 325.71487 * 9 8 7 12 12 C 1.35933 * 121.10485 * 6.47199 * 11 9 8 13 13 C 1.50629 * 119.53161 * 181.67330 * 12 11 9 14 14 C 1.53877 * 109.87897 * 186.43590 * 13 12 11 15 15 C 1.50256 * 125.13870 * 5.88432 * 5 4 3 16 16 H 1.08998 * 106.04801 * 243.19031 * 15 5 4 17 17 C 1.48845 * 113.97160 * 359.72041 * 15 5 4 18 18 H 1.08993 * 109.10924 * 271.30297 * 17 15 5 19 19 C 1.53118 * 117.71718 * 146.36784 * 17 15 5 20 20 C 1.53276 * 103.92586 * 198.64375 * 19 17 15 21 21 C 1.52815 * 111.04047 * 129.52807 * 2 1 3 22 22 O 1.42904 * 110.23729 * 208.87442 * 21 2 1 23 23 C 1.50701 * 110.23571 * 330.84400 * 21 2 1 24 24 H 1.07998 * 120.00174 * 359.80975 * 23 21 2 25 25 C 1.37877 * 120.00047 * 179.80174 * 23 21 2 26 26 N 1.31517 * 120.00215 * 188.36710 * 25 23 21 27 27 Si 1.86802 * 120.00074 * 8.36635 * 25 23 21 28 28 H 1.48503 * 109.46697 * 85.25546 * 27 25 23 29 29 H 1.48504 * 109.47208 * 205.25525 * 27 25 23 30 30 H 1.48497 * 109.47199 * 325.25698 * 27 25 23 31 31 H 1.08997 * 109.47322 * 184.31337 * 1 2 3 32 32 H 1.09004 * 109.47490 * 304.31800 * 1 2 3 33 33 H 1.09007 * 109.46934 * 64.31746 * 1 2 3 34 34 H 1.08999 * 110.04526 * 195.09246 * 3 2 1 35 35 H 1.09005 * 110.13017 * 73.63972 * 3 2 1 36 36 H 1.08999 * 108.85347 * 197.62666 * 4 3 2 37 37 H 1.09003 * 108.77280 * 79.18526 * 4 3 2 38 38 H 1.09001 * 109.68703 * 256.87019 * 7 6 5 39 39 H 1.08999 * 109.68789 * 17.40437 * 7 6 5 40 40 H 1.08998 * 109.42991 * 170.20701 * 8 7 6 41 41 H 1.09000 * 109.42880 * 290.09682 * 8 7 6 42 42 H 1.08000 * 119.44426 * 186.49870 * 11 9 8 43 43 H 1.08997 * 109.32452 * 306.12986 * 13 12 11 44 44 H 1.09002 * 109.32478 * 65.78103 * 13 12 11 45 45 H 1.09000 * 109.31080 * 195.04175 * 14 13 12 46 46 H 1.08995 * 110.34303 * 74.29431 * 14 13 12 47 47 H 1.09002 * 110.72005 * 317.57124 * 19 17 15 48 48 H 1.09003 * 110.71639 * 80.83401 * 19 17 15 49 49 H 1.09001 * 110.30038 * 264.69059 * 20 19 17 50 50 H 1.09001 * 110.11628 * 143.03616 * 20 19 17 51 51 H 0.96697 * 114.00414 * 179.97438 * 22 21 2 52 52 H 0.97001 * 120.00240 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0438 1.4333 0.0000 4 6 1.2235 2.1902 -1.0515 5 6 1.0045 1.3876 -2.2996 6 6 0.3380 1.9544 -3.3191 7 6 -0.0704 3.4058 -3.2484 8 6 0.2133 4.0537 -4.6083 9 6 -0.3774 3.2111 -5.7057 10 8 -0.8245 3.7577 -6.6941 11 6 -0.4260 1.8119 -5.6195 12 6 -0.0584 1.1651 -4.4818 13 6 -0.0884 -0.3403 -4.4408 14 6 0.2109 -0.8309 -3.0134 15 6 1.4062 -0.0483 -2.4861 16 1 2.1467 -0.0526 -3.2859 17 6 2.0724 -0.6490 -1.2983 18 1 3.1456 -0.4697 -1.3625 19 6 1.8291 -2.1350 -1.0210 20 6 2.2241 -2.3052 0.4502 21 6 2.0786 -0.9078 1.1001 22 8 3.3519 -0.4337 1.5429 23 6 1.1133 -0.9682 2.2557 24 1 0.1900 -0.4091 2.2180 25 6 1.4086 -1.7374 3.3612 26 7 0.5009 -1.9233 4.2946 27 14 3.0981 -2.5156 3.5333 28 1 4.0329 -1.5384 4.1470 29 1 3.0029 -3.7195 4.3975 30 1 3.6015 -2.9074 2.1923 31 1 -0.3634 -1.0247 0.0773 32 1 -0.3634 0.5794 0.8488 33 1 -0.3633 0.4454 -0.9262 34 1 3.1006 1.4514 -0.2666 35 1 1.8991 1.8837 0.9820 36 1 1.7472 3.1101 -1.3116 37 1 0.2545 2.4462 -0.6228 38 1 -1.1343 3.4773 -3.0224 39 1 0.5046 3.9117 -2.4729 40 1 -0.2313 5.0485 -4.6358 41 1 1.2906 4.1339 -4.7540 42 1 -0.7607 1.2388 -6.4716 43 1 -1.0772 -0.6896 -4.7379 44 1 0.6564 -0.7349 -5.1320 45 1 0.4508 -1.8938 -3.0404 46 1 -0.6510 -0.6647 -2.3671 47 1 0.7795 -2.3884 -1.1705 48 1 2.4696 -2.7544 -1.6489 49 1 3.2559 -2.6481 0.5275 50 1 1.5566 -3.0157 0.9378 51 1 3.7501 -0.9703 2.2419 52 1 0.7088 -2.4641 5.0725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039414729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:53 Heat of formation + Delta-G solvation = -51.807267 kcal Electronic energy + Delta-G solvation = -32467.160001 eV Core-core repulsion = 28589.655901 eV Total energy + Delta-G solvation = -3877.504100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.198 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.35683 -39.82641 -38.02279 -35.60855 -34.88615 -33.35416 -32.39847 -32.01580 -30.01605 -29.21378 -28.22371 -26.54478 -25.87882 -24.15907 -23.57866 -22.70043 -22.12428 -20.54001 -19.71935 -19.06207 -17.49598 -17.01336 -16.55405 -16.22324 -15.89770 -15.78574 -15.23639 -15.19306 -14.79843 -14.53182 -14.14391 -13.74426 -13.60223 -13.47965 -13.18707 -13.11724 -13.10232 -12.67407 -12.44819 -12.33128 -12.07960 -11.85212 -11.69253 -11.66052 -11.62915 -11.43125 -11.39394 -11.16188 -10.89539 -10.71528 -10.56102 -10.48064 -10.06642 -10.04129 -9.98234 -9.67352 -9.61866 -9.57037 -9.26711 -9.03600 -8.65443 -8.37535 -8.04889 -6.25792 -4.26447 0.41648 2.05998 3.09551 3.11962 3.12739 3.24658 4.19839 4.23548 4.28320 4.41938 4.65566 4.82615 4.84622 4.86920 4.93230 5.00648 5.07436 5.14042 5.22119 5.28533 5.37532 5.45240 5.46485 5.49765 5.62528 5.64800 5.67921 5.76669 5.80741 5.83374 5.86155 5.96283 5.99378 6.01807 6.05895 6.14347 6.20492 6.24292 6.28537 6.36464 6.45100 6.46321 6.56900 6.59511 6.62669 6.69796 6.79560 6.82565 6.90490 7.07000 7.12535 7.24548 7.55865 7.60221 8.31658 8.74000 8.81185 9.36503 10.86447 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.003364 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.907551 B = 8322.146956 C = 8713.065088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.027 4.027 3 C -0.092 4.092 4 C -0.092 4.092 5 C -0.011 4.011 6 C -0.181 4.181 7 C -0.070 4.070 8 C -0.164 4.164 9 C 0.392 3.608 10 O -0.487 6.487 11 C -0.281 4.281 12 C 0.054 3.946 13 C -0.100 4.100 14 C -0.116 4.116 15 C -0.042 4.042 16 H 0.068 0.932 17 C -0.088 4.088 18 H 0.070 0.930 19 C -0.107 4.107 20 C -0.155 4.155 21 C 0.228 3.772 22 O -0.575 6.575 23 C -0.533 4.533 24 H 0.091 0.909 25 C 0.077 3.923 26 N -0.887 5.887 27 Si 0.843 3.157 28 H -0.273 1.273 29 H -0.292 1.292 30 H -0.244 1.244 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.049 0.951 49 H 0.053 0.947 50 H 0.070 0.930 51 H 0.345 0.655 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.291 4.054 -14.051 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.027 4.027 3 C -0.130 4.130 4 C -0.128 4.128 5 C -0.011 4.011 6 C -0.181 4.181 7 C -0.107 4.107 8 C -0.202 4.202 9 C 0.276 3.724 10 O -0.368 6.368 11 C -0.300 4.300 12 C 0.053 3.947 13 C -0.136 4.136 14 C -0.153 4.153 15 C -0.060 4.060 16 H 0.086 0.914 17 C -0.107 4.107 18 H 0.089 0.911 19 C -0.144 4.144 20 C -0.193 4.193 21 C 0.189 3.811 22 O -0.385 6.385 23 C -0.571 4.571 24 H 0.109 0.891 25 C -0.126 4.126 26 N -0.524 5.524 27 Si 0.672 3.328 28 H -0.200 1.200 29 H -0.219 1.219 30 H -0.169 1.169 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.195 0.805 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.886 4.707 -14.846 15.599 hybrid contribution 1.094 -1.093 0.791 1.737 sum 1.980 3.614 -14.055 14.646 Atomic orbital electron populations 1.21952 0.94136 1.02299 0.99761 1.20737 0.95247 0.93885 0.92850 1.21302 0.98547 0.95185 0.97960 1.20725 1.01712 0.97678 0.92698 1.22498 0.91287 0.94586 0.92710 1.20323 1.06398 0.95675 0.95686 1.20583 1.02091 0.91608 0.96446 1.22013 1.03112 1.00098 0.94929 1.20730 0.75167 0.90062 0.86478 1.90570 1.38360 1.75966 1.31932 1.22193 1.11887 0.95917 1.00014 1.21539 0.86134 0.95159 0.91865 1.21073 1.03201 0.90573 0.98797 1.21860 0.98581 1.00280 0.94542 1.19024 0.97297 0.91184 0.98535 0.91409 1.21157 0.99497 0.96001 0.94027 0.91139 1.21780 1.00825 0.94649 0.97188 1.23359 1.00198 1.00936 0.94833 1.19607 0.81247 0.88028 0.92242 1.86467 1.37071 1.57525 1.57424 1.21677 1.06308 1.28986 1.00120 0.89149 1.25004 0.96255 0.95332 0.96007 1.69900 1.33101 1.38932 1.10511 0.87740 0.86086 0.79473 0.79514 1.19974 1.21907 1.16901 0.92189 0.92193 0.93615 0.91826 0.90830 0.90900 0.89791 0.90610 0.89487 0.89129 0.88526 0.85400 0.89420 0.89327 0.90017 0.90193 0.91381 0.93198 0.92802 0.91085 0.80498 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 5.24 37.16 0.19 -1.90 16 2 C -0.03 -0.47 0.52 -153.95 -0.08 -0.55 16 3 C -0.09 -1.46 4.72 -26.93 -0.13 -1.59 16 4 C -0.09 -1.13 3.72 -28.04 -0.10 -1.23 16 5 C -0.01 -0.13 4.00 -101.28 -0.40 -0.53 16 6 C -0.18 -1.99 5.47 -102.76 -0.56 -2.55 16 7 C -0.07 -0.68 5.73 -27.62 -0.16 -0.84 16 8 C -0.16 -1.65 6.07 -27.87 -0.17 -1.82 16 9 C 0.39 5.00 6.72 -33.67 -0.23 4.77 16 10 O -0.49 -7.82 17.78 5.39 0.10 -7.73 16 11 C -0.28 -3.24 9.45 -39.65 -0.37 -3.62 16 12 C 0.05 0.58 5.81 -102.37 -0.59 -0.02 16 13 C -0.10 -0.91 5.77 -27.46 -0.16 -1.07 16 14 C -0.12 -1.22 4.48 -26.63 -0.12 -1.34 16 15 C -0.04 -0.51 1.65 -94.38 -0.16 -0.67 16 16 H 0.07 0.79 7.83 -51.93 -0.41 0.38 16 17 C -0.09 -1.30 2.04 -91.56 -0.19 -1.49 16 18 H 0.07 1.11 7.80 -51.93 -0.40 0.70 16 19 C -0.11 -1.64 5.00 -26.53 -0.13 -1.78 16 20 C -0.16 -3.01 4.41 -25.64 -0.11 -3.12 16 21 C 0.23 4.79 0.66 -90.92 -0.06 4.73 16 22 O -0.57 -12.68 12.01 -35.23 -0.42 -13.10 16 23 C -0.53 -13.41 7.93 -34.44 -0.27 -13.68 16 24 H 0.09 2.44 5.71 -52.49 -0.30 2.14 16 25 C 0.08 2.04 5.27 -17.82 -0.09 1.94 16 26 N -0.89 -25.24 13.96 55.43 0.77 -24.47 16 27 Si 0.84 19.07 23.71 -169.99 -4.03 15.04 16 28 H -0.27 -6.12 7.07 56.52 0.40 -5.72 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H -0.24 -5.08 4.38 56.52 0.25 -4.83 16 31 H 0.06 1.09 6.99 -51.93 -0.36 0.72 16 32 H 0.06 1.11 6.79 -51.93 -0.35 0.76 16 33 H 0.05 0.65 3.48 -51.93 -0.18 0.47 16 34 H 0.06 1.02 7.71 -51.93 -0.40 0.62 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 0.77 7.01 -51.93 -0.36 0.41 16 37 H 0.08 1.02 7.42 -51.93 -0.39 0.63 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.75 5.97 -51.93 -0.31 0.44 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.81 6.58 -51.93 -0.34 0.47 16 46 H 0.08 0.92 6.18 -51.93 -0.32 0.60 16 47 H 0.07 0.99 6.00 -51.93 -0.31 0.68 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.05 1.05 6.30 -51.93 -0.33 0.72 16 50 H 0.07 1.48 7.19 -51.93 -0.37 1.11 16 51 H 0.34 7.56 3.76 45.56 0.17 7.73 16 52 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -29.17 356.73 -9.75 -38.92 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.64 Total: 12.30 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -3.90 Total: -26.33 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.77 Total: -24.47 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.33 Total: -20.83 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.03 Total: 15.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.17 -9.75 -38.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039414729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.889 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds