Wall clock time and date at job start Tue Mar 31 2020 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38302 * 119.92103 * 2 1 4 4 C 1.38079 * 120.08032 * 180.02562 * 3 2 1 5 5 C 1.38969 * 119.92298 * 0.23032 * 4 3 2 6 6 S 1.76195 * 120.08398 * 179.74478 * 5 4 3 7 7 C 1.81396 * 103.00389 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47467 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99545 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99899 * 180.02562 * 8 7 6 11 11 C 1.39922 * 119.99779 * 175.48905 * 10 8 7 12 12 C 1.38966 * 120.03506 * 214.84597 * 11 10 8 13 13 C 1.38163 * 120.06540 * 179.71654 * 12 11 10 14 14 C 1.38171 * 120.13636 * 0.55704 * 13 12 11 15 15 C 1.38901 * 120.07321 * 359.72216 * 14 13 12 16 16 O 1.35752 * 120.03458 * 179.97438 * 15 14 13 17 17 C 1.34830 * 116.99939 * 5.36726 * 16 15 14 18 18 H 1.08001 * 120.00043 * 354.95694 * 17 16 15 19 19 C 1.38653 * 120.00242 * 174.96431 * 17 16 15 20 20 N 1.31560 * 119.99911 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00240 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46982 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47404 * 119.99994 * 21 19 17 24 24 H 1.48500 * 109.47046 * 239.99903 * 21 19 17 25 25 C 1.38717 * 120.04022 * 35.11783 * 11 10 8 26 26 C 1.38977 * 119.83791 * 359.49771 * 5 4 3 27 27 C 1.38088 * 119.91689 * 0.50528 * 26 5 4 28 28 H 1.08996 * 109.47383 * 89.99978 * 1 2 3 29 29 H 1.09000 * 109.46723 * 209.99787 * 1 2 3 30 30 H 1.08998 * 109.46854 * 329.99234 * 1 2 3 31 31 H 1.08006 * 119.95712 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.03693 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.46966 * 300.00429 * 7 6 5 34 34 H 1.09002 * 109.46873 * 59.99957 * 7 6 5 35 35 H 0.97001 * 120.00212 * 355.48422 * 10 8 7 36 36 H 1.07999 * 119.96574 * 359.97438 * 12 11 10 37 37 H 1.08000 * 119.92983 * 180.25564 * 13 12 11 38 38 H 1.08003 * 119.95729 * 179.73970 * 14 13 12 39 39 H 0.97000 * 120.00062 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.06138 * 359.97438 * 25 11 10 41 41 H 1.08003 * 120.04452 * 180.24720 * 26 5 4 42 42 H 1.08004 * 119.95555 * 179.74979 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2025 -0.0005 5 6 4.2742 0.0000 -0.0059 6 16 6.0362 0.0000 -0.0134 7 6 6.4443 -1.7675 -0.0195 8 6 7.9417 -1.9373 -0.0256 9 8 8.6626 -0.9619 -0.0264 10 7 8.4796 -3.1730 -0.0314 11 6 9.8661 -3.3319 -0.1324 12 6 10.3935 -4.4109 -0.8314 13 6 11.7625 -4.5652 -0.9365 14 6 12.6112 -3.6542 -0.3376 15 6 12.0903 -2.5767 0.3674 16 8 12.9250 -1.6824 0.9559 17 6 14.2449 -1.8336 0.7259 18 1 14.6012 -2.6852 0.1653 19 6 15.1448 -0.8961 1.2091 20 7 14.7108 0.1415 1.8917 21 14 16.9734 -1.1060 0.8910 22 1 17.2001 -2.3461 0.1061 23 1 17.4807 0.0628 0.1283 24 1 17.6934 -1.2020 2.1863 25 6 10.7158 -2.4156 0.4699 26 6 3.5777 -1.2026 -0.0002 27 6 2.1968 -1.1987 0.0003 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6549 2.1329 0.0004 32 1 4.1157 2.1390 -0.0010 33 1 6.0291 -2.2393 0.8711 34 1 6.0216 -2.2349 -0.9089 35 1 7.9057 -3.9522 0.0346 36 1 9.7326 -5.1274 -1.2965 37 1 12.1699 -5.4024 -1.4838 38 1 13.6809 -3.7799 -0.4181 39 1 15.3404 0.7972 2.2301 40 1 10.3084 -1.5784 1.0171 41 1 4.1157 -2.1391 -0.0003 42 1 1.6549 -2.1330 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040542408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:05 Heat of formation + Delta-G solvation = -5.111647 kcal Electronic energy + Delta-G solvation = -24998.410948 eV Core-core repulsion = 21228.592493 eV Total energy + Delta-G solvation = -3769.818455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.103 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.23726 -39.45542 -38.62592 -36.56613 -34.20652 -33.19993 -32.24819 -31.61910 -30.66334 -29.28454 -28.06637 -27.31808 -25.29025 -23.17946 -22.47201 -21.89253 -21.45445 -20.39470 -18.43034 -18.10282 -17.29510 -16.85333 -16.10267 -15.79374 -15.68617 -15.50977 -15.08204 -14.81285 -14.36367 -14.26350 -14.18314 -13.94768 -13.70371 -13.56328 -13.41096 -13.17999 -12.77925 -12.63918 -12.53184 -12.48860 -11.77739 -11.73607 -11.53547 -11.41006 -11.22126 -11.03433 -10.81472 -10.42915 -10.34273 -9.95422 -9.79036 -9.74339 -9.30721 -9.22843 -8.81943 -7.76318 -7.52209 -7.21182 -6.41508 -4.00881 0.88040 1.05602 1.08082 1.92494 2.15473 2.31429 2.68371 3.09359 3.14612 3.16963 3.21788 3.34946 3.98815 4.42915 4.43752 4.54097 4.57031 4.61975 4.64860 4.82970 4.93159 5.03801 5.12441 5.21746 5.30544 5.33028 5.35398 5.59688 5.63470 5.69055 5.78771 5.95199 6.00174 6.05697 6.17022 6.25346 6.35203 6.59657 6.61963 6.80353 7.00271 7.05854 7.33270 7.45378 7.56454 7.74811 8.02842 8.17830 9.03133 9.73794 10.76266 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.001918 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.827783 B =14595.400623 C =15775.655881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.101 4.101 4 C -0.095 4.095 5 C -0.104 4.104 6 S -0.023 6.023 7 C -0.151 4.151 8 C 0.523 3.477 9 O -0.487 6.487 10 N -0.663 5.663 11 C 0.172 3.828 12 C -0.234 4.234 13 C -0.058 4.058 14 C -0.244 4.244 15 C 0.166 3.834 16 O -0.172 6.172 17 C -0.392 4.392 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.186 4.186 26 C -0.134 4.134 27 C -0.101 4.101 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.407 0.593 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.270 0.730 40 H 0.134 0.866 41 H 0.122 0.878 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.709 -5.429 -4.486 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.217 4.217 6 S 0.222 5.778 7 C -0.303 4.303 8 C 0.307 3.693 9 O -0.360 6.360 10 N -0.309 5.309 11 C 0.079 3.921 12 C -0.256 4.256 13 C -0.077 4.077 14 C -0.263 4.263 15 C 0.111 3.889 16 O -0.075 6.075 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.207 4.207 26 C -0.158 4.158 27 C -0.120 4.120 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.242 0.758 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.152 0.848 41 H 0.140 0.860 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.243 -3.400 -4.223 24.842 hybrid contribution -0.311 -1.754 -0.193 1.791 sum -24.554 -5.153 -4.416 25.474 Atomic orbital electron populations 1.20778 0.91080 1.02793 1.02308 1.19943 0.96161 0.93149 1.00782 1.20978 0.93510 0.97737 0.99807 1.20742 0.93945 0.96538 1.00714 1.22174 0.98551 0.96613 1.04370 1.86506 0.95508 1.04233 1.91584 1.23800 0.97939 1.00732 1.07800 1.19613 0.88486 0.83793 0.77418 1.90866 1.61236 1.38103 1.45771 1.43182 1.06530 1.07950 1.73195 1.17149 0.80713 0.96530 0.97691 1.20254 0.95382 1.01479 1.08436 1.20506 0.92390 0.97540 0.97286 1.21198 1.00640 0.97983 1.06524 1.19126 0.90194 0.89135 0.90397 1.83994 1.17524 1.45718 1.60284 1.21399 0.78555 1.10176 1.36710 0.88905 1.25319 1.00318 0.94720 0.96237 1.70066 1.35346 1.10827 1.33080 0.85631 0.80599 0.78665 0.78409 1.19081 1.20128 1.20164 1.20169 0.90411 1.03097 1.07043 1.21156 0.94909 0.96399 1.03375 1.20928 0.93577 0.97683 0.99832 0.91201 0.91586 0.91508 0.85564 0.85294 0.86391 0.86392 0.75804 0.87351 0.86973 0.85383 0.92030 0.84794 0.85977 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 36.01 0.36 -0.22 16 2 C -0.10 -0.76 5.88 -104.57 -0.62 -1.37 16 3 C -0.10 -0.83 9.69 -39.62 -0.38 -1.22 16 4 C -0.10 -0.94 9.79 -39.37 -0.39 -1.33 16 5 C -0.10 -1.11 6.11 -39.04 -0.24 -1.35 16 6 S -0.02 -0.29 21.06 -107.50 -2.26 -2.55 16 7 C -0.15 -1.54 4.82 36.01 0.17 -1.36 16 8 C 0.52 7.77 7.69 -10.99 -0.08 7.68 16 9 O -0.49 -9.87 13.31 5.55 0.07 -9.80 16 10 N -0.66 -9.08 5.34 -9.88 -0.05 -9.13 16 11 C 0.17 3.15 6.30 -83.72 -0.53 2.63 16 12 C -0.23 -3.92 9.96 -39.34 -0.39 -4.31 16 13 C -0.06 -1.05 10.03 -39.63 -0.40 -1.45 16 14 C -0.24 -5.35 9.17 -39.36 -0.36 -5.71 16 15 C 0.17 4.20 6.64 -39.14 -0.26 3.94 16 16 O -0.17 -5.12 9.76 0.04 0.00 -5.12 16 17 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.86 13.67 55.48 0.76 -25.11 16 21 Si 0.94 20.86 29.55 -169.99 -5.02 15.83 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 C -0.19 -4.27 8.64 -39.21 -0.34 -4.61 16 26 C -0.13 -1.20 9.36 -39.36 -0.37 -1.56 16 27 C -0.10 -0.79 9.69 -39.61 -0.38 -1.18 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.12 0.89 7.74 -51.92 -0.40 0.49 16 34 H 0.12 0.88 7.76 -51.92 -0.40 0.48 16 35 H 0.41 3.66 8.82 -40.82 -0.36 3.30 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.13 2.79 5.63 -52.48 -0.30 2.50 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 40 H 0.13 3.31 6.23 -52.49 -0.33 2.98 16 41 H 0.12 0.84 5.88 -52.48 -0.31 0.53 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -35.43 372.94 -9.77 -45.21 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.88 Total: 6.39 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -4.01 Total: -21.35 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.71 Total: -34.24 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.07 Total: -14.92 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -2.26 Total: -2.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.43 -9.77 -45.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040542408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.095 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds