Wall clock time and date at job start Tue Mar 31 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38388 * 119.60698 * 2 1 4 4 N 1.32222 * 121.45938 * 359.97438 * 3 2 1 5 5 C 1.31900 * 121.51480 * 180.02562 * 4 3 2 6 6 C 1.50693 * 119.21876 * 180.02562 * 5 4 3 7 7 F 1.39901 * 109.47018 * 5.00427 * 6 5 4 8 8 F 1.39899 * 109.47118 * 125.00178 * 6 5 4 9 9 F 1.39899 * 109.47616 * 244.99994 * 6 5 4 10 10 C 1.38477 * 121.56952 * 0.02562 * 5 4 3 11 11 C 1.38503 * 119.43872 * 359.97438 * 10 5 4 12 12 C 1.39426 * 117.88117 * 0.02562 * 11 10 5 13 13 C 1.47242 * 121.94129 * 179.97438 * 12 11 10 14 14 O 1.21592 * 120.91593 * 0.02562 * 13 12 11 15 15 N 1.35146 * 118.17748 * 179.77790 * 13 12 11 16 16 C 1.46500 * 119.45840 * 180.23366 * 15 13 12 17 17 C 1.53001 * 109.46713 * 270.28262 * 16 15 13 18 18 C 1.50703 * 109.46529 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00343 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99955 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99983 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00236 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46767 * 60.00092 * 22 20 18 24 24 H 1.48497 * 109.46986 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47268 * 300.00288 * 22 20 18 26 26 C 1.34227 * 121.08320 * 0.51978 * 15 13 12 27 27 O 1.21573 * 118.52573 * 179.71437 * 26 15 13 28 28 H 1.08994 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46863 * 299.97846 * 1 2 3 30 30 H 1.09006 * 109.47297 * 59.97188 * 1 2 3 31 31 H 1.07994 * 120.27861 * 179.97438 * 10 5 4 32 32 H 1.08004 * 121.06216 * 179.97438 * 11 10 5 33 33 H 1.09001 * 109.46555 * 30.28161 * 16 15 13 34 34 H 1.08998 * 109.47098 * 150.28201 * 16 15 13 35 35 H 1.08992 * 109.47079 * 299.99621 * 17 16 15 36 36 H 1.08998 * 109.47389 * 60.00116 * 17 16 15 37 37 H 0.97000 * 120.00310 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1487 1.2032 0.0000 4 7 1.5090 2.3604 -0.0005 5 6 2.1595 3.5078 -0.0010 6 6 1.3782 4.7964 -0.0010 7 9 0.0129 4.5139 0.1147 8 9 1.7838 5.5876 1.0791 9 9 1.6126 5.4840 -1.1966 10 6 3.5434 3.5566 -0.0016 11 6 4.2662 2.3751 -0.0010 12 6 3.5552 1.1757 -0.0005 13 6 4.2327 -0.1315 -0.0005 14 8 5.4463 -0.2062 -0.0005 15 7 3.4687 -1.2463 0.0046 16 6 4.1136 -2.5617 0.0100 17 6 4.3438 -3.0226 -1.4307 18 6 5.0066 -4.3760 -1.4252 19 1 5.2406 -4.8589 -0.4879 20 6 5.3142 -4.9979 -2.6167 21 7 5.0288 -4.4101 -3.7581 22 14 6.1364 -6.6752 -2.6099 23 1 5.2631 -7.6516 -1.9106 24 1 6.3586 -7.1231 -4.0081 25 1 7.4405 -6.5843 -1.9054 26 6 2.1287 -1.1681 -0.0009 27 8 1.4869 -2.2006 -0.0012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3634 0.5143 -0.8898 31 1 4.0548 4.5078 -0.0024 32 1 5.3462 2.3825 -0.0019 33 1 5.0706 -2.4950 0.5275 34 1 3.4724 -3.2786 0.5228 35 1 3.3868 -3.0893 -1.9481 36 1 4.9850 -2.3057 -1.9435 37 1 5.2455 -4.8474 -4.5963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040543270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:56 Heat of formation + Delta-G solvation = -152.342597 kcal Electronic energy + Delta-G solvation = -29979.313773 eV Core-core repulsion = 25114.960950 eV Total energy + Delta-G solvation = -4864.352823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.56401 -48.10227 -47.99229 -42.49111 -40.29296 -39.12792 -36.49097 -35.40380 -33.70286 -33.06574 -31.71417 -30.38240 -27.93641 -27.09518 -25.41088 -24.45852 -23.76840 -22.57664 -21.44161 -20.38553 -19.37398 -18.95472 -18.74898 -18.18743 -17.70342 -17.11623 -16.44962 -16.10794 -15.78640 -15.10419 -15.06056 -14.95989 -14.83977 -14.77051 -14.48471 -14.45738 -14.37168 -14.16278 -14.14032 -14.02801 -13.78975 -13.21181 -12.94339 -12.70466 -12.45725 -12.36738 -11.68368 -11.14639 -11.05355 -10.94850 -10.79412 -10.62098 -10.61783 -10.22196 -10.09747 -10.06992 -9.30117 -9.08792 -8.83799 -8.41225 -6.06328 -4.10239 -0.25193 0.47493 1.62557 1.95886 2.04370 2.46631 2.72753 3.03327 3.32376 3.36199 3.38788 3.42236 3.45666 3.69147 3.92614 3.99722 4.29614 4.40163 4.42319 4.53446 4.98585 5.02732 5.23746 5.28198 5.30438 5.54821 5.61018 5.69960 5.76395 5.82914 6.17685 6.25382 6.59578 6.87971 7.21656 7.49159 7.53681 7.65556 7.86449 7.93555 8.26479 8.94122 9.53741 11.05390 Molecular weight = 343.09amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.002763 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.466195 B =10129.997197 C =10642.462586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.531 5.531 3 C 0.412 3.588 4 N -0.478 5.478 5 C 0.105 3.895 6 C 0.524 3.476 7 F -0.159 7.159 8 F -0.167 7.167 9 F -0.166 7.166 10 C -0.166 4.166 11 C 0.035 3.965 12 C -0.208 4.208 13 C 0.562 3.438 14 O -0.473 6.473 15 N -0.546 5.546 16 C 0.111 3.889 17 C 0.015 3.985 18 C -0.521 4.521 19 H 0.060 0.940 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.705 3.295 27 O -0.514 6.514 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.601 20.986 9.307 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.256 5.256 3 C 0.178 3.822 4 N -0.193 5.193 5 C -0.037 4.037 6 C 0.468 3.532 7 F -0.140 7.140 8 F -0.148 7.148 9 F -0.147 7.147 10 C -0.188 4.188 11 C 0.008 3.992 12 C -0.218 4.218 13 C 0.351 3.649 14 O -0.344 6.344 15 N -0.289 5.289 16 C -0.007 4.007 17 C -0.023 4.023 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.407 3.593 27 O -0.384 6.384 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.178 0.822 32 H 0.189 0.811 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.287 20.137 9.120 23.608 hybrid contribution 1.039 -0.551 -0.241 1.201 sum -7.248 19.586 8.879 22.693 Atomic orbital electron populations 1.21994 0.74111 1.05635 1.03698 1.44683 1.09598 1.01780 1.69553 1.18138 0.87087 0.85979 0.91029 1.66518 1.39661 0.96004 1.17077 1.20896 0.91777 0.91408 0.99600 1.17784 0.78022 0.83083 0.74274 1.93257 1.31775 1.93428 1.95551 1.93254 1.90394 1.75710 1.55478 1.93266 1.94305 1.80901 1.46268 1.21715 0.92588 1.00856 1.03671 1.21533 1.02011 0.88636 0.86977 1.20663 0.92498 0.96379 1.12226 1.17991 0.87254 0.83154 0.76496 1.90869 1.12053 1.86424 1.45077 1.46601 1.05020 1.11487 1.65793 1.22440 0.97118 0.77290 1.03874 1.19379 0.97756 0.96793 0.88335 1.20926 1.39960 1.02365 0.92745 0.92225 1.24991 0.95684 0.98063 0.95449 1.69960 1.47235 1.38543 0.97361 0.86552 0.79950 0.83866 0.77036 1.20075 1.21234 1.20071 1.15512 0.82272 0.83165 0.78339 1.91036 1.64768 1.30321 1.52313 0.87655 0.90278 0.90197 0.82166 0.81127 0.89068 0.88981 0.95840 0.95967 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.07 59.85 0.60 1.54 16 2 N -0.53 -7.49 3.05 -128.32 -0.39 -7.88 16 3 C 0.41 5.40 7.38 -155.18 -1.15 4.25 16 4 N -0.48 -5.55 9.01 -8.38 -0.08 -5.62 16 5 C 0.10 1.01 6.27 -82.48 -0.52 0.49 16 6 C 0.52 4.57 3.31 36.00 0.12 4.69 16 7 F -0.16 -1.57 16.83 2.25 0.04 -1.53 16 8 F -0.17 -1.34 17.15 2.25 0.04 -1.31 16 9 F -0.17 -1.44 17.28 2.25 0.04 -1.40 16 10 C -0.17 -1.30 9.57 -39.40 -0.38 -1.67 16 11 C 0.03 0.33 9.78 -39.04 -0.38 -0.05 16 12 C -0.21 -2.76 5.88 -104.88 -0.62 -3.37 16 13 C 0.56 9.56 7.64 -12.44 -0.10 9.46 16 14 O -0.47 -9.00 16.25 5.28 0.09 -8.91 16 15 N -0.55 -10.15 2.56 -122.15 -0.31 -10.47 16 16 C 0.11 2.35 4.99 -4.04 -0.02 2.33 16 17 C 0.02 0.40 5.30 -27.88 -0.15 0.25 16 18 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 22 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 C 0.70 12.36 8.10 -87.79 -0.71 11.64 16 27 O -0.51 -10.22 14.83 5.30 0.08 -10.14 16 28 H 0.10 1.19 6.78 -51.93 -0.35 0.84 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.17 1.33 7.86 -52.48 -0.41 0.91 16 33 H 0.09 1.87 7.43 -51.93 -0.39 1.48 16 34 H 0.09 1.91 7.31 -51.93 -0.38 1.53 16 35 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -33.12 339.99 -6.55 -39.66 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -3.18 Total: -4.12 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: -3.70 Total: 16.18 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.04 Total: -50.17 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.16 Total: -19.05 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.12 Total: -4.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.12 -6.55 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040543270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.682 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds