Wall clock time and date at job start Tue Mar 31 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00067 * 2 1 4 4 C 1.52997 * 109.47406 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47323 * 64.99852 * 4 3 2 6 6 C 1.46493 * 120.00078 * 84.99921 * 5 4 3 7 7 C 1.50700 * 109.47183 * 80.10643 * 6 5 4 8 8 C 1.38234 * 119.99802 * 96.11517 * 7 6 5 9 9 C 1.38243 * 120.00048 * 179.97438 * 8 7 6 10 10 C 1.38230 * 119.99797 * 359.97438 * 9 8 7 11 11 C 1.38240 * 120.00198 * 0.28009 * 10 9 8 12 12 C 1.38234 * 120.00267 * 276.09658 * 7 6 5 13 13 S 1.65597 * 120.00141 * 265.00528 * 5 4 3 14 14 O 1.42104 * 106.40473 * 29.57612 * 13 5 4 15 15 O 1.42100 * 106.40560 * 162.49786 * 13 5 4 16 16 N 1.65598 * 107.21766 * 276.03849 * 13 5 4 17 17 C 1.46502 * 120.00016 * 264.16891 * 16 13 5 18 18 C 1.46503 * 120.00364 * 84.16463 * 16 13 5 19 19 C 1.50704 * 109.46999 * 95.00005 * 18 16 13 20 20 H 1.07996 * 119.99963 * 0.02562 * 19 18 16 21 21 C 1.37876 * 119.99994 * 180.02562 * 19 18 16 22 22 N 1.31507 * 120.00079 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99776 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47096 * 90.00106 * 23 21 19 25 25 H 1.48507 * 109.46771 * 209.99711 * 23 21 19 26 26 H 1.48496 * 109.46936 * 329.99712 * 23 21 19 27 27 H 1.09002 * 109.46983 * 299.99885 * 1 2 3 28 28 H 1.08994 * 109.47159 * 60.00044 * 1 2 3 29 29 H 1.09004 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46912 * 59.99713 * 3 2 1 31 31 H 1.08997 * 109.46910 * 300.00515 * 3 2 1 32 32 H 1.09005 * 109.46954 * 305.00138 * 4 3 2 33 33 H 1.09000 * 109.47364 * 185.00296 * 4 3 2 34 34 H 1.09005 * 109.47325 * 320.11469 * 6 5 4 35 35 H 1.08998 * 109.47431 * 200.10909 * 6 5 4 36 36 H 1.08000 * 119.99924 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.99942 * 180.02562 * 9 8 7 38 38 H 1.07999 * 119.99758 * 180.02562 * 10 9 8 39 39 H 1.08001 * 119.99651 * 179.72825 * 11 10 9 40 40 H 1.07991 * 120.00051 * 359.97438 * 12 7 6 41 41 H 1.08995 * 109.47032 * 87.04740 * 17 16 13 42 42 H 1.09003 * 109.47353 * 207.04537 * 17 16 13 43 43 H 1.08997 * 109.47208 * 327.04240 * 17 16 13 44 44 H 1.08994 * 109.47300 * 215.00527 * 18 16 13 45 45 H 1.09006 * 109.47027 * 335.00452 * 18 16 13 46 46 H 0.97006 * 120.00384 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1809 1.3890 -2.4460 7 6 5.5211 2.0726 -2.3600 8 6 6.6218 1.5171 -2.9850 9 6 7.8511 2.1445 -2.9066 10 6 7.9796 3.3276 -2.2035 11 6 6.8800 3.8805 -1.5740 12 6 5.6497 3.2555 -1.6563 13 16 4.2414 -1.0687 -1.3191 14 8 3.3625 -1.6572 -0.3701 15 8 4.2455 -1.4190 -2.6962 16 7 5.7779 -1.3384 -0.7634 17 6 6.8880 -1.4640 -1.7110 18 6 6.0271 -1.4513 0.6759 19 6 6.0138 -2.9043 1.0755 20 1 5.8378 -3.6673 0.3317 21 6 6.2264 -3.2596 2.3907 22 7 6.2143 -4.5275 2.7395 23 14 6.5301 -1.9397 3.6772 24 1 5.2342 -1.5109 4.2620 25 1 7.4008 -2.4849 4.7496 26 1 7.1968 -0.7743 3.0429 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8515 0.5682 0.8410 33 1 3.9785 2.1765 0.0890 34 1 3.3933 2.1400 -2.5086 35 1 4.1517 0.7571 -3.3337 36 1 6.5213 0.5928 -3.5347 37 1 8.7110 1.7106 -3.3953 38 1 8.9399 3.8180 -2.1425 39 1 6.9814 4.8026 -1.0210 40 1 4.7897 3.6899 -1.1686 41 1 7.2887 -0.4753 -1.9343 42 1 7.6712 -2.0830 -1.2732 43 1 6.5303 -1.9272 -2.6305 44 1 6.9993 -1.0185 0.9113 45 1 5.2497 -0.9171 1.2223 46 1 6.3635 -4.7775 3.6648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040501544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:27 Heat of formation + Delta-G solvation = -102.911169 kcal Electronic energy + Delta-G solvation = -30064.846383 eV Core-core repulsion = 26081.196765 eV Total energy + Delta-G solvation = -3983.649618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.26719 -38.96995 -38.17735 -37.26258 -36.95279 -36.67003 -34.49377 -32.74078 -31.73688 -30.25783 -30.24708 -27.30046 -26.82977 -26.43574 -23.85739 -23.65552 -23.13935 -22.05865 -19.88392 -19.17178 -18.63082 -18.31198 -17.77301 -17.49257 -17.06191 -16.72766 -16.35662 -16.15468 -15.92573 -15.75733 -15.58054 -15.17740 -14.77120 -14.49054 -14.36692 -14.23487 -14.04126 -13.86788 -13.44492 -13.29799 -13.27820 -13.15013 -13.09074 -12.96135 -12.92944 -12.60800 -12.36706 -12.34167 -12.22716 -12.14344 -11.97580 -11.76357 -11.74224 -11.68006 -10.77344 -10.47422 -10.09950 -9.81801 -9.62149 -9.59017 -8.27741 -6.33078 -0.32338 0.50904 0.59821 1.35299 1.39988 1.48327 2.07831 2.35784 2.62230 3.00483 3.01864 3.06235 3.47809 3.85645 3.88869 4.02008 4.14703 4.19441 4.22959 4.24630 4.35858 4.43918 4.49471 4.54969 4.60915 4.62824 4.65864 4.68388 4.78304 4.82641 4.84339 4.88351 4.91670 4.98605 5.07801 5.18005 5.25754 5.36925 5.49335 5.54953 5.65069 5.71664 5.77472 5.87200 6.20630 6.33078 6.44840 6.69202 7.29281 8.90245 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.008824 B = 0.005795 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.342164 B = 4830.584993 C = 6244.164100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.032 3.968 4 C 0.118 3.882 5 N -0.988 5.988 6 C 0.152 3.848 7 C -0.117 4.117 8 C -0.127 4.127 9 C -0.128 4.128 10 C -0.124 4.124 11 C -0.126 4.126 12 C -0.106 4.106 13 S 2.783 3.217 14 O -0.979 6.979 15 O -1.014 7.014 16 N -1.000 6.000 17 C 0.089 3.911 18 C 0.243 3.757 19 C -0.539 4.539 20 H 0.024 0.976 21 C 0.006 3.994 22 N -0.949 5.949 23 Si 0.943 3.057 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.230 1.230 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.031 0.969 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 24.466 -8.925 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.046 4.046 4 C -0.007 4.007 5 N -0.827 5.827 6 C 0.028 3.972 7 C -0.119 4.119 8 C -0.146 4.146 9 C -0.146 4.146 10 C -0.142 4.142 11 C -0.144 4.144 12 C -0.124 4.124 13 S 2.792 3.208 14 O -0.962 6.962 15 O -0.999 6.999 16 N -0.840 5.840 17 C -0.056 4.056 18 C 0.118 3.882 19 C -0.578 4.578 20 H 0.042 0.958 21 C -0.191 4.191 22 N -0.590 5.590 23 Si 0.764 3.236 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.152 1.152 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.855 23.505 -9.096 25.365 hybrid contribution 0.188 -0.325 0.743 0.833 sum -2.667 23.179 -8.353 24.782 Atomic orbital electron populations 1.22850 0.80675 1.02670 1.00936 1.88244 1.20506 1.28363 1.95495 1.23229 0.93698 0.85250 1.02373 1.21606 0.93457 1.01333 0.84335 1.57908 1.81218 1.25830 1.17740 1.20442 0.95024 0.95293 0.86486 1.20334 0.95678 0.96488 0.99351 1.21311 0.93476 0.99754 1.00048 1.21363 0.97366 0.96166 0.99723 1.21472 0.99749 0.95846 0.97154 1.21465 0.92664 1.00766 0.99531 1.21273 0.98742 0.94488 0.97939 1.01795 0.72910 0.74012 0.72084 1.93646 1.63740 1.75257 1.63555 1.93452 1.87644 1.83305 1.35459 1.57467 1.25671 1.86677 1.14193 1.21626 0.89954 1.02357 0.91695 1.19121 0.97418 0.94764 0.76914 1.21681 1.48777 0.92908 0.94450 0.95797 1.25946 0.94261 0.98007 1.00906 1.70079 1.51433 1.18653 1.18819 0.85799 0.79281 0.80010 0.78490 1.19115 1.20382 1.15222 0.92594 0.92721 0.90974 0.90133 0.90830 0.91724 0.85174 0.86397 0.89470 0.86645 0.84857 0.84383 0.83921 0.83838 0.90595 0.91304 0.91736 0.93353 0.95105 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.33 8.51 -129.23 -1.10 -14.43 16 3 C 0.03 0.72 6.28 71.98 0.45 1.17 16 4 C 0.12 2.88 5.80 86.38 0.50 3.38 16 5 N -0.99 -28.44 2.79 -519.87 -1.45 -29.88 16 6 C 0.15 3.34 5.83 85.63 0.50 3.84 16 7 C -0.12 -2.41 5.41 -19.87 -0.11 -2.52 16 8 C -0.13 -2.82 7.65 22.27 0.17 -2.65 16 9 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 10 C -0.12 -2.05 10.05 22.27 0.22 -1.82 16 11 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 12 C -0.11 -1.73 8.94 22.27 0.20 -1.53 16 13 S 2.78 115.48 5.95 -56.49 -0.34 115.14 16 14 O -0.98 -49.73 14.42 -119.79 -1.73 -51.45 16 15 O -1.01 -43.83 15.11 -128.00 -1.93 -45.76 16 16 N -1.00 -42.35 3.23 -543.21 -1.75 -44.10 16 17 C 0.09 3.19 10.42 127.77 1.33 4.52 16 18 C 0.24 11.57 4.13 85.63 0.35 11.93 16 19 C -0.54 -32.42 9.94 25.60 0.25 -32.16 16 20 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 21 C 0.01 0.37 5.47 84.66 0.46 0.84 16 22 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 23 Si 0.94 43.45 27.47 68.60 1.88 45.34 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.23 -9.20 6.54 99.48 0.65 -8.55 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.24 8.03 -2.39 -0.02 1.22 16 32 H 0.06 1.97 6.55 -2.38 -0.02 1.95 16 33 H 0.13 2.04 6.49 -2.39 -0.02 2.03 16 34 H 0.12 1.76 8.00 -2.38 -0.02 1.74 16 35 H 0.09 2.17 6.68 -2.39 -0.02 2.16 16 36 H 0.12 2.72 7.44 -2.91 -0.02 2.70 16 37 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.14 1.56 7.32 -2.92 -0.02 1.54 16 41 H 0.08 2.20 5.42 -2.39 -0.01 2.18 16 42 H 0.07 2.55 8.05 -2.39 -0.02 2.53 16 43 H 0.06 2.28 7.09 -2.39 -0.02 2.26 16 44 H 0.05 2.13 7.17 -2.39 -0.02 2.11 16 45 H 0.03 1.44 5.97 -2.38 -0.01 1.43 16 46 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 Total: -1.00 -84.66 380.53 0.84 -83.82 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.91 Total: 19.61 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 6.04 Total: -17.09 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -2.90 Total: -135.17 kcal Atomic # 8 Polarization: -106.88 SS G_CDS: -4.76 Total: -111.64 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.34 kcal Atomic # 16 Polarization: 115.48 SS G_CDS: -0.34 Total: 115.14 kcal Total: -84.66 0.84 -83.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040501544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.087 kcal (2) G-P(sol) polarization free energy of solvation -84.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds