Wall clock time and date at job start Tue Mar 31 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48496 * 109.47168 * 270.00118 * 3 2 1 5 5 H 1.48507 * 109.46819 * 29.99996 * 3 2 1 6 6 H 1.48496 * 109.47229 * 149.99791 * 3 2 1 7 7 C 1.38953 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00432 * 175.01549 * 7 2 1 9 9 N 1.37098 * 119.99655 * 355.01491 * 7 2 1 10 10 C 1.46501 * 120.00273 * 5.72542 * 9 7 2 11 11 C 1.50693 * 109.47261 * 265.46737 * 10 9 7 12 12 C 1.38244 * 120.00061 * 274.96483 * 11 10 9 13 13 C 1.38230 * 119.99992 * 179.76664 * 12 11 10 14 14 C 1.38239 * 120.00090 * 0.50476 * 13 12 11 15 15 C 1.38235 * 119.99812 * 359.74958 * 14 13 12 16 16 C 1.38234 * 120.00341 * 359.97438 * 15 14 13 17 17 C 1.34776 * 119.99727 * 185.72860 * 9 7 2 18 18 O 1.21297 * 120.00167 * 179.97438 * 17 9 7 19 19 C 1.50702 * 120.00329 * 359.97438 * 17 9 7 20 20 C 1.52995 * 109.47151 * 179.97438 * 19 17 9 21 21 N 1.46501 * 109.46822 * 179.97438 * 20 19 17 22 22 C 1.34783 * 120.00040 * 180.27554 * 21 20 19 23 23 O 1.21620 * 119.99423 * 359.72474 * 22 21 20 24 24 C 1.47368 * 120.00283 * 179.72527 * 22 21 20 25 25 C 1.47020 * 127.19374 * 179.97438 * 24 22 21 26 26 C 1.34187 * 105.95525 * 180.02562 * 25 24 22 27 27 O 1.34211 * 109.12408 * 359.97438 * 26 25 24 28 28 C 1.33656 * 110.90841 * 359.73153 * 27 26 25 29 29 H 0.97000 * 119.99999 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46963 * 25.46643 * 10 9 7 31 31 H 1.08997 * 109.47262 * 145.46210 * 10 9 7 32 32 H 1.07993 * 119.99445 * 359.97438 * 12 11 10 33 33 H 1.08003 * 120.00191 * 180.23108 * 13 12 11 34 34 H 1.08002 * 119.99895 * 179.72444 * 14 13 12 35 35 H 1.08001 * 120.00031 * 179.97438 * 15 14 13 36 36 H 1.07993 * 120.00197 * 179.97438 * 16 15 14 37 37 H 1.09006 * 109.46799 * 60.00106 * 19 17 9 38 38 H 1.08999 * 109.47235 * 300.00451 * 19 17 9 39 39 H 1.08997 * 109.47306 * 60.00104 * 20 19 17 40 40 H 1.08999 * 109.47441 * 300.00352 * 20 19 17 41 41 H 0.96995 * 120.00640 * 0.02562 * 21 20 19 42 42 H 1.07995 * 127.02455 * 359.97438 * 25 24 22 43 43 H 1.07996 * 125.43753 * 180.02562 * 26 25 24 44 44 H 1.07996 * 125.80631 * 180.28548 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0858 -1.2052 -0.0807 9 7 1.3272 -2.3883 0.1042 10 6 -0.1377 -2.3947 0.0881 11 6 -0.6557 -2.3760 1.5031 12 6 -0.7911 -3.5590 2.2053 13 6 -1.2617 -3.5414 3.5049 14 6 -1.6069 -2.3418 4.0989 15 6 -1.4765 -1.1593 3.3949 16 6 -1.0004 -1.1763 2.0972 17 6 2.0048 -3.5475 0.2211 18 8 1.4019 -4.5959 0.3133 19 6 3.5118 -3.5411 0.2372 20 6 4.0263 -4.9750 0.3788 21 7 5.4912 -4.9688 0.3938 22 6 6.1690 -6.1285 0.5054 23 8 5.5643 -7.1795 0.5988 24 6 7.6426 -6.1228 0.5144 25 6 8.5351 -7.2856 0.6283 26 6 9.7843 -6.7967 0.5915 27 8 9.7304 -5.4615 0.4668 28 6 8.4638 -5.0382 0.4127 29 1 -0.4850 0.8400 0.0004 30 1 -0.4990 -1.5138 -0.4427 31 1 -0.4916 -3.2936 -0.4166 32 1 -0.5260 -4.4966 1.7396 33 1 -1.3640 -4.4653 4.0549 34 1 -1.9788 -2.3285 5.1128 35 1 -1.7465 -0.2221 3.8587 36 1 -0.8990 -0.2525 1.5471 37 1 3.8636 -2.9444 1.0788 38 1 3.8833 -3.1116 -0.6932 39 1 3.6745 -5.5720 -0.4625 40 1 3.6548 -5.4041 1.3093 41 1 5.9736 -4.1305 0.3197 42 1 8.2448 -8.3214 0.7231 43 1 10.6886 -7.3841 0.6517 44 1 8.1446 -4.0117 0.3092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040555771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:06 Heat of formation + Delta-G solvation = -4.216516 kcal Electronic energy + Delta-G solvation = -28778.550788 eV Core-core repulsion = 24663.736939 eV Total energy + Delta-G solvation = -4114.813848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.73714 -39.44576 -38.96318 -37.78413 -35.35804 -34.72187 -33.07428 -31.80867 -31.31728 -30.49331 -29.84059 -29.36953 -25.95968 -25.11844 -23.89018 -22.31151 -21.64244 -21.58488 -20.43720 -20.16284 -19.17075 -18.58048 -17.11866 -16.56458 -16.37144 -16.13111 -15.76241 -15.38974 -15.30679 -14.88058 -14.49046 -14.38295 -14.25603 -13.96810 -13.86728 -13.29162 -13.11803 -13.01446 -12.71955 -12.51764 -12.49772 -11.97951 -11.94172 -11.58303 -11.39151 -11.24251 -10.91604 -10.72186 -10.51879 -10.47478 -10.31260 -10.01631 -10.00958 -9.80647 -9.33302 -9.09890 -8.88525 -8.63410 -7.99412 -7.88511 -7.72541 -6.19840 -4.12502 1.17316 1.88181 2.25446 2.37513 2.68396 2.96767 3.07795 3.09770 3.19160 3.37178 3.72300 3.89724 4.36667 4.49120 4.57278 4.86750 4.88484 5.00271 5.24212 5.41215 5.46135 5.59092 5.67699 5.68095 5.80303 5.87534 5.89036 6.05617 6.15995 6.28568 6.35782 6.38506 6.48802 6.58733 6.64978 6.70592 6.79166 6.97545 7.00906 7.18573 7.36981 7.37975 7.54866 7.56487 7.74368 7.93146 8.05823 8.27950 8.44405 8.92363 9.36567 9.75711 10.41282 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.002744 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.079899 B =10199.889819 C =11697.712707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.101 0.899 9 N -0.438 5.438 10 C 0.114 3.886 11 C -0.064 4.064 12 C -0.113 4.113 13 C -0.146 4.146 14 C -0.138 4.138 15 C -0.152 4.152 16 C -0.096 4.096 17 C 0.460 3.540 18 O -0.598 6.598 19 C -0.135 4.135 20 C 0.138 3.862 21 N -0.725 5.725 22 C 0.582 3.418 23 O -0.535 6.535 24 C -0.230 4.230 25 C -0.165 4.165 26 C -0.044 4.044 27 O -0.176 6.176 28 C 0.018 3.982 29 H 0.269 0.731 30 H 0.179 0.821 31 H 0.038 0.962 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.169 0.831 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.396 0.604 42 H 0.159 0.841 43 H 0.208 0.792 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.321 -1.783 1.145 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.431 4.431 8 H 0.119 0.881 9 N -0.155 5.155 10 C -0.008 4.008 11 C -0.065 4.065 12 C -0.131 4.131 13 C -0.165 4.165 14 C -0.157 4.157 15 C -0.171 4.171 16 C -0.114 4.114 17 C 0.248 3.752 18 O -0.484 6.484 19 C -0.175 4.175 20 C 0.015 3.985 21 N -0.376 5.376 22 C 0.368 3.632 23 O -0.413 6.413 24 C -0.235 4.235 25 C -0.185 4.185 26 C -0.110 4.110 27 O -0.071 6.071 28 C -0.052 4.052 29 H 0.082 0.918 30 H 0.194 0.806 31 H 0.056 0.944 32 H 0.139 0.861 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.185 0.815 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.229 0.771 42 H 0.177 0.823 43 H 0.225 0.775 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.681 -2.688 1.217 12.048 hybrid contribution 0.531 1.021 0.323 1.196 sum 12.213 -1.666 1.540 12.422 Atomic orbital electron populations 1.69164 1.05667 1.25879 1.50634 1.25213 0.95649 0.99825 0.96670 0.85800 0.79082 0.80648 0.78452 1.20275 1.20482 1.19650 1.19879 0.92803 0.83167 1.47217 0.88127 1.43827 1.05452 1.04973 1.61249 1.21850 0.79777 1.05688 0.93487 1.20339 0.96460 0.92095 0.97641 1.21453 0.98260 0.99147 0.94257 1.20948 1.02505 0.97087 0.95917 1.20947 1.02379 0.93362 0.98980 1.21217 1.02720 0.96889 0.96236 1.22627 0.93569 1.01627 0.93604 1.19786 0.88542 0.84248 0.82658 1.90552 1.70245 1.31299 1.56326 1.21582 0.96064 0.96101 1.03770 1.21132 0.76636 0.97108 1.03620 1.45942 1.08389 1.08412 1.74852 1.17252 0.85305 0.83958 0.76641 1.90806 1.69787 1.31088 1.49573 1.21639 0.94301 0.94139 1.13400 1.22818 0.91081 0.99720 1.04882 1.23940 0.99820 0.80396 1.06803 1.83788 1.28960 1.23844 1.70492 1.24490 0.80569 0.99490 1.00695 0.91776 0.80608 0.94354 0.86061 0.87711 0.87920 0.87750 0.81481 0.89474 0.89563 0.90722 0.90733 0.77084 0.82309 0.77522 0.77137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -19.34 5.74 55.50 0.32 -19.02 16 2 C 0.02 0.54 5.45 -17.47 -0.10 0.45 16 3 Si 0.93 17.39 29.56 -169.99 -5.02 12.36 16 4 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.30 -6.80 9.39 -14.93 -0.14 -6.94 16 8 H 0.10 2.05 6.32 -52.49 -0.33 1.72 16 9 N -0.44 -10.20 2.62 -116.10 -0.30 -10.50 16 10 C 0.11 2.68 4.97 -5.20 -0.03 2.66 16 11 C -0.06 -1.47 5.43 -104.62 -0.57 -2.03 16 12 C -0.11 -2.49 9.40 -39.58 -0.37 -2.86 16 13 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 14 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 15 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 16 C -0.10 -2.09 9.21 -39.58 -0.36 -2.45 16 17 C 0.46 10.31 7.60 -10.98 -0.08 10.23 16 18 O -0.60 -14.88 14.08 5.54 0.08 -14.80 16 19 C -0.13 -2.33 4.19 -27.88 -0.12 -2.44 16 20 C 0.14 2.34 4.96 -4.04 -0.02 2.32 16 21 N -0.72 -9.78 5.55 -61.40 -0.34 -10.12 16 22 C 0.58 8.87 7.81 -12.54 -0.10 8.77 16 23 O -0.53 -10.49 16.98 5.26 0.09 -10.40 16 24 C -0.23 -2.76 6.31 -103.28 -0.65 -3.41 16 25 C -0.17 -1.76 11.01 -37.45 -0.41 -2.17 16 26 C -0.04 -0.35 12.03 29.31 0.35 0.00 16 27 O -0.18 -1.57 10.52 7.65 0.08 -1.49 16 28 C 0.02 0.16 11.61 30.08 0.35 0.51 16 29 H 0.27 5.65 8.08 -40.82 -0.33 5.32 16 30 H 0.18 4.27 4.56 -81.48 -0.37 3.89 16 31 H 0.04 0.93 7.54 -51.93 -0.39 0.54 16 32 H 0.12 2.80 6.82 -52.49 -0.36 2.45 16 33 H 0.10 1.80 8.06 -52.48 -0.42 1.37 16 34 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.17 3.69 4.55 -52.62 -0.24 3.45 16 37 H 0.09 1.41 7.98 -51.93 -0.41 1.00 16 38 H 0.09 1.34 7.82 -51.93 -0.41 0.93 16 39 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 40 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 41 H 0.40 3.87 7.44 -40.82 -0.30 3.56 16 42 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.21 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.21 1.04 7.47 -52.49 -0.39 0.65 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -30.42 370.97 -8.24 -38.66 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -5.29 Total: 16.66 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -3.44 Total: -6.95 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: -0.33 Total: -39.64 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: 0.25 Total: -26.69 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.02 Total: 12.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.42 -8.24 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040555771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.447 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds