Wall clock time and date at job start Tue Mar 31 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00067 * 2 1 4 4 C 1.52997 * 109.47406 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47323 * 64.99852 * 4 3 2 6 6 C 1.46493 * 120.00078 * 84.99921 * 5 4 3 7 7 C 1.50700 * 109.47183 * 80.10643 * 6 5 4 8 8 C 1.38234 * 119.99802 * 96.11517 * 7 6 5 9 9 C 1.38243 * 120.00048 * 179.97438 * 8 7 6 10 10 C 1.38230 * 119.99797 * 359.97438 * 9 8 7 11 11 C 1.38240 * 120.00198 * 0.28009 * 10 9 8 12 12 C 1.38234 * 120.00267 * 276.09658 * 7 6 5 13 13 S 1.65597 * 120.00141 * 265.00528 * 5 4 3 14 14 O 1.42104 * 106.40473 * 29.57612 * 13 5 4 15 15 O 1.42100 * 106.40560 * 162.49786 * 13 5 4 16 16 N 1.65598 * 107.21766 * 276.03849 * 13 5 4 17 17 C 1.46502 * 120.00016 * 264.16891 * 16 13 5 18 18 C 1.46503 * 120.00364 * 84.16463 * 16 13 5 19 19 C 1.50704 * 109.46999 * 95.00005 * 18 16 13 20 20 H 1.07996 * 119.99963 * 0.02562 * 19 18 16 21 21 C 1.37876 * 119.99994 * 180.02562 * 19 18 16 22 22 N 1.31507 * 120.00079 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99776 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47096 * 90.00106 * 23 21 19 25 25 H 1.48507 * 109.46771 * 209.99711 * 23 21 19 26 26 H 1.48496 * 109.46936 * 329.99712 * 23 21 19 27 27 H 1.09002 * 109.46983 * 299.99885 * 1 2 3 28 28 H 1.08994 * 109.47159 * 60.00044 * 1 2 3 29 29 H 1.09004 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46912 * 59.99713 * 3 2 1 31 31 H 1.08997 * 109.46910 * 300.00515 * 3 2 1 32 32 H 1.09005 * 109.46954 * 305.00138 * 4 3 2 33 33 H 1.09000 * 109.47364 * 185.00296 * 4 3 2 34 34 H 1.09005 * 109.47325 * 320.11469 * 6 5 4 35 35 H 1.08998 * 109.47431 * 200.10909 * 6 5 4 36 36 H 1.08000 * 119.99924 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.99942 * 180.02562 * 9 8 7 38 38 H 1.07999 * 119.99758 * 180.02562 * 10 9 8 39 39 H 1.08001 * 119.99651 * 179.72825 * 11 10 9 40 40 H 1.07991 * 120.00051 * 359.97438 * 12 7 6 41 41 H 1.08995 * 109.47032 * 87.04740 * 17 16 13 42 42 H 1.09003 * 109.47353 * 207.04537 * 17 16 13 43 43 H 1.08997 * 109.47208 * 327.04240 * 17 16 13 44 44 H 1.08994 * 109.47300 * 215.00527 * 18 16 13 45 45 H 1.09006 * 109.47027 * 335.00452 * 18 16 13 46 46 H 0.97006 * 120.00384 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1809 1.3890 -2.4460 7 6 5.5211 2.0726 -2.3600 8 6 6.6218 1.5171 -2.9850 9 6 7.8511 2.1445 -2.9066 10 6 7.9796 3.3276 -2.2035 11 6 6.8800 3.8805 -1.5740 12 6 5.6497 3.2555 -1.6563 13 16 4.2414 -1.0687 -1.3191 14 8 3.3625 -1.6572 -0.3701 15 8 4.2455 -1.4190 -2.6962 16 7 5.7779 -1.3384 -0.7634 17 6 6.8880 -1.4640 -1.7110 18 6 6.0271 -1.4513 0.6759 19 6 6.0138 -2.9043 1.0755 20 1 5.8378 -3.6673 0.3317 21 6 6.2264 -3.2596 2.3907 22 7 6.2143 -4.5275 2.7395 23 14 6.5301 -1.9397 3.6772 24 1 5.2342 -1.5109 4.2620 25 1 7.4008 -2.4849 4.7496 26 1 7.1968 -0.7743 3.0429 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8515 0.5682 0.8410 33 1 3.9785 2.1765 0.0890 34 1 3.3933 2.1400 -2.5086 35 1 4.1517 0.7571 -3.3337 36 1 6.5213 0.5928 -3.5347 37 1 8.7110 1.7106 -3.3953 38 1 8.9399 3.8180 -2.1425 39 1 6.9814 4.8026 -1.0210 40 1 4.7897 3.6899 -1.1686 41 1 7.2887 -0.4753 -1.9343 42 1 7.6712 -2.0830 -1.2732 43 1 6.5303 -1.9272 -2.6305 44 1 6.9993 -1.0185 0.9113 45 1 5.2497 -0.9171 1.2223 46 1 6.3635 -4.7775 3.6648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040501544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:28 Heat of formation + Delta-G solvation = -76.922289 kcal Electronic energy + Delta-G solvation = -30063.719421 eV Core-core repulsion = 26081.196765 eV Total energy + Delta-G solvation = -3982.522656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.45345 -37.92329 -36.53772 -35.88112 -35.52465 -34.95989 -32.32678 -31.85788 -30.97253 -29.28075 -28.30969 -26.33849 -25.51611 -25.05976 -22.81933 -22.29589 -21.83107 -21.14343 -18.49188 -17.32545 -17.05078 -16.78724 -16.58271 -16.49436 -15.83191 -15.49662 -15.26606 -14.98452 -14.77482 -14.66876 -14.11029 -13.62969 -13.52449 -13.40292 -13.19909 -12.71101 -12.58643 -12.45258 -12.33805 -12.23255 -12.12295 -11.81637 -11.56558 -11.39633 -11.37409 -11.25109 -11.14582 -11.06779 -10.85026 -10.77149 -10.55394 -10.35290 -10.18819 -9.50295 -9.47549 -8.99774 -8.94362 -8.79563 -8.54238 -7.98348 -6.03079 -4.01314 1.11097 1.35831 1.41682 3.29270 3.34398 3.35433 3.43684 3.80517 3.98335 4.15741 4.42107 4.71496 4.72428 4.92416 4.96372 5.04422 5.06305 5.15250 5.24358 5.27193 5.32177 5.40915 5.44364 5.44668 5.50856 5.60298 5.63282 5.66277 5.81198 5.86977 5.93126 5.98235 6.01966 6.15766 6.28702 6.39696 6.45659 6.48480 6.57458 6.70995 6.81185 6.94973 7.16442 7.38245 7.49593 7.63973 8.55172 9.03163 9.56300 11.10749 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.008824 B = 0.005795 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.342164 B = 4830.584993 C = 6244.164100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.038 3.962 4 C 0.125 3.875 5 N -1.000 6.000 6 C 0.154 3.846 7 C -0.103 4.103 8 C -0.106 4.106 9 C -0.118 4.118 10 C -0.120 4.120 11 C -0.123 4.123 12 C -0.105 4.105 13 S 2.774 3.226 14 O -0.930 6.930 15 O -0.998 6.998 16 N -0.990 5.990 17 C 0.092 3.908 18 C 0.231 3.769 19 C -0.526 4.526 20 H 0.078 0.922 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.869 3.131 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.265 1.265 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.023 0.977 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 19.630 -9.534 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C -0.040 4.040 4 C -0.001 4.001 5 N -0.835 5.835 6 C 0.029 3.971 7 C -0.105 4.105 8 C -0.125 4.125 9 C -0.136 4.136 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.124 4.124 13 S 2.783 3.217 14 O -0.913 6.913 15 O -0.982 6.982 16 N -0.831 5.831 17 C -0.054 4.054 18 C 0.108 3.892 19 C -0.565 4.565 20 H 0.096 0.904 21 C -0.129 4.129 22 N -0.534 5.534 23 Si 0.696 3.304 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.041 0.959 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.281 18.664 -9.660 21.271 hybrid contribution 0.338 1.173 1.070 1.623 sum -2.943 19.837 -8.590 21.817 Atomic orbital electron populations 1.22728 0.82107 1.02817 0.98987 1.88299 1.18566 1.25619 1.95077 1.23006 0.94779 0.86319 0.99939 1.21314 0.92188 1.00253 0.86375 1.58383 1.81630 1.27637 1.15896 1.20216 0.93147 0.95273 0.88498 1.20356 0.96356 0.95584 0.98242 1.21229 0.92487 0.99550 0.99189 1.21149 0.97410 0.95637 0.99362 1.21141 0.98538 0.96245 0.97871 1.21107 0.93034 1.00077 0.99916 1.20995 0.97554 0.95271 0.98596 1.02374 0.73496 0.72738 0.73121 1.93708 1.62325 1.72965 1.62285 1.93487 1.87589 1.82179 1.34963 1.57495 1.24738 1.85860 1.15043 1.21480 0.90923 1.00568 0.92478 1.19380 0.96466 0.98241 0.75128 1.21380 1.48967 0.91075 0.95091 0.90440 1.24858 0.94761 0.95193 0.98127 1.69896 1.49802 1.15760 1.17983 0.86965 0.78820 0.82572 0.82062 1.19792 1.21013 1.18981 0.94526 0.94818 0.89581 0.92696 0.93387 0.88968 0.89317 0.89962 0.88093 0.85531 0.85977 0.86349 0.86338 0.86307 0.93884 0.90372 0.91682 0.95205 0.95879 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.00 8.51 -55.88 -0.48 -6.47 16 3 C 0.04 0.49 6.28 37.16 0.23 0.72 16 4 C 0.12 1.70 5.80 -4.04 -0.02 1.68 16 5 N -1.00 -15.24 2.79 -115.67 -0.32 -15.56 16 6 C 0.15 1.88 5.83 -5.20 -0.03 1.85 16 7 C -0.10 -1.22 5.41 -104.62 -0.57 -1.78 16 8 C -0.11 -1.27 7.65 -39.58 -0.30 -1.57 16 9 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 10 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 11 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 12 C -0.11 -1.09 8.94 -39.58 -0.35 -1.45 16 13 S 2.77 56.67 5.95 -107.50 -0.64 56.03 16 14 O -0.93 -22.75 14.42 -65.76 -0.95 -23.70 16 15 O -1.00 -20.98 15.11 -57.17 -0.86 -21.85 16 16 N -0.99 -20.75 3.23 -123.05 -0.40 -21.15 16 17 C 0.09 1.63 10.42 59.85 0.62 2.25 16 18 C 0.23 5.54 4.13 -5.19 -0.02 5.52 16 19 C -0.53 -15.24 9.94 -34.44 -0.34 -15.59 16 20 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 21 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 22 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 23 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.50 8.03 -51.93 -0.42 0.09 16 32 H 0.09 1.48 6.55 -51.93 -0.34 1.14 16 33 H 0.09 0.91 6.49 -51.93 -0.34 0.57 16 34 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 35 H 0.10 1.30 6.68 -51.93 -0.35 0.96 16 36 H 0.13 1.51 7.44 -52.49 -0.39 1.12 16 37 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.99 7.32 -52.49 -0.38 0.61 16 41 H 0.04 0.64 5.42 -51.93 -0.28 0.36 16 42 H 0.08 1.41 8.05 -51.93 -0.42 1.00 16 43 H 0.06 1.11 7.09 -51.93 -0.37 0.74 16 44 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16 45 H 0.02 0.55 5.97 -51.93 -0.31 0.24 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -36.54 380.53 -9.70 -46.24 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.93 Total: 0.95 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -0.96 Total: -9.68 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 0.05 Total: -63.86 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -2.29 Total: -52.02 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 56.67 SS G_CDS: -0.64 Total: 56.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.54 -9.70 -46.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040501544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.683 kcal (2) G-P(sol) polarization free energy of solvation -36.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds