Wall clock time and date at job start Tue Mar 31 2020 06:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46739 * 2 1 4 4 C 1.46501 * 119.99722 * 269.99605 * 3 2 1 5 5 C 1.50701 * 109.46763 * 90.00845 * 4 3 2 6 6 H 1.08002 * 120.00156 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99726 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99791 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00474 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47229 * 90.00178 * 9 7 5 11 11 H 1.48499 * 109.47525 * 210.00733 * 9 7 5 12 12 H 1.48508 * 109.47049 * 330.00362 * 9 7 5 13 13 C 1.38720 * 120.00194 * 90.00681 * 3 2 1 14 14 C 1.39448 * 119.87471 * 179.72693 * 13 3 2 15 15 C 1.36409 * 120.12642 * 179.71244 * 14 13 3 16 16 C 1.40504 * 119.86767 * 0.57446 * 15 14 13 17 17 C 1.41713 * 120.12194 * 179.71833 * 16 15 14 18 18 C 1.38669 * 119.99872 * 46.38152 * 17 16 15 19 19 C 1.47622 * 121.51029 * 10.19708 * 18 17 16 20 20 O 1.21682 * 121.11188 * 0.02562 * 19 18 17 21 21 N 1.35039 * 117.77546 * 179.97438 * 19 18 17 22 22 C 1.34095 * 121.08150 * 0.02562 * 21 19 18 23 23 O 1.21827 * 118.19732 * 180.02562 * 22 21 19 24 24 N 1.33085 * 123.60827 * 0.02562 * 22 21 19 25 25 C 1.32213 * 122.08017 * 359.66280 * 24 22 21 26 26 O 1.34959 * 120.76650 * 180.30469 * 25 24 22 27 27 C 1.40498 * 119.75293 * 359.70003 * 16 15 14 28 28 C 1.36401 * 119.87313 * 359.97438 * 27 16 15 29 29 H 1.08997 * 109.46899 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47284 * 59.99939 * 1 2 3 31 31 H 1.09001 * 109.46751 * 299.99974 * 1 2 3 32 32 H 1.09000 * 109.47527 * 119.99858 * 2 1 3 33 33 H 1.08998 * 109.47208 * 239.99833 * 2 1 3 34 34 H 1.09000 * 109.47026 * 210.00300 * 4 3 2 35 35 H 1.08998 * 109.47423 * 330.00853 * 4 3 2 36 36 H 0.97000 * 119.99967 * 179.97438 * 8 7 5 37 37 H 1.08000 * 119.93753 * 359.97438 * 14 13 3 38 38 H 1.08006 * 120.06274 * 180.29167 * 15 14 13 39 39 H 1.08000 * 120.00103 * 226.38208 * 17 16 15 40 40 H 0.96994 * 119.45832 * 179.97438 * 21 19 18 41 41 H 0.96703 * 113.99604 * 0.28554 * 26 25 24 42 42 H 1.08002 * 120.06463 * 180.02562 * 27 16 15 43 43 H 1.07994 * 119.93614 * 180.02562 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 1.0066 2.7822 -1.7037 6 1 0.1156 2.7247 -1.0961 7 6 0.9948 3.5048 -2.8780 8 7 -0.1013 4.1244 -3.2579 9 14 2.5356 3.6037 -3.9294 10 1 2.5400 2.4864 -4.9075 11 1 2.5566 4.8983 -4.6564 12 1 3.7354 3.5049 -3.0598 13 6 2.2496 2.0352 1.2013 14 6 2.7197 3.3480 1.1982 15 6 2.9434 3.9979 2.3765 16 6 2.7105 3.3379 3.5948 17 6 2.9467 4.0060 4.8221 18 6 2.4814 5.2989 5.0084 19 6 1.5526 5.9302 4.0503 20 8 1.1649 5.3327 3.0637 21 7 1.1467 7.1925 4.3059 22 6 1.5739 7.8502 5.3936 23 8 1.1740 8.9868 5.5731 24 7 2.4108 7.3295 6.2879 25 6 2.8869 6.1015 6.1724 26 8 3.7296 5.5978 7.0984 27 6 2.2423 2.0132 3.5918 28 6 2.0158 1.3754 2.4075 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.0643 2.7985 -1.1384 35 1 2.5505 1.3451 -2.0284 36 1 -0.1095 4.6330 -4.0838 37 1 2.9031 3.8526 0.2611 38 1 3.3030 5.0163 2.3729 39 1 3.4892 3.5082 5.6122 40 1 0.5368 7.6309 3.6923 41 1 3.9299 6.2082 7.8213 42 1 2.0612 1.5012 4.5253 43 1 1.6555 0.3574 2.4040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044867291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:14 Heat of formation + Delta-G solvation = -13.820521 kcal Electronic energy + Delta-G solvation = -29520.267156 eV Core-core repulsion = 25339.610936 eV Total energy + Delta-G solvation = -4180.656220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.61201 -39.71098 -39.06072 -38.56606 -36.73348 -35.35418 -33.91073 -33.13048 -32.82007 -31.42452 -30.24729 -29.36098 -27.33378 -25.03890 -24.13220 -23.44854 -23.08682 -21.78569 -21.43527 -20.03109 -19.89079 -18.20396 -17.99390 -17.22202 -16.88506 -16.46409 -16.12178 -15.66502 -15.38442 -15.26092 -14.77393 -14.50734 -14.44973 -14.16873 -13.95264 -13.73839 -13.56081 -13.52412 -13.33907 -12.76223 -12.60097 -12.31201 -11.90164 -11.78814 -11.46812 -11.27220 -11.14986 -10.94717 -10.78734 -10.70574 -10.55129 -10.32444 -10.21081 -10.08433 -10.05354 -9.74625 -9.52468 -8.88367 -8.76854 -8.54030 -6.72063 -6.24735 -4.26596 -0.30247 1.29434 1.88245 2.07454 2.41039 2.51789 2.97933 3.12186 3.19396 3.21968 3.61722 3.79128 3.82645 4.13735 4.21632 4.45962 4.51534 4.97619 5.01853 5.05067 5.09366 5.23891 5.38280 5.52028 5.59124 5.66417 5.69892 5.89849 5.92112 5.99253 6.06916 6.18791 6.25185 6.41874 6.46777 6.50296 6.61122 6.69617 6.73013 6.76357 6.87577 7.12467 7.36586 7.57242 7.67899 7.77283 7.94291 8.11827 8.32795 8.82075 9.32906 10.87773 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.003239 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.299479 B = 8642.893330 C = 9993.740179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.579 5.579 4 C 0.212 3.788 5 C -0.538 4.538 6 H 0.081 0.919 7 C 0.076 3.924 8 N -0.888 5.888 9 Si 0.870 3.130 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.295 3.705 14 C -0.207 4.207 15 C 0.040 3.960 16 C -0.238 4.238 17 C 0.177 3.823 18 C -0.314 4.314 19 C 0.564 3.436 20 O -0.464 6.464 21 N -0.690 5.690 22 C 0.687 3.313 23 O -0.523 6.523 24 N -0.634 5.634 25 C 0.497 3.503 26 O -0.440 6.440 27 C -0.005 4.005 28 C -0.240 4.240 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.029 0.971 36 H 0.267 0.733 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.147 0.853 40 H 0.421 0.579 41 H 0.422 0.578 42 H 0.120 0.880 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.236 -6.551 16.708 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.007 4.007 3 N -0.277 5.277 4 C 0.091 3.909 5 C -0.576 4.576 6 H 0.099 0.901 7 C -0.128 4.128 8 N -0.525 5.525 9 Si 0.697 3.303 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.181 3.819 14 C -0.229 4.229 15 C 0.020 3.980 16 C -0.240 4.240 17 C 0.155 3.845 18 C -0.321 4.321 19 C 0.354 3.646 20 O -0.336 6.336 21 N -0.361 5.361 22 C 0.388 3.612 23 O -0.397 6.397 24 N -0.391 5.391 25 C 0.289 3.711 26 O -0.235 6.235 27 C -0.024 4.024 28 C -0.262 4.262 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.153 0.847 38 H 0.130 0.870 39 H 0.164 0.836 40 H 0.261 0.739 41 H 0.281 0.719 42 H 0.138 0.862 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.907 -6.256 16.179 19.500 hybrid contribution 0.136 0.491 -1.100 1.212 sum 9.043 -5.765 15.079 18.504 Atomic orbital electron populations 1.22222 0.95740 1.01012 1.04005 1.21462 0.95007 0.82504 1.01760 1.47116 1.63378 1.12527 1.04646 1.19893 0.98033 0.92778 0.80158 1.21360 0.97496 1.31205 1.07584 0.90097 1.24877 0.95892 0.94765 0.97217 1.69885 1.27083 1.32216 1.23345 0.86952 0.83993 0.78190 0.81204 1.20001 1.20779 1.18984 1.18306 0.86501 0.91065 0.86040 1.20512 1.08888 0.94370 0.99159 1.20646 0.90449 0.96189 0.90747 1.17560 1.17796 0.96297 0.92385 1.22441 0.78852 0.89269 0.93967 1.21062 1.12779 0.99661 0.98619 1.18087 0.80678 0.80695 0.85181 1.91081 1.55117 1.61213 1.26196 1.45495 1.47412 1.16254 1.26955 1.16872 0.79727 0.85985 0.78613 1.90956 1.56628 1.16969 1.75159 1.69174 1.23542 1.13540 1.32857 1.21934 0.79310 0.86588 0.83242 1.84873 1.58268 1.45002 1.35386 1.20633 0.93052 0.91301 0.97426 1.20278 1.13593 1.01263 0.91079 0.92788 0.90333 0.92754 0.91366 0.90766 0.94581 0.95340 0.92328 0.84694 0.87024 0.83605 0.73933 0.71948 0.86162 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.12 1.68 5.90 -4.04 -0.02 1.66 16 3 N -0.58 -10.41 2.56 -173.08 -0.44 -10.85 16 4 C 0.21 4.48 4.01 -5.19 -0.02 4.46 16 5 C -0.54 -13.90 9.48 -34.44 -0.33 -14.22 16 6 H 0.08 2.36 7.67 -52.49 -0.40 1.96 16 7 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -25.89 13.96 55.43 0.77 -25.11 16 9 Si 0.87 19.70 27.47 -169.99 -4.67 15.03 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -5.66 6.54 56.52 0.37 -5.29 16 13 C 0.29 5.04 6.56 -83.84 -0.55 4.49 16 14 C -0.21 -3.69 9.13 -39.79 -0.36 -4.05 16 15 C 0.04 0.61 6.50 -39.39 -0.26 0.35 16 16 C -0.24 -3.01 4.60 -106.87 -0.49 -3.51 16 17 C 0.18 1.71 9.23 -38.10 -0.35 1.36 16 18 C -0.31 -3.59 5.86 -102.32 -0.60 -4.19 16 19 C 0.56 8.23 7.32 -12.31 -0.09 8.14 16 20 O -0.46 -8.23 13.23 5.21 0.07 -8.16 16 21 N -0.69 -9.95 5.18 -17.13 -0.09 -10.03 16 22 C 0.69 10.81 8.49 -89.03 -0.76 10.05 16 23 O -0.52 -9.86 17.96 5.08 0.09 -9.76 16 24 N -0.63 -8.46 10.29 -15.22 -0.16 -8.62 16 25 C 0.50 5.04 8.13 -13.80 -0.11 4.92 16 26 O -0.44 -2.61 13.01 -16.59 -0.22 -2.82 16 27 C 0.00 -0.06 9.72 -39.39 -0.38 -0.44 16 28 C -0.24 -3.34 9.13 -39.79 -0.36 -3.70 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.47 7.26 -51.93 -0.38 1.09 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.80 6.16 -51.93 -0.32 0.48 16 33 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 34 H 0.04 0.77 5.21 -51.93 -0.27 0.50 16 35 H 0.03 0.58 7.32 -51.93 -0.38 0.20 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.14 2.65 6.09 -52.49 -0.32 2.33 16 38 H 0.11 1.65 7.14 -52.48 -0.37 1.28 16 39 H 0.15 0.86 7.77 -52.49 -0.41 0.45 16 40 H 0.42 5.72 8.84 -40.82 -0.36 5.36 16 41 H 0.42 0.89 8.99 45.56 0.41 1.29 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.12 1.49 6.10 -52.49 -0.32 1.17 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -34.37 363.30 -7.54 -41.91 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -3.97 Total: 7.89 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -4.40 Total: 5.06 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.08 Total: -54.62 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.06 Total: -20.75 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.67 Total: 15.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.37 -7.54 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044867291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.090 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds