Wall clock time and date at job start Tue Mar 31 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47359 * 2 1 4 4 N 1.46499 * 109.47293 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99615 * 273.69259 * 4 3 2 6 6 H 1.08001 * 120.00058 * 8.67926 * 5 4 3 7 7 C 1.38813 * 119.99931 * 188.67081 * 5 4 3 8 8 N 1.31625 * 119.99817 * 26.60053 * 7 5 4 9 9 Si 1.86797 * 120.00070 * 206.59628 * 7 5 4 10 10 H 1.48494 * 109.47144 * 90.00378 * 9 7 5 11 11 H 1.48506 * 109.46918 * 210.00091 * 9 7 5 12 12 H 1.48502 * 109.47212 * 330.00027 * 9 7 5 13 13 C 1.46494 * 120.00175 * 93.69615 * 4 3 2 14 14 C 1.50699 * 109.47538 * 90.00146 * 13 4 3 15 15 O 1.21296 * 119.99778 * 359.97438 * 14 13 4 16 16 N 1.34770 * 120.00584 * 180.02562 * 14 13 4 17 17 C 1.40095 * 120.00301 * 185.16660 * 16 14 13 18 18 C 1.38843 * 120.00366 * 32.95707 * 17 16 14 19 19 C 1.38171 * 120.06868 * 180.02562 * 18 17 16 20 20 C 1.38549 * 120.11775 * 0.25215 * 19 18 17 21 21 C 1.39280 * 119.94505 * 359.45652 * 20 19 18 22 22 C 1.38484 * 119.89518 * 0.56629 * 21 20 19 23 23 O 1.36515 * 108.64516 * 180.32980 * 21 20 19 24 24 C 1.44334 * 105.37802 * 342.32072 * 23 21 20 25 25 F 1.39891 * 111.02980 * 268.95620 * 24 23 21 26 26 F 1.39898 * 110.41216 * 146.02968 * 24 23 21 27 27 O 1.36604 * 131.44159 * 179.72842 * 20 19 18 28 28 H 1.09004 * 109.46828 * 300.00072 * 1 2 3 29 29 H 1.08995 * 109.46960 * 60.00170 * 1 2 3 30 30 H 1.08998 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47390 * 239.99693 * 2 1 3 32 32 H 1.09003 * 109.47272 * 119.99912 * 2 1 3 33 33 H 1.09005 * 109.47243 * 59.99610 * 3 2 1 34 34 H 1.09003 * 109.46857 * 300.00166 * 3 2 1 35 35 H 0.96998 * 119.99813 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47232 * 329.99258 * 13 4 3 37 37 H 1.09008 * 109.46932 * 209.99839 * 13 4 3 38 38 H 0.97007 * 119.99856 * 5.16071 * 16 14 13 39 39 H 1.08000 * 119.96415 * 0.02600 * 18 17 16 40 40 H 1.08003 * 119.93793 * 179.97438 * 19 18 17 41 41 H 1.08004 * 120.01606 * 179.68512 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.3659 1.1826 6 1 3.6598 1.1650 2.1017 7 6 5.5664 1.5463 1.2007 8 7 6.1469 2.2751 0.2709 9 14 6.5946 0.7548 2.5444 10 1 7.0272 -0.5963 2.1057 11 1 7.7898 1.5944 2.8125 12 1 5.7843 0.6372 3.7833 13 6 4.2370 1.5244 -1.2669 14 6 4.4882 2.9703 -1.6094 15 8 4.0940 3.8463 -0.8687 16 7 5.1498 3.2903 -2.7391 17 6 5.4783 4.6261 -3.0041 18 6 5.7756 5.4887 -1.9576 19 6 6.0993 6.8066 -2.2173 20 6 6.1231 7.2725 -3.5219 21 6 5.8313 6.4081 -4.5743 22 6 5.5065 5.0875 -4.3129 23 8 5.9288 7.0998 -5.7472 24 6 5.8727 8.4933 -5.3755 25 9 4.5553 8.9639 -5.3891 26 9 6.6753 9.2585 -6.2284 27 8 6.4011 8.5072 -4.0361 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 7.1085 2.4015 0.2838 36 1 3.6477 1.0606 -2.0579 37 1 5.1895 1.0032 -1.1704 38 1 5.3986 2.5955 -3.3688 39 1 5.7539 5.1292 -0.9394 40 1 6.3298 7.4759 -1.4016 41 1 5.2749 4.4167 -5.1272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040158282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:47 Heat of formation + Delta-G solvation = -141.573810 kcal Electronic energy + Delta-G solvation = -30009.128714 eV Core-core repulsion = 25334.129076 eV Total energy + Delta-G solvation = -4674.999637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -49.55663 -48.01615 -42.13830 -39.48307 -37.33739 -36.92882 -35.79481 -33.64870 -33.04634 -30.73562 -30.49130 -29.04370 -26.95743 -25.65269 -25.17413 -23.43903 -23.01098 -22.15697 -20.64769 -19.91641 -19.29577 -18.89737 -18.60859 -17.51079 -17.17248 -16.36284 -16.09262 -15.45866 -15.11855 -14.91586 -14.83161 -14.73882 -14.41921 -14.27286 -14.09204 -13.99512 -13.88875 -13.86207 -13.38583 -13.20362 -13.16287 -12.92639 -12.74711 -12.48874 -11.89266 -11.60482 -11.49550 -11.26178 -11.10716 -10.81927 -10.75751 -10.50624 -10.26141 -9.92731 -9.90551 -9.61048 -9.02726 -8.76553 -8.44905 -7.61579 -7.08431 -5.98196 -3.20642 1.10350 1.20282 1.63838 2.21519 3.32696 3.41868 3.42083 3.52312 3.65112 3.88101 3.95832 4.11429 4.31241 4.43732 4.77832 5.01169 5.15573 5.28361 5.30521 5.42329 5.55862 5.61497 5.66658 5.89976 5.92364 5.96617 6.09901 6.13136 6.26715 6.34965 6.46285 6.48720 6.55693 6.64052 6.76777 6.82002 6.89076 7.05892 7.30419 7.68109 8.05338 8.21435 9.01144 9.31696 9.69488 10.11882 11.13435 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.002851 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.800621 B = 9817.163223 C =11025.120376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.151 3.849 4 N -0.572 5.572 5 C -0.243 4.243 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.902 5.902 9 Si 0.901 3.099 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.166 3.834 14 C 0.525 3.475 15 O -0.503 6.503 16 N -0.685 5.685 17 C 0.202 3.798 18 C -0.098 4.098 19 C -0.060 4.060 20 C -0.017 4.017 21 C 0.040 3.960 22 C -0.132 4.132 23 O -0.291 6.291 24 C 0.568 3.432 25 F -0.158 7.158 26 F -0.124 7.124 27 O -0.290 6.290 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.255 0.745 36 H 0.043 0.957 37 H 0.107 0.893 38 H 0.403 0.597 39 H 0.170 0.830 40 H 0.141 0.859 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 3.825 -10.738 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.024 3.976 4 N -0.291 5.291 5 C -0.372 4.372 6 H 0.097 0.903 7 C -0.197 4.197 8 N -0.548 5.548 9 Si 0.732 3.268 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.035 3.965 14 C 0.313 3.687 15 O -0.374 6.374 16 N -0.331 5.331 17 C 0.104 3.896 18 C -0.119 4.119 19 C -0.080 4.080 20 C -0.061 4.061 21 C -0.004 4.004 22 C -0.154 4.154 23 O -0.210 6.210 24 C 0.459 3.541 25 F -0.140 7.140 26 F -0.105 7.105 27 O -0.210 6.210 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.124 0.876 38 H 0.237 0.763 39 H 0.188 0.812 40 H 0.159 0.841 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.887 4.547 -10.217 11.341 hybrid contribution 0.931 -0.076 -0.026 0.935 sum -0.956 4.470 -10.243 11.217 Atomic orbital electron populations 1.21727 0.97176 1.00529 1.01148 1.22091 0.93818 1.00440 1.01774 1.20820 0.84041 0.93310 0.99422 1.43971 0.99895 1.82992 1.02207 1.19281 0.89685 1.41285 0.86956 0.90287 1.24626 0.97232 0.99290 0.98508 1.69838 1.09884 1.37864 1.37246 0.86273 0.79863 0.79254 0.81434 1.21615 1.22047 1.20670 1.20713 0.98583 0.89958 0.87270 1.22791 0.74140 0.94551 0.77199 1.90535 1.49721 1.50315 1.46825 1.44337 1.58816 1.04518 1.25414 1.17502 0.94010 0.87026 0.91100 1.21427 0.97378 0.91149 1.01926 1.20056 1.00067 0.96185 0.91654 1.19461 1.09179 0.82324 0.95123 1.19061 1.05335 0.94429 0.81543 1.19649 1.06969 0.91938 0.96820 1.87634 1.89215 1.15590 1.28601 1.21970 0.74768 0.78968 0.78418 1.93253 1.36356 1.88487 1.95857 1.93213 1.73194 1.74633 1.69451 1.87591 1.74421 1.33078 1.25863 0.93170 0.93393 0.93637 0.92943 0.92005 0.93545 0.94485 0.93476 0.93920 0.87566 0.76267 0.81230 0.84130 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.14 -2.27 6.24 -26.73 -0.17 -2.44 16 3 C 0.15 2.89 5.67 -4.04 -0.02 2.87 16 4 N -0.57 -12.80 2.02 -174.61 -0.35 -13.15 16 5 C -0.24 -6.10 9.69 -15.06 -0.15 -6.25 16 6 H 0.08 2.00 7.96 -52.49 -0.42 1.58 16 7 C 0.00 0.01 4.85 -17.43 -0.08 -0.07 16 8 N -0.90 -22.73 9.04 55.49 0.50 -22.23 16 9 Si 0.90 20.40 29.63 -169.99 -5.04 15.36 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.17 3.34 5.42 -5.20 -0.03 3.31 16 14 C 0.53 10.69 5.63 -10.99 -0.06 10.63 16 15 O -0.50 -12.20 13.77 5.54 0.08 -12.12 16 16 N -0.68 -11.07 5.35 -9.84 -0.05 -11.12 16 17 C 0.20 3.26 6.29 -83.65 -0.53 2.74 16 18 C -0.10 -1.72 8.65 -39.38 -0.34 -2.06 16 19 C -0.06 -0.93 10.05 -39.49 -0.40 -1.32 16 20 C -0.02 -0.26 7.15 -39.08 -0.28 -0.54 16 21 C 0.04 0.61 7.14 -39.10 -0.28 0.33 16 22 C -0.13 -1.85 9.97 -39.28 -0.39 -2.25 16 23 O -0.29 -4.25 11.37 -45.74 -0.52 -4.77 16 24 C 0.57 7.94 3.70 101.05 0.37 8.31 16 25 F -0.16 -2.18 17.58 2.25 0.04 -2.14 16 26 F -0.12 -1.58 17.56 2.25 0.04 -1.54 16 27 O -0.29 -4.38 11.35 -46.03 -0.52 -4.90 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.04 0.68 8.04 -51.93 -0.42 0.27 16 35 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 36 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.11 2.29 6.37 -51.92 -0.33 1.96 16 38 H 0.40 5.07 8.82 -40.82 -0.36 4.71 16 39 H 0.17 3.53 6.38 -52.49 -0.33 3.20 16 40 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -28.15 358.18 -7.21 -35.36 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.79 Total: 4.17 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -1.98 Total: 11.69 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.10 Total: -46.51 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.97 Total: -21.79 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.08 Total: -3.67 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.04 Total: 15.36 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.15 -7.21 -35.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040158282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.217 kcal (2) G-P(sol) polarization free energy of solvation -28.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds