Wall clock time and date at job start Tue Mar 31 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30183 * 126.80360 * 2 1 4 4 O 1.20919 * 111.60731 * 179.97438 * 3 2 1 5 5 C 1.34042 * 111.56654 * 359.76015 * 4 3 2 6 6 C 1.50702 * 126.77777 * 180.29211 * 5 4 3 7 7 C 1.35453 * 106.44774 * 0.38027 * 5 4 3 8 8 S 1.76194 * 128.00959 * 179.91146 * 7 5 4 9 9 O 1.42096 * 106.40278 * 156.13947 * 8 7 5 10 10 O 1.42106 * 106.40331 * 23.21992 * 8 7 5 11 11 N 1.65602 * 107.21766 * 269.68086 * 8 7 5 12 12 C 1.43614 * 120.56048 * 90.00257 * 11 8 7 13 13 C 1.54937 * 116.03910 * 269.68185 * 12 11 8 14 14 C 1.54756 * 109.76562 * 318.49912 * 13 12 11 15 15 N 1.44054 * 110.37519 * 321.91197 * 14 13 12 16 16 C 1.46901 * 111.00092 * 220.51138 * 15 14 13 17 17 C 1.50698 * 109.46853 * 52.29133 * 16 15 14 18 18 H 1.07993 * 120.00607 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99517 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99787 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00229 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47255 * 89.99895 * 21 19 17 23 23 H 1.48503 * 109.47247 * 210.00051 * 21 19 17 24 24 H 1.48499 * 109.46849 * 330.00151 * 21 19 17 25 25 C 1.46183 * 106.07139 * 99.83889 * 15 14 13 26 26 C 1.46806 * 114.39346 * 267.65173 * 25 15 14 27 27 H 1.08998 * 109.47379 * 270.02571 * 1 2 3 28 28 H 1.08999 * 109.46705 * 30.03066 * 1 2 3 29 29 H 1.08997 * 109.47045 * 150.02716 * 1 2 3 30 30 H 1.08998 * 109.46681 * 270.10903 * 6 5 4 31 31 H 1.08999 * 109.47046 * 30.10901 * 6 5 4 32 32 H 1.09003 * 109.47048 * 150.11105 * 6 5 4 33 33 H 1.09002 * 108.13827 * 31.32300 * 12 11 8 34 34 H 1.09002 * 108.13320 * 148.04271 * 12 11 8 35 35 H 1.08993 * 109.43358 * 78.75638 * 13 12 11 36 36 H 1.09000 * 109.43440 * 198.62126 * 13 12 11 37 37 H 1.08998 * 109.41903 * 201.55079 * 14 13 12 38 38 H 1.08998 * 109.02562 * 82.02023 * 14 13 12 39 39 H 1.08994 * 109.47227 * 172.29188 * 16 15 14 40 40 H 1.09002 * 109.46848 * 292.29420 * 16 15 14 41 41 H 0.97002 * 119.99643 * 179.97438 * 20 19 17 42 42 H 1.08997 * 108.49880 * 146.37512 * 25 15 14 43 43 H 1.09007 * 108.49720 * 28.92202 * 25 15 14 44 44 H 1.09005 * 109.96971 * 298.66810 * 26 25 15 45 45 H 1.09006 * 109.96945 * 177.36097 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7254 0.0005 5 6 3.6025 -0.6067 0.0061 6 6 4.9022 -1.3695 0.0146 7 6 2.3540 -1.1320 0.0007 8 16 1.8923 -2.8324 0.0019 9 8 0.5812 -2.8918 0.5466 10 8 2.9933 -3.5468 0.5467 11 7 1.7637 -3.3066 -1.5795 12 6 2.9004 -3.8397 -2.2768 13 6 3.7828 -2.8102 -3.0263 14 6 2.8842 -1.7719 -3.7400 15 7 1.7118 -2.4108 -4.2808 16 6 1.3864 -1.8757 -5.6097 17 6 2.6065 -1.9447 -6.4915 18 1 3.5313 -2.3454 -6.1035 19 6 2.5424 -1.4951 -7.7933 20 7 3.6073 -1.5548 -8.5628 21 14 0.9430 -0.8013 -8.4642 22 1 0.8968 0.6626 -8.2186 23 1 0.8646 -1.0609 -9.9243 24 1 -0.2039 -1.4539 -7.7831 25 6 0.6325 -2.1467 -3.3310 26 6 0.4564 -3.1859 -2.3090 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 5.2209 -1.5555 -1.0110 31 1 5.6633 -0.7847 0.5312 32 1 4.7624 -2.3199 0.5297 33 1 3.5276 -4.3617 -1.5541 34 1 2.5416 -4.5705 -3.0016 35 1 4.4321 -2.3020 -2.3135 36 1 4.3930 -3.3268 -3.7672 37 1 3.4446 -1.3022 -4.5483 38 1 2.5811 -1.0106 -3.0212 39 1 0.5842 -2.4659 -6.0525 40 1 1.0647 -0.8386 -5.5149 41 1 3.5621 -1.2389 -9.4788 42 1 -0.3000 -2.0462 -3.8863 43 1 0.8363 -1.2002 -2.8302 44 1 0.2054 -4.1351 -2.7827 45 1 -0.3320 -2.8954 -1.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040475906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:19 Heat of formation + Delta-G solvation = 13.269031 kcal Electronic energy + Delta-G solvation = -30657.754100 eV Core-core repulsion = 26613.716522 eV Total energy + Delta-G solvation = -4044.037578 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.20506 -39.01623 -37.48532 -36.00194 -35.23255 -35.13285 -33.81338 -32.57551 -32.27847 -29.12807 -28.91050 -28.14513 -26.29374 -25.47243 -24.06614 -22.05690 -21.62545 -20.72222 -19.71105 -18.99739 -18.14098 -17.97845 -17.34904 -16.82060 -16.42827 -16.15020 -15.27336 -14.84678 -14.67033 -14.46876 -14.28054 -14.06340 -13.74774 -13.62368 -13.40900 -13.17802 -13.03449 -12.86916 -12.67765 -12.62902 -12.30421 -12.21439 -12.13110 -12.12106 -11.65469 -11.57736 -11.36157 -11.23799 -11.11968 -10.80940 -10.69854 -10.54788 -10.21728 -10.04774 -9.80257 -9.70818 -9.27702 -8.99201 -8.70496 -7.67647 -6.17129 -4.15526 0.27082 0.91152 1.70317 2.71876 2.92760 3.20258 3.28901 3.29801 3.60218 3.74513 4.05279 4.20411 4.31843 4.54204 4.65896 4.84312 4.89863 5.04840 5.14911 5.16479 5.27198 5.30935 5.35365 5.38054 5.43386 5.52518 5.55316 5.67925 5.72182 5.74574 5.87587 5.93496 6.02294 6.11441 6.25288 6.41943 6.43147 6.59392 6.76473 6.82516 6.92398 7.43735 7.81614 7.92985 7.96006 8.49648 8.88291 9.44024 10.95176 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.004123 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.096096 B = 6790.164393 C = 6924.578744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.108 3.892 3 N -0.365 5.365 4 O 0.097 5.903 5 C 0.116 3.884 6 C -0.121 4.121 7 C -0.795 4.795 8 S 2.722 3.278 9 O -0.953 6.953 10 O -0.955 6.955 11 N -0.979 5.979 12 C 0.124 3.876 13 C -0.135 4.135 14 C 0.045 3.955 15 N -0.497 5.497 16 C 0.157 3.843 17 C -0.519 4.519 18 H 0.085 0.915 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.017 3.983 26 C 0.130 3.870 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.020 0.980 39 H 0.033 0.967 40 H -0.017 1.017 41 H 0.265 0.735 42 H 0.069 0.931 43 H 0.034 0.966 44 H 0.092 0.908 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 -1.302 17.903 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 N -0.073 5.073 4 O 0.040 5.960 5 C 0.050 3.950 6 C -0.178 4.178 7 C -0.882 4.882 8 S 2.807 3.193 9 O -0.943 6.943 10 O -0.945 6.945 11 N -0.818 5.818 12 C -0.003 4.003 13 C -0.175 4.175 14 C -0.084 4.084 15 N -0.219 5.219 16 C 0.031 3.969 17 C -0.557 4.557 18 H 0.102 0.898 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.703 3.297 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.113 4.113 26 C 0.007 3.993 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.001 0.999 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.111 0.889 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.606 -0.928 18.363 18.570 hybrid contribution -0.783 1.465 -0.921 1.899 sum -3.388 0.536 17.442 17.776 Atomic orbital electron populations 1.20444 0.85024 1.04609 1.04588 1.23061 0.98711 0.86117 0.97521 1.73824 0.88878 1.23566 1.21068 1.84853 1.22245 1.22566 1.66383 1.24527 0.97068 0.83840 0.89612 1.21239 0.89574 1.00569 1.06375 1.33074 1.00009 1.27066 1.28024 1.01192 0.73407 0.71961 0.72727 1.93550 1.37870 1.86346 1.76574 1.93515 1.54696 1.69599 1.76739 1.57560 1.17126 1.76862 1.30213 1.20860 0.86388 0.96254 0.96777 1.22839 0.97593 0.98139 0.98963 1.22246 0.93803 0.94008 0.98335 1.62040 1.01826 1.55973 1.02092 1.20352 0.98279 0.92370 0.85893 1.21037 0.96988 1.41828 0.95801 0.89759 1.24891 0.96113 0.95309 0.96772 1.69885 1.28615 1.47077 1.07859 0.86865 0.84703 0.79654 0.78500 1.20436 1.21092 1.19097 1.21557 0.97485 0.96920 0.95380 1.21234 0.82795 1.01527 0.93768 0.88961 0.89786 0.89111 0.87069 0.88419 0.85622 0.90881 0.88936 0.93117 0.89783 0.88773 0.96145 0.94919 0.99885 0.92535 0.91255 0.94784 0.88940 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.78 36.00 0.35 -0.63 16 2 C 0.11 1.47 7.32 -82.10 -0.60 0.87 16 3 N -0.36 -5.38 12.07 33.43 0.40 -4.97 16 4 O 0.10 1.33 11.20 17.17 0.19 1.52 16 5 C 0.12 1.41 7.48 -35.30 -0.26 1.14 16 6 C -0.12 -1.06 9.96 36.01 0.36 -0.70 16 7 C -0.79 -10.40 6.37 -39.38 -0.25 -10.65 16 8 S 2.72 35.30 5.85 -107.50 -0.63 34.67 16 9 O -0.95 -13.52 15.05 -57.17 -0.86 -14.38 16 10 O -0.96 -13.13 14.22 -57.17 -0.81 -13.95 16 11 N -0.98 -12.36 2.92 -115.66 -0.34 -12.70 16 12 C 0.12 1.58 5.28 -4.55 -0.02 1.56 16 13 C -0.14 -1.91 6.63 -24.78 -0.16 -2.08 16 14 C 0.05 0.80 4.91 -4.42 -0.02 0.78 16 15 N -0.50 -9.12 4.24 -241.62 -1.02 -10.14 16 16 C 0.16 3.51 3.69 -4.98 -0.02 3.49 16 17 C -0.52 -13.65 8.46 -34.44 -0.29 -13.95 16 18 H 0.08 2.38 6.95 -52.49 -0.36 2.01 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -26.23 13.96 55.43 0.77 -25.46 16 21 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 25 C 0.02 0.25 4.93 -7.18 -0.04 0.21 16 26 C 0.13 1.59 6.37 -4.94 -0.03 1.56 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.94 6.83 -51.93 -0.35 0.58 16 30 H 0.11 0.89 5.66 -51.93 -0.29 0.59 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.13 1.13 5.91 -51.93 -0.31 0.83 16 33 H 0.07 0.83 6.94 -51.93 -0.36 0.47 16 34 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 35 H 0.05 0.60 5.33 -51.93 -0.28 0.32 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.98 5.67 -51.93 -0.29 1.69 16 38 H 0.02 0.35 6.61 -51.93 -0.34 0.01 16 39 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 40 H -0.02 -0.38 7.50 -51.93 -0.39 -0.77 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.07 0.99 7.66 -51.93 -0.40 0.59 16 43 H 0.03 0.51 6.70 -51.93 -0.35 0.16 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.09 0.98 6.59 -51.93 -0.34 0.64 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -32.07 356.90 -8.81 -40.88 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.14 Total: -0.32 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.09 Total: -16.53 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.18 Total: -53.27 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.48 Total: -26.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Atomic # 16 Polarization: 35.30 SS G_CDS: -0.63 Total: 34.67 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.07 -8.81 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040475906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.149 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds